Select Publications

Book Chapters

Ping P; Vondriska TM; Creighton CJ; Gandhi TKB; Yang Z; Menon R; Kwon MS; Cho SY; Drwal G; Kellmann M; Peri S; Suresh S; Gronborg M; Molina H; Chaerkady R; Rekha B; Shet AS; Gerszten RE; Wu H; Raftery M; Wasinger V; Schulz-Knappe P; Hanash SM; Paik YK; Hancock WS; States DJ; Omenn GS; Pandey A, 2006, 'A functional annotation of subproteomes in human plasma', in Exploring the Human Plasma Proteome, pp. 329 - 351, http://dx.doi.org/10.1002/9783527609482.ch16

Cavicchioli R; Goodchild A; Raftery M, 2005, 'Proteomics of Archaea', in Microbial Proteomics: Functional Biology of Whole Organisms, pp. 57 - 72, http://dx.doi.org/10.1002/0471973165.ch5

Raftery MJ, 2000, 'Methods in Molecular Biology', in Mass spectrometry of proteins and peptides, edn. Original, Humana Press, Totowa, USA, pp. 27 - 39

Journal articles

Li Y; Alhendi AMN; Yeh MC; Elahy M; Santiago FS; Deshpande NP; Wu B; Chan E; Inam S; Prado-Lourenco L; Marchand J; Joyce RD; Wilkinson-White LE; Raftery MJ; Zhu M; Adamson SJ; Barnat F; Viaud-Quentric K; Sockler J; Mackay JP; Chang A; Mitchell P; Marcuccio SM; Khachigian LM, 2020, 'Thermostable small-molecule inhibitor of angiogenesis and vascular permeability that suppresses a pERK-FosB/ΔFosB-VCAM-1 axis', Science Advances, vol. 6, pp. eaaz7815, http://dx.doi.org/10.1126/sciadv.aaz7815

Luu LDW; Octavia S; Aitken C; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2020, 'Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens', Vaccine, vol. 38, pp. 539 - 548, http://dx.doi.org/10.1016/j.vaccine.2019.10.062

Li Y; Alhendi AMN; Yeh M-C; Elahy M; Santiago FS; Deshpande NP; Wu B; Chan E; Inam S; Prado-Lourenco L; Marchand J; Joyce RD; Wilkinson-White LE; Raftery MJ; Zhu M; Adamson SJ; Barnat F; Viaud-Quentric K; Sockler J; Mackay JP; Chang A; Mitchell P; Marcuccio SM; Khachigian LM, 2020, 'Thermostable small-molecule inhibitor of angiogenesis and vascular permeability that suppresses a pERK-FosB/ΔFosB-VCAM-1 axis.', Sci Adv, vol. 6, http://dx.doi.org/10.1126/sciadv.aaz7815

Santiago FS; Sanchez-Guerrero E; Zhang G; Zhong L; Raftery MJ; Khachigian LM, 2019, 'Extracellular signal-regulated kinase-1 phosphorylates early growth response-1 at serine 26', Biochemical and Biophysical Research Communications, vol. 510, pp. 345 - 351, http://dx.doi.org/10.1016/j.bbrc.2019.01.019

Williams TJ; Allen MA; Liao Y; Raftery MJ; Cavicchioli R, 2019, 'Sucrose metabolism in haloarchaea: Reassessment using genomics, proteomics, and metagenomics', Applied and Environmental Microbiology, vol. 85, http://dx.doi.org/10.1128/AEM.02935-18

Hamm JN; Erdmann S; Eloe-Fadrosh EA; Angeloni A; Zhong L; Brownlee C; Williams TJ; Barton K; Carswell S; Smith MA; Brazendale S; Hancock AM; Allen MA; Raftery MJ; Cavicchioli R, 2019, 'Unexpected host dependency of Antarctic Nanohaloarchaeota', Proceedings of the National Academy of Sciences of the United States of America, vol. 116, pp. 14661 - 14670, http://dx.doi.org/10.1073/pnas.1905179116

Wai Luu LD; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Comparison of the whole cell proteome and secretome of epidemic bordetella pertussis strains from the 2008–2012 Australian epidemic under sulfate-modulating conditions', Frontiers in Microbiology, vol. 9, http://dx.doi.org/10.3389/fmicb.2018.02851

Unnikrishnan A; Vo ANQ; Pickford R; Raftery MJ; Nunez AC; Verma A; Hesson LB; Pimanda JE, 2018, 'AZA-MS: A novel multiparameter mass spectrometry method to determine the intracellular dynamics of azacitidine therapy in vivo', Leukemia, vol. 32, pp. 900 - 910, http://dx.doi.org/10.1038/leu.2017.340

Luu LDW; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Proteomic Adaptation of Australian Epidemic Bordetella pertussis', Proteomics, vol. 18, http://dx.doi.org/10.1002/pmic.201700237

Erdmann S; Tschitschko B; Zhong L; Raftery MJ; Cavicchioli R, 2017, 'A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells', Nature Microbiology, vol. 2, pp. 1446 - 1455, http://dx.doi.org/10.1038/s41564-017-0009-2

Strbenac D; Zhong L; Raftery MJ; Wang P; Wilson SR; Armstrong NJ; Yang JYH, 2017, 'Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods', Journal of Proteome Research, vol. 16, pp. 2359 - 2369, http://dx.doi.org/10.1021/acs.jproteome.6b00882

Williams TJ; Liao Y; Ye J; Kuchel RP; Poljak A; Raftery MJ; Cavicchioli R, 2017, 'Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi', Environmental Microbiology, vol. 19, pp. 2210 - 2227, http://dx.doi.org/10.1111/1462-2920.13705

Luu LDW; Octavia S; Zhong L; Raftery M; Sintchenko V; Lan R, 2017, 'Characterisation of the Bordetella pertussis secretome under different media', Journal of Proteomics, vol. 158, pp. 43 - 51, http://dx.doi.org/10.1016/j.jprot.2017.02.010

Unnikrishnan A; Guan YF; Huang Y; Beck D; Thoms JAI; Peirs S; Knezevic K; Ma S; De Walle IV; De Jong IDE; Ali Z; Zhong L; Raftery MJ; Taghon T; Larsson J; MacKenzie KL; Van Vlierberghe P; Wong JWH; Pimanda JE, 2016, 'A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network', Nucleic Acids Research, vol. 44, pp. 10644 - 10661, http://dx.doi.org/10.1093/nar/gkw804

Liao Y; Williams TJ; Ye J; Charlesworth J; Burns BP; Poljak A; Raftery MJ; Cavicchioli R, 2016, 'Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep37454

Jayasena T; Poljak A; Braidy N; Zhong L; Rowlands B; Muenchhoff J; Grant R; Smythe G; Teo C; Raftery M; Sachdev PS, 2016, 'Application of targeted mass spectrometry for the quantification of sirtuins in the central nervous system', Scientific Reports, vol. 6, pp. 35391 - 35391, http://dx.doi.org/10.1038/srep35391

Park M; Raftery MJ; Thomas PS; Geczy CL; Bryant K; Tedla N, 2016, 'Leukocyte immunoglobulin-like receptor B4 regulates key signalling molecules involved in FcγRI-mediated clathrin-dependent endocytosis and phagocytosis', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep35085

Muenchhoff J; Poljak A; Thalamuthu A; Gupta VB; Chatterjee P; Raftery M; Masters CL; Morris JC; Bateman RJ; Fagan AM; Martins RN; Sachdev PS, 2016, 'Changes in the plasma proteome at asymptomatic and symptomatic stages of autosomal dominant Alzheimer's disease', Scientific Reports, vol. 6, pp. 29078 - 29078, http://dx.doi.org/10.1038/srep29078

Dolai S; Sia KCS; Robbins AK; Zhong L; Heatley SL; Vincent TL; Hochgräfe F; Sutton R; Kurmasheva RT; Revesz T; White DL; Houghton PJ; Smith MA; Teachey DT; Daly RJ; Raftery MJ; Lock RB, 2016, 'Quantitative phosphotyrosine profiling of patient-derived xenografts identifies therapeutic targets in pediatric leukemia', Cancer Research, vol. 76, pp. 2766 - 2777, http://dx.doi.org/10.1158/0008-5472.CAN-15-2786

Richards SL; Cawley AT; Cavicchioli R; Suann CJ; Pickford R; Raftery MJ, 2016, 'Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC-MS/MS', Talanta, vol. 150, pp. 671 - 680, http://dx.doi.org/10.1016/j.talanta.2016.01.006

Tschitschko B; Williams TJ; Allen MA; Zhong L; Raftery MJ; Cavicchioli R, 2016, 'Ecophysiological distinctions of haloarchaea from a hypersaline Antarctic lake determined using metaproteomics.', Appl Environ Microbiol, vol. 82, pp. 3165 - 3173, http://dx.doi.org/10.1128/AEM.00473-16

Lyons B; Friedrich M; Raftery M; Truscott R, 2016, 'Amyloid Plaque in the Human Brain Can Decompose from Aβ(1-40/1-42) by Spontaneous Nonenzymatic Processes', Analytical Chemistry, vol. 88, pp. 2675 - 2684, http://dx.doi.org/10.1021/acs.analchem.5b03891

Alexova R; Dang TC; Fujii M; Raftery MJ; Waite TD; Ferrari BC; Neilan BA, 2016, 'Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa', Environmental Microbiology, vol. 18, pp. 401 - 413, http://dx.doi.org/10.1111/1462-2920.12958

Friedrich MG; Hancock SE; Raftery MJ; Truscott RJW, 2016, 'Isoaspartic acid is present at specific sites in myelin basic protein from multiple sclerosis patients: Could this represent a trigger for disease onset?', Acta Neuropathologica Communications, vol. 4, pp. 83, http://dx.doi.org/10.1186/s40478-016-0348-x

Percy AJ; Tamura-Wells J; Albar JP; Aloria K; Amirkhani A; Araujo GDT; Arizmendi JM; Blanco FJ; Canals F; Cho JY; Colomé-Calls N; Corrales FJ; Domont G; Espadas G; Fernandez-Puente P; Gil C; Haynes PA; Hernáez ML; Kim JY; Kopylov A; Marcilla M; McKay MJ; Mirzaei M; Molloy MP; Ohlund LB; Paik YK; Paradela A; Raftery M; Sabidó E; Sleno L; Wilffert D; Wolters JC; Yoo JS; Zgoda V; Parker CE; Borchers CH, 2015, 'Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment', EuPA Open Proteomics, vol. 8, pp. 6 - 15, http://dx.doi.org/10.1016/j.euprot.2015.06.001

Tschitschko B; Williams TJ; Allen MA; Páez-Espino D; Kyrpides N; Zhong L; Raftery MJ; Cavicchioli R, 2015, 'Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation', The ISME Journal, vol. 9, pp. 2094 - 2107, http://dx.doi.org/10.1038/ismej.2015.110

Jayasena T; Poljak A; Braidy N; Smythe G; Raftery M; Hill M; Brodaty H; Trollor J; Kochan N; Sachdev P, 2015, 'Upregulation of glycolytic enzymes, mitochondrial dysfunction and increased cytotoxicity in glial cells treated with Alzheimer's disease plasma', PLoS ONE, vol. 10, pp. e0116092, http://dx.doi.org/10.1371/journal.pone.0116092

Alexova R; Dang TC; Fujii M; Raftery MJ; Waite TD; Ferrari BC; Neilan BA, 2015, 'Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa', Environmental Microbiology, http://dx.doi.org/10.1111/1462-2920.12958

Kaakoush NO; Deshpande NP; Man SM; Burgos-Portugal JA; Khattak FA; Raftery MJ; Wilkins MR; Mitchell HM, 2015, 'Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus', Infection and Immunity, vol. 83, pp. 832 - 845, http://dx.doi.org/10.1128/IAI.03012-14

Gardiner M; Fernandes ND; Nowakowski D; Raftery M; Kjelleberg S; Zhong L; Thomas T; Egan S, 2015, 'VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11', Frontiers in Microbiology, vol. 6, http://dx.doi.org/10.3389/fmicb.2015.01130

Muenchhoff J; Poljak A; Song F; Raftery M; Brodaty H; Duncan M; McEvoy M; Attia J; Schofield PW; Sachdev PS, 2015, 'Plasma protein profiling of mild cognitive impairment and Alzheimer's disease across two independent cohorts', Journal of Alzheimer's Disease, vol. 43, pp. 1355 - 1373, http://dx.doi.org/10.3233/JAD-141266

Hou X; McMillan M; Coumans JVF; Poljak A; Raftery MJ; Pereg L, 2014, 'Cellular responses during morphological transformation in Azospirillum brasilense and its flcA knockout mutant', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0114435

Song F; Poljak A; Kochan N; Raftery M; Brodaty H; Smythe GA; Sachdev PS, 2014, 'Plasma protein profiling of Mild Cognitive Impairment and Alzheimer’s disease using iTRAQ quantitative proteomics', Proteome Science, vol. 12, http://dx.doi.org/10.1186/1477-5956-12-5

Masoudi S; Zhong L; Raftery MJ; Stapleton FJ; Willcox MD, 2014, 'Method development for quantification of five tear proteins using selected reaction monitoring (SRM) mass spectrometry', Investigative Ophthalmology and Visual Science, vol. 55, pp. 767 - 775, http://dx.doi.org/10.1167/iovs.13-12777

Raftery MJ, 2014, 'Determination of oxidative protein modifications using mass spectrometry', Redox Report, vol. 19, pp. 140 - 147, http://dx.doi.org/10.1179/1351000214y.0000000089

Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, vol. 2014, http://dx.doi.org/10.1155/2014/476047

Liao BM; Raddatz K; Zhong L; Parker BL; Raftery MJ; Schmitz-Peiffer C, 2014, 'Proteomic analysis of livers from fat-fed mice deficient in either PKCδ or PKCε identifies Htatip2 as a regulator of lipid metabolism', Proteomics, vol. 14, pp. 2578 - 2587, http://dx.doi.org/10.1002/pmic.201400202

Caplan GA; Poljak A; Hill MA; Hall R; MacLullich A; Raftery M; Tai J; Yan S, 2014, 'Quantitative Proteomics of Delirium Cerebrospinal Fluid', Translational Psychiatry, vol. 4, http://dx.doi.org/10.1038/tp.2014.114

Lee THY; Mitchell A; Lau SL; An H; Rajeaskariah P; Wasinger V; Raftery M; Bryant K; Tedla N, 2013, 'Glycosylation in a mammalian expression system is critical for the production of functionally active leukocyte immunoglobulin-like receptor A3 protein', Journal of Biological Chemistry, vol. 288, pp. 32873 - 32885, http://dx.doi.org/10.1074/jbc.M113.478578

Lee BY; Hochgraefe F; Lin H-M; Castillo L; Wu J; Raftery M; Shreeve SM; Horvath L; Daly R, 2013, 'Focal adhesion kinase: a mediator of docetaxel-resistance in castrate resistant prostate cancer', BJU INTERNATIONAL, vol. 112, pp. 38 - 39, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000321969100100&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Li A; Estigoy C; Raftery M; Cameron D; Odeberg J; Pontén F; Lal S; dos Remedios CG, 2013, 'Heart research advances using database search engines, human protein atlas and the sydney heart bank', Heart Lung and Circulation, vol. 22, pp. 819 - 826, http://dx.doi.org/10.1016/j.hlc.2013.06.006

Lee BY; Hochgräfe F; Lin HM; Castillo L; Wu J; Raftery MJ; Martin Shreeve S; Horvath LG; Daly RJ, 2013, 'Phosphoproteomic profiling identifies focal adhesion kinase as a mediator of docetaxel resistance in castrate-resistant prostate cancer', Molecular Cancer Therapeutics, vol. 13, pp. 190 - 201, http://dx.doi.org/10.1158/1535-7163.MCT-13-0225-T

Hooi MSY; Raftery MJ; Truscott RJW, 2013, 'Accelerated aging of Asp 58 in áA crystallin and human cataract formation', Experimental Eye Research, vol. 106, pp. 34 - 39, http://dx.doi.org/10.1016/j.exer.2012.10.013

Hooi MSY; Raftery MJ; Truscott RJW, 2013, 'Age-dependent racemization of serine residues in a human chaperone protein', Protein Science, vol. 22, pp. 93 - 100, http://dx.doi.org/10.1002/pro.2191

Raftery MJ; Yan WX; Goyette JD; Thomas PS; Geczy C; Gomes L, 2013, 'S100A8 and S100A9-oxidant scavengers in inflammation', Free Radical Biology and Medicine, vol. 58, pp. 170 - 186, http://dx.doi.org/10.1016/j.freeradbiomed.2012.12.012

Sirianni A; Kaakoush NO; Raftery MJ; Mitchell HM, 2013, 'The pathogenic potential of Helicobacter pullorum: Possible role for the Type VI secretion system', Helicobacter, vol. 18, pp. 102 - 111, http://dx.doi.org/10.1111/hel.12009

Hooi MYS; Raftery MJ; Truscott RJW, 2012, 'Racemization of two proteins over our lifespan: Deamidation of asparagine 76 in γS crystallin is greater in cataract than in normal lenses across the age range', Investigative Ophthalmology and Visual Science, vol. 53, pp. 3554 - 3561, http://dx.doi.org/10.1167/iovs.11-9085


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