Select Publications
Preprints
2024, Leveraging Basecaller’s Move Table to Generate a Lightweight k-mer Model, , http://dx.doi.org/10.1101/2024.06.30.601452
,2023, The landscape of genomic structural variation in Indigenous Australians, , http://dx.doi.org/10.1101/2023.10.17.562810
,2023, A CCG expansion inABCD3causes oculopharyngodistal myopathy in individuals of European ancestry, , http://dx.doi.org/10.1101/2023.10.09.23296582
,2023, minimap2-fpga: Integrating hardware-accelerated chaining for efficient end-to-end long-read sequence mapping, , http://dx.doi.org/10.1101/2023.05.30.542681
,2023, Accelerated nanopore basecalling with SLOW5 data format, , http://dx.doi.org/10.1101/2023.02.06.527365
,2023, Extensive DNA methylome rearrangement during early lamprey embryogenesis, , http://dx.doi.org/10.1101/2023.05.25.542242
,2023, Squigulator: simulation of nanopore sequencing signal data with tunable noise parameters, , http://dx.doi.org/10.1101/2023.05.09.539953
,2023, Streamlining remote nanopore data access withslow5curl, , http://dx.doi.org/10.1101/2023.11.28.569128
,2022, Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices, , http://arxiv.org/abs/2211.07340v1
,2022, ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference, , http://dx.doi.org/10.48550/arxiv.2209.04161
,2022, DeepSelectNet: Deep Neural Network Based Selective Sequencing for Oxford Nanopore Sequencing, , http://dx.doi.org/10.1101/2022.10.24.513498
,2022, Flexible and efficient handling of nanopore sequencing signal data with slow5tools, , http://dx.doi.org/10.1101/2022.06.19.496732
,2021, Computer Architecture-Aware Optimisation of DNA Analysis Systems, , http://dx.doi.org/10.48550/arxiv.2101.05012
,2021, Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing, , http://dx.doi.org/10.1101/2021.09.27.21263187
,2020, Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis, , http://dx.doi.org/10.1101/2020.08.04.236893
,2020, Methods for De-novo Genome Assembly, , http://dx.doi.org/10.20944/preprints202006.0324.v1
,2018, Power Analysis Based Side Channel Attack, , http://dx.doi.org/10.48550/arxiv.1801.00932
,2014, Accelerating Correlation Power Analysis Using Graphics Processing Units, , http://dx.doi.org/10.48550/arxiv.1412.7682
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