By Dr Hasindu Malshan Gamaarachchi

Preprints

Gamaarachchi H; Ferguson J; Samarakoon H; Liyanage K; Deveson I, 2023, Squigulator: simulation of nanopore sequencing signal data with tunable noise parameters, , http://dx.doi.org/10.1101/2023.05.09.539953

Wong B; Ferguson J; Gamaarachchi H; Deveson I, 2023, Streamlining remote nanopore data access withslow5curl, , http://dx.doi.org/10.1101/2023.11.28.569128

Shih PJ; Saadat H; Parameswaran S; Gamaarachchi H, 2022, Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices, , http://arxiv.org/abs/2211.07340v1

Gong J; Saadat H; Gamaarachchi H; Javaid H; Hu XS; Parameswaran S, 2022, ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference, , http://dx.doi.org/10.48550/arxiv.2209.04161

Senanayake A; Gamaarachchi H; Herath D; Ragel R, 2022, DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing, , http://dx.doi.org/10.1101/2022.10.24.513498

Samarakoon H; Ferguson J; Jenner S; Amos T; Parameswaran S; Gamaarachchi H; Deveson I, 2022, Flexible and efficient handling of nanopore sequencing signal data with slow5tools, , http://dx.doi.org/10.1101/2022.06.19.496732

Gamaarachchi H, 2021, Computer Architecture-Aware Optimisation of DNA Analysis Systems, , http://dx.doi.org/10.48550/arxiv.2101.05012

Stevanovski I; Chintalaphani S; Gamaarachchi H; Ferguson J; Pineda S; Scriba C; Tchan M; Fung V; Ng K; Cortese A; Houlden H; Dobson-Stone C; Fitzpatrick L; Halliday G; Ravenscroft G; Davis M; Laing N; Fellner A; Kennerson M; Kumar K; Deveson I, 2021, Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing, , http://dx.doi.org/10.1101/2021.09.27.21263187

Bull R; Adikari T; Ferguson J; Hammond J; Stevanovski I; Beukers A; Naing Z; Yeang M; Verich A; Gamaarachchi H; Kim KW; Luciani F; Stelzer-Braid S; Eden J-S; Rawlinson W; van Hal S; Deveson I, 2020, Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis, , http://dx.doi.org/10.1101/2020.08.04.236893

Bayat A; Gamaarachchi H; Deshpande N; Wilkins M; Parameswaran S, 2020, Methods for De-novo Genome Assembly, , http://dx.doi.org/10.20944/preprints202006.0324.v1

Gamaarachchi H; Ganegoda H, 2018, Power Analysis Based Side Channel Attack, , http://dx.doi.org/10.48550/arxiv.1801.00932

Gamaarachchi H; Ragel R; Jayasinghe D, 2014, Accelerating Correlation Power Analysis Using Graphics Processing Units, , http://dx.doi.org/10.48550/arxiv.1412.7682

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