Researcher

Keywords

Fields of Research (FoR)

Bioinformatics and computational biology, Statistical and quantitative genetics, Genomics and transcriptomics, Immunogenetics (incl. genetic immunology)

Biography

Angli Xue is a Postdoc Scientist and NHMRC Investigator Fellow (EL1) in Powell Lab at the Garvan Institute of Medical Research. He obtained his PhD in 2021 at The University of Queensland working with Prof. Jian Yang in the field of statistical genetics. During the PhD, he utilized statistical and computational methods to dissect the genetic architecture of human complex diseases, perform meta-analyses and integrate multi-omics data to...view more

Angli Xue is a Postdoc Scientist and NHMRC Investigator Fellow (EL1) in Powell Lab at the Garvan Institute of Medical Research. He obtained his PhD in 2021 at The University of Queensland working with Prof. Jian Yang in the field of statistical genetics. During the PhD, he utilized statistical and computational methods to dissect the genetic architecture of human complex diseases, perform meta-analyses and integrate multi-omics data to identify associated gene loci and gene regulatory mechanisms. He conducted the largest genetic study of type 2 diabetes and highlighted three T2D-associated genes with plausible regulatory mechanisms where a genetic variant exerts an effect on T2D through epigenetic regulation of gene expression. He also co-developed a software tool (GSMR2) for evaluating the causal relationship between modifiable risk factors and complex diseases. He was awarded the DeLill Nasser Award for Professional Development in Genetics and the Chinese Scholarship Council Award for Outstanding Students Abroad in recognization of his PhD work. Before moving to Australia, he completed the BSc at Zhejiang University, China in 2015.

Angli's current research is focused on understanding the genetic regulation at the single-cell level. He is leading the TenK10K multiome project, which utilises large-scale single-cell multiomics data + whole genome sequencing to identify genetic association with chromatin accessibility and dissect the regulatory mechanisms in human circulating immune cells. The phase 2 study will curate single-cell profiling for > 50 million cells from 10,000 individuals. 

Angli is actively participating in scientific community service and serves as an early career reviewer in GENETICS. He was also an ad hoc reviewer for many journals including Nature Medicine, Nature Human Behavior, Nature Communications, Nucleic Acids Research, G3, EBioMedicine, etc.


My Grants

1. NHMRC Investigator Grant – Emerging Leadership Level 1 (2025 - 2029)

Identifying and characterising gene regulatory networks of autoimmune diseases at single-cell resolution

 

2. Ramaciotti Health Investment Grant (2025 - 2027)

Facilitating drug repurposing for autoimmune disease patients by utilising multi-omics markers

 

3. National Computational Merit Allocation Scheme (NCMAS), ECR Stream (2026 - 2027)

Computational resources of 1,000k Service Units

 


My Qualifications

2021 - PhD (Statistical Genetics), The University of Queensland - Australia

2015 - BSc (Agronomy), Zhejiang University - China            

 

My Awards

2025 - The Early-Career Investigator Award, Garvan Institute of Medical Research

2025 - ASI (Australian Society of Immunology) Career Advancement Award

2025 - Reviewer’s Choice Award, American Society of Human Genetics (ASHG)

2025 - ASI (Australian Society of Immunology) Postdoc Travel Award

2023 - CASS (Contributing to Australian Scholarship and Science) Travel Award

2021 - DeLill Nasser Award for Professional Development in Genetics, Genetics Society of America

2021 - Nomination for Dean's Award for Outstanding HDR Theses, The University of Queensland

2020 - Chinese Scholarship Council Award for Outstanding Students Abroad

2020 - UQ IMB Writing-up Award

2019 - UQ IMB Travel Award for International Conference

2018 - UQ IMB Research Higher Degree Top-Up Scholarships

2018 - Outstanding Contribution in Reviewing Award, EBioMedicine Journal

2016 - University of Queensland International (UQI) Scholarship   

2015 - Outstanding Thesis Award for Bachelor Degree, Zhejiang University   

2015 - Summer Program Scholarship of the Council for Higher Education, the Government of Israel

2014 - Scholarship for Outstanding Performance in Research and Innovation, Zhejiang University

2013 - Gold Medal & Best Biobrick Measurement Approach, International Genetically Engineered Machine Competition, Asian region


My Research Activities

Statistical genetics

Computational biology

Statistical modelling

Human complex traits

Single-cell genomics

eQTL mapping

Gene regulatory network

Chromatin accessibility


My Research Supervision


Supervision keywords


Areas of supervision

We have several exciting projects including but not limited to:

1. Investigating the genetic control of gene expression (eQTL) at the single-cell resolution;

2. Establishing single-cell multi-omics atlas for human peripheral blood mononuclear cells;

3. Integrating multi-omics data to discover novel genetic regulatory mechanisms;

4. Developing statistical and computational tools to identify the genetic control of chromatin accessibility;

5. Inferring cell-type-specific gene regulatory networks (GRN) for autoimmune diseases.


Currently supervising

Cell-type-specific genetic regulation in Crohn's disease (2022 - 2026)

Doctor of Philosophy — Associate supervisor

Primary supervisor: Professor Joseph Powell

 

 

Unveiling disease mechanisms through deep learning and single-cell genetics (2024 - 2028)

Doctor of Philosophy — Associate supervisor

Primary supervisor: Professor Joseph Powell

 

My Engagement

Organiser of OzSingleCell Hackathon 2024 (Dec 2024)

ASI Awards Judging Panel for ASI postgraduate travel award, Australian and New Zealand Society for Immunology (2024 - now)

Team co-lead in The Systems Immunology Hackathon by OzSinglCell and ASI (2022 - now)

Early career reviewer panel in the Statistical Genetics & Genomics section for the journal GENETICS (2019 - now)

Ad hoc reviewer for Nature Medicine, Nature Human Behavior, Nucleic Acids Research, Diabetes, EBioMedicine, Genetics, G3: Genes,Genomes,Genetics, NAR genomics and bioinformatics, Human Genetics, Clinical Obesity, Journal of Human Genetics.

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Location

384 Victoria Street
Darlinghurst
NSW
2010