Select Publications

Journal articles

Elhalis H; Cox J; Frank D; Zhao J, 2021, 'Microbiological and biochemical performances of six yeast species as potential starter cultures for wet fermentation of coffee beans', LWT, vol. 137, pp. 110430 - 110430,

Elhalis H; Cox J; Frank D; Zhao J, 2020, 'The crucial role of yeasts in the wet fermentation of coffee beans and quality', International Journal of Food Microbiology, vol. 333, pp. 108796 - 108796,

Arbita AA; Paul NA; Cox J; Zhao J, 2020, 'Extraction, partial purification and characterization of proteases from the red seaweed Gracilaria edulis with similar cleavage sites on κ-casein as calf rennet', Food Chemistry, vol. 330,

Elhalis H; Cox J; Zhao J, 2020, 'Ecological diversity, evolution and metabolism of microbial communities in the wet fermentation of Australian coffee beans', International Journal of Food Microbiology, vol. 321,

Elhalis H; Cox J; Frank D; Zhao J, 2020, 'The role of wet fermentation in enhancing coffee flavor, aroma and sensory quality', European Food Research and Technology,

Groves PJ; Sharpe SM; Muir WI; Pavic A; Cox JM, 2016, 'Live and inactivated vaccine regimens against caecal Salmonella Typhimurium colonisation in laying hens', Australian veterinary journal, vol. 94, pp. 387 - 393,

Pavic A; Cox JM; Chenu JW, 2015, 'Effect of extending processing plant operating time on the microbiological quality and safety of broiler carcasses', Food Control, vol. 56, pp. 103 - 109,

Groves PJ; Sharpe SM; Cox JM, 2015, 'Response of layer and broiler strain chickens to parenteral administration of a live Salmonella Typhimurium vaccine', Poultry Science, vol. 94, pp. 1512 - 1520,

Kaakoush NO; Sodhi N; Chenu JW; Cox JM; Riordan SM; Mitchell HM, 2014, 'The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens', Gut Pathogens, vol. 6,

Pham HC; Koshy P; Cox JM; Sorrell CC, 2014, 'Effect of heat treatment temperature on properties of nanocrystalline, photoactive, titania, thin films on polymer and fused quartz', Ceramic Engineering and Science Proceedings, vol. 35, pp. 61 - 76

Oh MH; Ham JS; Cox JM, 2012, 'Diversity and toxigenicity among members of the Bacillus cereus group', International Journal of Food Microbiology, vol. 152, pp. 1 - 8,

Chenu JW; Cox J; Pavic A, 2012, 'Classification of Salmonella enterica serotypes from Australian poultry using repetitive sequence-based PCR', Journal of Applied Microbiology, vol. 112, pp. 185 - 196,

Pham HC; Hanaor DAH; Cox JM; Sorrell CC, 2011, 'Deposition of nanocrystalline TiO 2 thin films on poly(ethylene Terephthalate) at ≤130°C', 2011 International Conference on Applied Superconductivity and Electromagnetic Devices, ASEMD 2011, pp. 330 - 332,

Pavic A; Groves PJ; Cox JM, 2011, 'Development and validation of a drag swab method using tampons and different diluents for the detection of members of Salmonella in broiler houses', Avian Pathology, vol. 40, pp. 651 - 656,

Karajanagi SS; Yoganathan RB; Mammucari R; Park H; Cox J; Zeitels SM; Langer R; Foster NR, 2011, 'Application of a dense gas technique for sterilizing soft biomaterials', Biotechnology and Bioengineering, vol. 108, pp. 1716 - 1725,

Oh MH; Cox JM, 2010, 'Quantitative analysis of the bacillus cereus emetic toxin, cereulide, using micellar electrokinetic chromatography-capillary electrophoresis', Journal of Food Safety, vol. 30, pp. 652 - 665,

Pavic A; Groves PJ; Bailey G; Cox JM, 2010, 'A validated miniaturized MPN method, based on ISO 6579:2002, for the enumeration of Salmonella from poultry matrices', Journal of Applied Microbiology, vol. 109, pp. 25 - 34,

Cox JM; Pavic A, 2010, 'Advances in enteropathogen control in poultry production', Journal of Applied Microbiology, vol. 108, pp. 745 - 755,

Pavic A; Groves PJ; Cox JM, 2010, 'Utilization of a novel autologous killed tri-vaccine (serogroups B [Typhimurium], C [Mbandaka] and E [Orion]) for Salmonella control in commercial poultry breeders', Avian Pathology, vol. 39, pp. 31 - 39,

Oh M; Cox J, 2010, 'Development and application of a centrifugation-plating method to study the biodiversity of Bacillus species in rice products', Food Control, vol. 21, pp. 7 - 12,

Chenu J; Cox J, 2009, 'Cronobacter (`enterobacter sakazakii`): Current status and future prospects', Letters in Applied Microbiology, vol. 49, pp. 153 - 159,

Richardson L; Cox N; Bailey J; Berrang M; Cox J; Buhr R; Fedorka-Cray P; Harrison M, 2009, 'Evaluation of TECRA broth, Bolton broth, and direct plating for recovery of Campylobacter spp. From broiler carcass rinsates from commercial processing plants', Journal of Food Protection, vol. 72, pp. 972 - 977,

Oh M; Cox J, 2009, 'Toxigenic bacilli associated with food poisoning', Food Science and Biotechnology, vol. 18, pp. 594 - 603

Fedorka-Cray P; Richardson L; Cox N; Cox J, 2008, 'DETECTION OF CAMPYLOBACTER FROM BROILER CARCASS RINSE SAMPLES UTILIZING THE TECRA VISUAL IMMUNOASSAY (VIA)', Journal of Rapid Methods and Automation in Microbiology, vol. 16, pp. 374 - 380,

Rao KVS; Zhuo B; Cox JM; Chiang K; Brungs M; Amal R, 2006, 'Photoinduced Bactericidal Properties of Nanocrystalline TiO2 Thin Films', JOURNAL OF BIOMEDICAL NANOTECHNOLOGY, vol. 2, pp. 71 - 73,

Cox JM; Richardson LJ; Fedorka-Cray P; Baileys JS; Cox NA, 2006, 'Detection of Campylobacter from broiler carcass rinse samples using the Tecra Visual Immunoassay (VIA)', POULTRY SCIENCE, vol. 85, pp. 198 - 198,

Bailey JS; Berrang ME; Cox JM, 2006, 'Detection of Salmonella from naturally contaminated chicken carcass rinse samples using the automated BAX PCR system', POULTRY SCIENCE, vol. 85, pp. 172 - 172,

Toh M; Moffitt MC; Raftery MJ; Barrow KD; Cox J; Marquis C; Neilan BA, 2004, 'Cereulide, the emetic toxin of Bacillus cereus, is putatively a product of nonribosomal peptide synthesis', Journal of Applied Microbiology, vol. 97, pp. 992 - 1000,

Rodgers S; Kailasapathy K; Cox J, 2004, 'Co-incubation of Clostridium botulinum with protective cultures', Food Research International, vol. 37, pp. 659 - 666,

Teoh AL; Heard GM; Cox J, 2004, 'Yeast ecology of Kombucha fermentation', International Journal of Food Microbiology, vol. 95, pp. 119 - 126,

Arcot J; Cox J; Ginting E, 2003, 'Determination of folate retention during tofu preparation using trienzyme treatment and microbiological assay', Indonesian Journal of Agricultrual Sciences, vol. 4, pp. 12 - 17

Cox J, 2003, 'Food Microbiology: structure and functon, teaching and learning', Microbiology Australia, vol. 24, pp. 45 - 46

Rodgers S; Kailasapathy K; Peiris P; Cox J, 2003, 'Inhibition of non-proteolytic Clostridium botulinum with lactic acid bacteria in extended shelf-life cook-chill soups', Food Biotechnology, vol. 17, pp. 39 - 52,

Siriamornpun S; Wootton M; Cox JM; Bekes F; Wrigley CW, 2001, 'Capillary electrophoresis of wheat gliadin proteins and its potential for wheat varietal identification using pattern matching software', Australian Journal of Agricultural Research, vol. 52, pp. 839 - 843,

Fleet GH; Cox J; Kolak D; Leung T; Addis EP, 2001, 'The growth, properties and interactions of yeasts and bacteria associated with the maturation of Camembert and blue-veined cheeses', International Journal of Food Microbiology, vol. 69, pp. 25 - 36,

Cox J, 2000, 'Choosing a quality control system', Food Australia, pp. 586

Cox J, 2000, 'International Journal of Food Microbiology', International Journal of Food Microbiology

Cox J, 2000, 'Letters in Applied Microbiology', Letters in Applied Microbiology

Cox J, 2000, 'Microbiological analysis of food and water: guidelines for quality assurance', Food Australia, pp. 100

Jayasekara NY; Heard GM; Cox J; Fleet GH, 1999, 'Association of microorganisms with the inner surface of bottles of non-carbonated mineral waters', Food Microbiology, vol. 16, pp. 115 - 128,

Cox J; Fleet G, 1998, 'New directions in the microbiological analysis of foods', FOOD AUSTRALIA, vol. 50, pp. 316 - 316,

Sullivan AM; Ward LA; Rowe B; Woolcock JB; Cox J, 1998, 'Phage types of Australian isolates of Salmonella enterica subsp. enterica serovar Virchow', Letters in Applied Microbiology, vol. 27, pp. 216 - 218,

Jayasekara NY; Heard GM; Cox J; Fleet GH, 1998, 'Populations of pseudomonads and related bacteria associated with bottled non-carbonated mineral water', Food Microbiology, vol. 15, pp. 167 - 176,

Murtiningsih ; Cox J, 1997, 'Evaluation of the serobact and microbact systems for the detection and identification of Listeria SPP', Food Control, vol. 8, pp. 205 - 210

Cox J, 1997, 'From Petri dishes to PCR', Analytical Testing Technology, pp. 27 - 30

Cox J, 1997, 'The future fate of the food microbiologist', Microbiology Australia, vol. 18, pp. 24 - 26

Cox J, 1996, 'Environmental aspects of Listeria monocytogenes', Food Australia, vol. 48, pp. 165 - 168

Humphrey TE; Williams A; Mcalpine K; Lever MS; Guard-Petter J; Cox J, 1996, 'Isolates of Salmonella enterica Enteritidas PT4 with enhanced heat and acid tolerance are more virulent in mice and more invasive in chickens', Epidemiology and Infection, vol. 117, pp. 79 - 88,

Cox J; Story L; Bowles R; Woolcock JB, 1996, 'Multilocus enzyme electrophoretic (MEE) analysis of Austrlian isolates of Salmonella enteritidis', International Journal of Food Microbiology, vol. 31, pp. 273 - 282,

Cox J; Brook MD; Woolcock JB, 1996, 'Sensitivity of Australian isolates of Salmonella enteritidis to nitrofurantoin and furazolidone', Veterinary Microbiology, vol. 49, pp. 305 - 308,

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