Select Publications

Journal articles

Arbita AA; Paul NA; Cox J; Zhao J, 2024, 'A novel cheese made of Gracilaria edulis proteases and its characterisation', International Dairy Journal, 153, pp. 105906 - 105906, http://dx.doi.org/10.1016/j.idairyj.2024.105906

Elhalis H; Cox J; Zhao J, 2023, 'Yeasts are essential for mucilage degradation of coffee beans during wet fermentation', Yeast, http://dx.doi.org/10.1002/yea.3888

Elhalis H; Cox J; Zhao J, 2023, 'Coffee fermentation: Expedition from traditional to controlled process and perspectives for industrialization', Applied Food Research, 3, http://dx.doi.org/10.1016/j.afres.2022.100253

Arbita AA; Paul NA; Cox J; Zhao J, 2023, 'Screening and isolation of milk-clotting enzymes from seaweed', Journal of Applied Phycology, http://dx.doi.org/10.1007/s10811-023-02975-4

Arbita AA; Paul NA; Cox J; Zhao J, 2022, 'Amino acid sequence of two new milk-clotting proteases from the macroalga Gracilaria edulis', International Journal of Biological Macromolecules, 211, pp. 499 - 505, http://dx.doi.org/10.1016/j.ijbiomac.2022.05.038

Elhalis H; Cox J; Frank D; Zhao J, 2021, 'Microbiological and Chemical Characteristics of Wet Coffee Fermentation Inoculated With Hansinaspora uvarum and Pichia kudriavzevii and Their Impact on Coffee Sensory Quality', Frontiers in Microbiology, 12, http://dx.doi.org/10.3389/fmicb.2021.713969

Elhalis H; Cox J; Frank D; Zhao J, 2021, 'Microbiological and biochemical performances of six yeast species as potential starter cultures for wet fermentation of coffee beans', LWT, 137, http://dx.doi.org/10.1016/j.lwt.2020.110430

Elhalis H; Cox J; Frank D; Zhao J, 2021, 'The role of wet fermentation in enhancing coffee flavor, aroma and sensory quality', European Food Research and Technology, 247, pp. 485 - 498, http://dx.doi.org/10.1007/s00217-020-03641-6

Elhalis H; Cox J; Frank D; Zhao J, 2020, 'The crucial role of yeasts in the wet fermentation of coffee beans and quality', International Journal of Food Microbiology, 333, http://dx.doi.org/10.1016/j.ijfoodmicro.2020.108796

Arbita AA; Paul NA; Cox J; Zhao J, 2020, 'Extraction, partial purification and characterization of proteases from the red seaweed Gracilaria edulis with similar cleavage sites on κ-casein as calf rennet', Food Chemistry, 330, http://dx.doi.org/10.1016/j.foodchem.2020.127324

Elhalis H; Cox J; Zhao J, 2020, 'Ecological diversity, evolution and metabolism of microbial communities in the wet fermentation of Australian coffee beans', International Journal of Food Microbiology, 321, http://dx.doi.org/10.1016/j.ijfoodmicro.2020.108544

Groves PJ; Sharpe SM; Muir WI; Pavic A; Cox JM, 2016, 'Live and inactivated vaccine regimens against caecal Salmonella Typhimurium colonisation in laying hens', Australian veterinary journal, 94, pp. 387 - 393, http://dx.doi.org/10.1111/avj.12490

Pavic A; Cox JM; Chenu JW, 2015, 'Effect of extending processing plant operating time on the microbiological quality and safety of broiler carcasses', Food Control, 56, pp. 103 - 109, http://dx.doi.org/10.1016/j.foodcont.2014.11.048

Groves PJ; Sharpe SM; Cox JM, 2015, 'Response of layer and broiler strain chickens to parenteral administration of a live Salmonella Typhimurium vaccine', Poultry Science, 94, pp. 1512 - 1520, http://dx.doi.org/10.3382/ps/pev127

Kaakoush NO; Sodhi N; Chenu JW; Cox JM; Riordan SM; Mitchell HM, 2014, 'The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens', Gut Pathogens, 6, http://dx.doi.org/10.1186/1757-4749-6-18

Pham HC; Koshy P; Cox JM; Sorrell CC, 2014, 'Effect of heat treatment temperature on properties of nanocrystalline, photoactive, titania, thin films on polymer and fused quartz', Ceramic Engineering and Science Proceedings, 35, pp. 61 - 76

Oh MH; Ham JS; Cox JM, 2012, 'Diversity and toxigenicity among members of the Bacillus cereus group', International Journal of Food Microbiology, 152, pp. 1 - 8, http://dx.doi.org/10.1016/j.ijfoodmicro.2011.09.018

Chenu JW; Cox J; Pavic A, 2012, 'Classification of Salmonella enterica serotypes from Australian poultry using repetitive sequence-based PCR', Journal of Applied Microbiology, 112, pp. 185 - 196, http://dx.doi.org/10.1111/j.1365-2672.2011.05172.x

Pham HC; Hanaor DAH; Cox JM; Sorrell CC, 2011, 'Deposition of nanocrystalline TiO 2 thin films on poly(ethylene Terephthalate) at ≤130°C', 2011 International Conference on Applied Superconductivity and Electromagnetic Devices, ASEMD 2011, pp. 330 - 332, http://dx.doi.org/10.1109/ASEMD.2011.6145136

Pavic A; Groves PJ; Cox JM, 2011, 'Development and validation of a drag swab method using tampons and different diluents for the detection of members of Salmonella in broiler houses', Avian Pathology, 40, pp. 651 - 656, http://dx.doi.org/10.1080/03079457.2011.625566

Karajanagi SS; Yoganathan RB; Mammucari R; Park H; Cox J; Zeitels SM; Langer R; Foster NR, 2011, 'Application of a dense gas technique for sterilizing soft biomaterials', Biotechnology and Bioengineering, 108, pp. 1716 - 1725, http://dx.doi.org/10.1002/bit.23105

Oh MH; Cox JM, 2010, 'Quantitative analysis of the bacillus cereus emetic toxin, cereulide, using micellar electrokinetic chromatography-capillary electrophoresis', Journal of Food Safety, 30, pp. 652 - 665, http://dx.doi.org/10.1111/j.1745-4565.2010.00231.x

Pavic A; Groves PJ; Cox JM, 2010, 'Utilization of a novel autologous killed tri-vaccine (serogroups B [Typhimurium], C [Mbandaka] and E [Orion]) for Salmonella control in commercial poultry breeders', Avian Pathology, 39, pp. 31 - 39, http://dx.doi.org/10.1080/03079450903454277

Pavic A; Groves PJ; Bailey G; Cox JM, 2010, 'A validated miniaturized MPN method, based on ISO 6579:2002, for the enumeration of Salmonella from poultry matrices', Journal of Applied Microbiology, 109, pp. 25 - 34, http://dx.doi.org/10.1111/j.1365-2672.2009.04649.x

Cox JM; Pavic A, 2010, 'Advances in enteropathogen control in poultry production', Journal of Applied Microbiology, 108, pp. 745 - 755, http://dx.doi.org/10.1111/j.1365-2672.2009.04456.x

Oh M; Cox J, 2010, 'Development and application of a centrifugation-plating method to study the biodiversity of Bacillus species in rice products', Food Control, 21, pp. 7 - 12

Chenu J; Cox J, 2009, 'Cronobacter (`enterobacter sakazakii`): Current status and future prospects', Letters in Applied Microbiology, 49, pp. 153 - 159, http://dx.doi.org/10.1111/j.1472-765X.2009.02651.x

Richardson L; Cox N; Bailey J; Berrang M; Cox J; Buhr R; Fedorka-Cray P; Harrison M, 2009, 'Evaluation of TECRA broth, Bolton broth, and direct plating for recovery of Campylobacter spp. From broiler carcass rinsates from commercial processing plants', Journal of Food Protection, 72, pp. 972 - 977

Oh M; Cox J, 2009, 'Toxigenic bacilli associated with food poisoning', Food Science and Biotechnology, 18, pp. 594 - 603

Fedorka-Cray P; Richardson L; Cox N; Cox J, 2008, 'DETECTION OF CAMPYLOBACTER FROM BROILER CARCASS RINSE SAMPLES UTILIZING THE TECRA VISUAL IMMUNOASSAY (VIA)', Journal of Rapid Methods and Automation in Microbiology, 16, pp. 374 - 380

Rao KVS; Zhuo B; Cox JM; Chiang K; Brungs M; Amal R, 2006, 'Photoinduced Bactericidal Properties of Nanocrystalline TiO2 Thin Films', JOURNAL OF BIOMEDICAL NANOTECHNOLOGY, 2, pp. 71 - 73, http://dx.doi.org/10.1166/jbn.2006.006

Cox JM; Richardson LJ; Fedorka-Cray P; Baileys JS; Cox NA, 2006, 'Detection of Campylobacter from broiler carcass rinse samples using the Tecra Visual Immunoassay (VIA)', POULTRY SCIENCE, 85, pp. 198 - 198, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000203407600617&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Bailey JS; Berrang ME; Cox JM, 2006, 'Detection of Salmonella from naturally contaminated chicken carcass rinse samples using the automated BAX PCR system', POULTRY SCIENCE, 85, pp. 172 - 172, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000203407600532&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Toh M; Moffitt MC; Raftery MJ; Barrow KD; Cox J; Marquis C; Neilan BA, 2004, 'Cereulide, the emetic toxin of Bacillus cereus, is putatively a product of nonribosomal peptide synthesis', Journal of Applied Microbiology, pp. 992 - 1000

Rodgers S; Kailasapathy K; Cox J, 2004, 'Co-incubation of Clostridium botulinum with protective cultures', Food Research International, 37, pp. 659 - 666

Teoh AL; Heard GM; Cox J, 2004, 'Yeast ecology of Kombucha fermentation', International Journal of Food Microbiology, pp. 119 - 126

Arcot J; Cox J; Ginting E, 2003, 'Determination of folate retention during tofu preparation using trienzyme treatment and microbiological assay', Indonesian Journal of Agricultrual Sciences, 4, pp. 12 - 17

Cox J, 2003, 'Food Microbiology: structure and functon, teaching and learning', Microbiology Australia, 24, pp. 45 - 46

Rodgers S; Kailasapathy K; Peiris P; Cox J, 2003, 'Inhibition of non-proteolytic Clostridium botulinum with lactic acid bacteria in extended shelf-life cook-chill soups', Food Biotechnology, 17, pp. 39 - 52

Siriamornpun S; Wootton M; Cox JM; Bekes F; Wrigley CW, 2001, 'Capillary electrophoresis of wheat gliadin proteins and its potential for wheat varietal identification using pattern matching software', Australian Journal of Agricultural Research, 52, pp. 839 - 843, http://dx.doi.org/10.1071/AR00179

Fleet GH; Cox J; Kolak D; Leung T; Addis EP, 2001, 'The growth, properties and interactions of yeasts and bacteria associated with the maturation of Camembert and blue-veined cheeses', International Journal of Food Microbiology, pp. 25 - 36

Cox J, 2000, 'Choosing a quality control system', Food Australia, pp. 586

Cox J, 2000, 'International Journal of Food Microbiology', International Journal of Food Microbiology

Cox J, 2000, 'Letters in Applied Microbiology', Letters in Applied Microbiology

Cox J, 2000, 'Microbiological analysis of food and water: guidelines for quality assurance', Food Australia, pp. 100

Jayasekara NY; Heard GM; Cox J; Fleet GH, 1999, 'Association of microorganisms with the inner surface of bottles of non-carbonated mineral waters', Food Microbiology, 16, pp. 115 - 128

Cox J; Fleet G, 1998, 'New directions in the microbiological analysis of foods', FOOD AUSTRALIA, 50, pp. 316 - 316, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000075943100010&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Sullivan AM; Ward LA; Rowe B; Woolcock JB; Cox J, 1998, 'Phage types of Australian isolates of Salmonella enterica subsp. enterica serovar Virchow', Letters in Applied Microbiology, pp. 216 - 218

Jayasekara NY; Heard GM; Cox J; Fleet GH, 1998, 'Populations of pseudomonads and related bacteria associated with bottled non-carbonated mineral water', Food Microbiology, 15, pp. 167 - 176

Murtiningsih ; Cox J, 1997, 'Evaluation of the serobact and microbact systems for the detection and identification of Listeria SPP', Food Control, pp. 205 - 210


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