By Associate Professor Mark Raftery

Conference Papers

Wang P; Yang JYH; Raftery M; Zhong L; Wilson S, 2013, 'Latin Square dataset for evaluating the accuracy of mass spectrometry-based protein identification and quantification', in He X (ed.), 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2013), Shanghai, China, pp. 65 - 67, presented at 2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, 18 December 2013 - 21 December 2013

Lee BY; Hochgraefe F; Lin HM; Castillo L; Raftery M; Horvath LG; Daly RJ, 2012, 'Overcoming Docetaxel Resistance in Prostate Cancer by Targeting FAK Phosphorylation, and Its Mode of Action', in EUROPEAN JOURNAL OF CANCER, ELSEVIER SCI LTD, IRELAND, European Org Res & Treatment Canc (EORTC), Dublin, pp. 48 - 49, presented at 24th EORTC-NCI-AACR Symposium on Molecular Targets and Cancer Therapeutics, IRELAND, European Org Res & Treatment Canc (EORTC), Dublin, 06 November 2012 - 09 November 2012, http://dx.doi.org/10.1016/S0959-8049(12)71956-1

Sirianni A; Kaakoush NO; Raftery M; Mitchell HM, 2012, 'HELICOBACTER PULLORUM - A POTENTIAL GASTROINTESTINAL PATHOGEN?', in HELICOBACTER, WILEY-BLACKWELL, SLOVENIA, Ljubljana, pp. 78 - 78, presented at 25th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SLOVENIA, Ljubljana, 13 September 2012 - 15 September 2012, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000308581600046&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Velonas VM; Raftery M; Zhong L; Poljak A; Assinder S; Woo H; Remedios CD, 2012, 'Peptide-based mass spectrometry identification of exosome proteins from prostate cancer cell lines', in BJU INTERNATIONAL, WILEY-BLACKWELL, AUSTRALIA, Darwin, pp. 20 - 21, presented at 65th Annual Scientific Meeting on Urological-Society-of-Australia-and-New Zealand, AUSTRALIA, Darwin, 21 April 2012 - 24 April 2012, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000303003900030&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Prior MJ; Larance M; Soul J; Burchfield J; Kanazawa H; Raftery M; James DE, 2010, 'Quantitative proteomic analysis of the adipocyte plasma membrane proteome identifies the Sodium/Hydrogen exchanger NHE6 as a novel insulin-responsive protein', in DIABETOLOGIA, SPRINGER, SWEDEN, Stockholm, pp. S114 - S114, presented at 46th Annual Meeting of the European-Association-for-the- Study-of-Diabetes (EASD), SWEDEN, Stockholm, 20 September 2010 - 24 September 2010, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000280689700260&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Poljak A; Hill MA; Raftery MJ; Caplan GA, 2010, 'Quantitative Proteomics of Delirium CSF', in Human Proteome World Congress Sydney 2010, ICMS Australasia Pty Ltd, Sydney, pp. 59 - 59, presented at HUPO-9th Annual World Congress, Sydney, Australia, 19 September 2010 - 23 September 2010, http://www.hupo.org/congress/congress_2010/downloads/HUPO%20Prog%20bookWEB.pdf

Geczy CL; Gomes L; Raftery M; Zhao J; Endoh I; Endoh Y; Thomas P, 2009, 'S100A8-An oxidant scavenger and immune modulator in allergic inflammation', in CYTOKINE, ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, PORTUGAL, Lisbon, pp. 40 - 40, presented at Tri-Society Annual Conference of the International-Cytokine-Society/International-Society-of-Interferon-and-Cytokine-Research/Society-of-Leukocyte-Biology, PORTUGAL, Lisbon, 17 October 2009 - 21 October 2009, http://dx.doi.org/10.1016/j.cyto.2009.07.352

Wu LE; Larance M; Ramm G; Raftery M; Guilhaus M; James DE, 2009, 'Proteomic Analysis of Adipokine Secretion in Insulin Resistance', in DIABETES, AMER DIABETES ASSOC, LA, New Orleans, pp. A333 - A334, presented at 69th Annual Meeting of the American-Diabetes-Association, LA, New Orleans, 05 June 2009 - 09 June 2009, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000266352602014&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Lim SY; Raftery M; Cai H; Thomas S; Hsu K; Geczy CL, 2008, 'S-nitrosylated S100A8-novel anti-inflammatory properties', in CYTOKINE, ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD, CANADA, Montreal, pp. 263 - 263, presented at 7th Joint Conference of the International-Cytokine-Society/International-Society-for-Interferon-and-Cytoklin-Research, CANADA, Montreal, 12 October 2008 - 16 October 2008, http://dx.doi.org/10.1016/j.cyto.2008.07.157

Kovach Z; Tu QV; Mendz GL; Okoli AS; Raftery MJ, 2008, 'A proteome and transcriptome analysis of the response of human liver carcinoma Huh7 and HepG2 cells to H. bilis coculture', in Helicobacter, Blackwell Publishing Inc, Malden, MA, USA, pp. 398 - 398, presented at Chronic Digestive Inflammation and Gastric Cancer, Riga, LATVIA, 18 September 2008 - 20 September 2008

Lim SY; Raftery MJ; Cai H; Thomas SR; Geczy C, 2008, 'S-nitrosylated S100A8 suppresses mast cell activation: Novel anti-inflammatory properties', in Journal of Leukocyte Biology, Federation American Society Exp Biol, Bethesda, MD, USA, pp. A18 - A18, presented at DAMPS and Alarmins Symposium, Pittsburgh, Pennsylvania, 30 August 2008 - 02 September 2008

Kaakoush NO; Raftery MJ; Mendz GL, 2007, 'Molecular responses of Campylobacter jejuni to cadmium stress', in Zoonoses and Public Health

Rahimi F; Raftery MJ; Halliday GM; Geczy C; Shepherd CE, 2006, 'Proteomic analysis of formalin-fixed brain tissue is potentially applicable to laser-microdissected specimens', in Proceedings of Aust Neuroscience Society, Sydney, pp. 41 - 41, presented at 26th Annual meeting of the Australian Neuroscience Society, Sydney, 31 January 2006 - 03 February 2006

Rahimi F; Goyette J; Raftery MJ; Shepherd CE; Halliday GM; Geczy C, 2005, 'S100A9, an inflammation-associated calcium-binding protein, is a binding partner for various redox-regulating proteins in familial Alzheimer's disease', in Journal of the Neurological Sciences, Elsevier Science BV, Amsterdam, Netherlands, pp. S298 - S298, presented at XVIIIth World Congress of Neurology, Sydney, 05 November 2005 - 11 November 2005

Pimanda JE; Annis DS; Raftery MJ; Mosher DF; Chesterman CN; Hogg PJ, 2002, 'The von Willebrand factor reducing activity of thrombospondin-1 centers around a free thiol at position 974.', in BLOOD, AMER SOC HEMATOLOGY, PENNSYLVANIA, PHILADELPHIA, pp. 257A - 258A, presented at 44th Annual Meeting of the American-Society-of-Hematology, PENNSYLVANIA, PHILADELPHIA, 06 December 2002 - 10 December 2002, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000179184700981&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Conference Posters

MAsoudi S; Zhong L; Raftery M; willcox M, 2013, 'Method development for analysis of tear proteins using Multiple Reaction Monitoring', presented at Association for Research in Vision and Ophthalmology, 05 May 2013 - 09 May 2013

Rahimi F; Goyette JD; Shepherd CE; Halliday GM; Geczy C; Raftery M, 2005, 'S100A9, an inflammation-associated calcium-binding protein, is a binding partner for various redox-regulating proteins in familial Alzheimer's disease', Vol. 238, pp. S298 - S298

Conference Presentations

Marcal H; Dinnes D; Raftery MJ; Labow R; McFarland CD; Santerre J; Mahler SM, 2005, 'The effect of material chemistry on cellular morphology and membrane surface-interface proteins: An innovative explorative proteomics technique', presented at 8th Annual Meeting of Tissue Engineering Society International, Shanghai, P.R. China, 22 October 2005 - 25 October 2005

Conference Abstracts

Karas P; Sivasubramaniam V; Tahmasbpour E; Thomson C; Ravipati A; Raftery M; Sasson S; Plit M; Darley D, 2026, '339.1: Clinical, histological and tissue proteomic features of decline after idiopathic acute lung allograft dysfunction.', in Transplantation, Wolters Kluwer, Vol. 110, http://dx.doi.org/10.1097/01.tp.0001251044.65716.2f

Thoms J; Hampton H; Yan F; Davidson S; Joshi S; Sarowar C; Lim XY; Nunez A; Kakadia P; Saw J; Bhuyan GS; Zou X; Ghodousi E; Jolly C; Koch F; Vafaee F; Pickford R; Raftery M; Hough S; Buckland G; Bailey M; Ghodke Y; Absar N; Vaughan L; Pasalic L; Fong C; Kenealy M; Hiwase D; Stoddart R; Mohammed S; Lee L; Passam F; Spring K; Skarratt K; Rebeiro P; Larsen S; Presgrave P; Stevenson W; Ling S; Tiley C; Fuller S; Roncolato F; Enjeti A; Hoenemann D; Lemech C; Curtis D; Bohlander S; Olivier J; Hertzberg M; Unnikrishnan A; Polizotto M; Pimanda J, 2024, 'LONGITUDINAL DRUG INCORPORATION, CLONAL COMPOSITION, AND DNA METHYLATION DYNAMICS IN MDS/ CMML PATIENTS TREATED WITH AZA', in EXPERIMENTAL HEMATOLOGY, ELSEVIER SCIENCE INC, IL, Chicago, Vol. 137, presented at 53rd Annual Scientific Meeting of the International-Society-for-Experimental-Hematology (ISEH), IL, Chicago, 29 August 2024 - 01 September 2024

Cree TM; Ravipati A; Philp AM; Thomson C; Raftery M; Plit M; Grey ST; Darley D, 2023, 'Proteomic Analysis of Eosinophilia in Transbronchial Biopsies Identifies Distinct Inflammatory Pathways', in The Journal of Heart and Lung Transplantation, Elsevier, Vol. 42, pp. s177, http://dx.doi.org/10.1016/j.healun.2023.02.1677

Truong P; Shen S; Joshi S; Afrasiabi A; Zhong L; Raftery MJ; Larsson J; Lock RB; Walkley CR; Rokny HA; Thoms JAI; Jolly CJ; Pimanda JE, 2022, 'Genome-Wide CRISPR-Cas9 Screening Identifies a Synergy between Hypomethylating Agents and Sumoylation Blockade in Myelodysplastic Syndromes and Acute Myeloid Leukemia', in Blood, American Society of Hematology, Vol. 140, pp. 220 - 221, http://dx.doi.org/10.1182/blood-2022-165713

Poljak A; Braidy N; Maclean C; Shepherd C; Raftery MJ; Sachdev PS, 2017, 'Proteomics of the Alzheimer's disease brain: Neuropathology and neuroresilience [Poster Abstract P2-155]', in Alzheimer's and Dementia, Elsevier, London, UK, Vol. 13, pp. P667 - P667, presented at Alzheimer's Association International Conference (AAIC) 2017, London, UK, 16 July 2017 - 20 July 2017, http://dx.doi.org/10.1016/j.jalz.2017.06.806

Jayasena T; Poljak A; Bustamante S; Braidy N; Raftery MJ; Sachdev PS, 2017, 'Sirtuin protein and related energy metabolite changes in the Alzheimer brain [Poster Abstract P2-182]', in Alzheimer's and Dementia, Elsevier, London, UK, Vol. 13, pp. P676 - P676, presented at lzheimer's Association International Conference (AAIC) 2017, London, UK, 16 July 2017 - 20 July 2017, http://dx.doi.org/10.1016/j.jalz.2017.06.833

Dolai S; Sia KC; Robbins AK; Zhong L; Heatley S; Vincent T; Hochgräfe F; Kurmasheva RT; White DL; Houghton PJ; Smith MA; Teachey DT; Daly RJ; Raftery MJ; Lock RB, 2014, 'Targeted Cancer Therapy in High-Risk Pediatric Leukemia Using Global Phosphotyrosine Profiling', in Blood, American Society of Hematology, Vol. 124, pp. 969, http://dx.doi.org/10.1182/blood.v124.21.969.969

Jayasena T; Poljak A; Zhong L; Braidy N; Smythe G; Raftery M; Sachdev P, 2013, 'Development of a targeted mass spectrometry method for accurate quantification of human sirtuins in biological samples [Abstract P2-035]', in Alzheimer's & Dementia, Boston, MA, USA, Vol. 9, pp. P357 - P357, presented at Alzheimer’s Association International Conference (AAIC) 2013, Boston, MA, USA, 13 July 2013 - 18 July 2013, http://dx.doi.org/10.1016/j.jalz.2013.05.677

Song F; Poljak A; Kochan N; Jayasena T; Raftery M; Brodaty H; Smythe GA; Sachdev PS, 2010, 'Screening plasma for biomarkers of mild cognitive impairment and Alzheimer's disease by quantitative proteomic methods [Abstract O3-03-03]', in Alzheimer's & Dementia, Honolulu, Hawaii, USA, Vol. 6, pp. S129 - S130, presented at Alzheimer’s Association International Conference (AAIC) 2010, Honolulu, Hawaii, USA, 10 July 2010 - 15 July 2010, http://dx.doi.org/10.1016/j.jalz.2010.05.406

Working Papers

Capraro A; Wong SL; Adhikari A; Allan KM; Patel HR; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan RM; Turville S; Vittorio O; Bull RA; Kaakoush N; Rawlinson WD; Tedla N; Vafaee F; Waters SA, Ageing impairs the airway epithelium defence response to SARS-CoV-2, Cold Spring Harbor Laboratory, http://dx.doi.org10.1101/2021.04.05.437453

Preprints

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2024, Proteomic comparison of epidemic Australian Bordetella pertussis biofilm cells, http://dx.doi.org/10.1101/2024.02.19.581093

McIntyre K; Waters S; Zhong L; Hart-Smith G; Raftery M; Graves JM; Waters P, 2023, Functional coherence of the Xist and RSX protein interactomes: X chromosome inactivation in marsupials, http://dx.doi.org/10.1101/2023.10.08.560959

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2022, Integrating proteomic data with metabolic modelling provides insight into key pathways of Bordetella pertussis biofilms, http://dx.doi.org/10.1101/2022.05.27.493021

Truong P; Shen S; Joshi S; Islam I; Zhong L; Raftery MJ; Afrasiabi A; Alinejad-Rokny H; Nguyen M; Zou X; Bhuyan GS; Sarowar CH; Ghodousi ES; Stonehouse O; Mohamed S; Toscan CE; Connerty P; Kakadia PM; Bohlander SK; Michie KA; Larsson J; Lock RB; Walkley CR; Thoms JAI; Jolly CJ; Pimanda JE, Genome-Wide CRISPR-Cas9 Screening Identifies a Synergy between Hypomethylating Agents and SUMOylation Blockade in MDS/AML, http://dx.doi.org/10.1101/2024.04.17.589858

Mercier C; Thies D; Zhong L; Raftery MJ; Cavicchioli R; Erdmann S, In depth characterization of an archaeal virus-host system reveals numerous virus exclusion mechanisms, http://dx.doi.org/10.1101/2022.10.18.512658

Tahmasbpour E; Philp A; Cree T; Sivasubramaniam V; Thomson C; Plit M; Ravipati A; Raftery M; Darley D, Proteomic analysis of transbronchial biopsy tissue reveals a distinct proteome and mechanistic pathways in high-grade eosinophilic inflammation after lung transplantation, http://dx.doi.org/10.21203/rs.3.rs-3952576/v1

Umashankar B; Capraro A; Vijayan A; Wong SL; Nielsen BU; Zhong L; Raftery M; Allan K; Ooi CY; Sivam S; Visser S; Prentice BJ; Fawcett L; Kovacevic Z; Eliasson L; Faurholt-Jepsen D; Jaffe A; Shaw JA; Vafaee F; Waters SA, Serum Exosomal Multi-Omic Signatures Stratify Glucose Tolerance in Cystic Fibrosis and Reveal Partial Therapeutic Reprogramming by CFTR Modulators, http://dx.doi.org/10.1101/2025.07.07.25331056

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