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Journal articles

Williams RD; Markus AF; Yang C; Duarte-Salles T; DuVall SL; Falconer T; Jonnagaddala J; Kim C; Rho Y; Williams AE; Machado AA; An MH; Aragón M; Areia C; Burn E; Choi YH; Drakos I; Abrahão MTF; Fernández-Bertolín S; Hripcsak G; Kaas-Hansen BS; Kandukuri PL; Kors JA; Kostka K; Liaw ST; Lynch KE; Machnicki G; Matheny ME; Morales D; Nyberg F; Park RW; Prats-Uribe A; Pratt N; Rao G; Reich CG; Rivera M; Seinen T; Shoaibi A; Spotnitz ME; Steyerberg EW; Suchard MA; You SC; Zhang L; Zhou L; Ryan PB; Prieto-Alhambra D; Reps JM; Rijnbeek PR, 2022, 'Seek COVER: using a disease proxy to rapidly develop and validate a personalized risk calculator for COVID-19 outcomes in an international network', BMC Medical Research Methodology, vol. 22, pp. 35, http://dx.doi.org/10.1186/s12874-022-01505-z

Sandarenu P; Millar EKA; Song Y; Browne L; Beretov J; Lynch J; Graham PH; Jonnagaddala J; Hawkins N; Huang J; Meijering E, 2022, 'Survival prediction in triple negative breast cancer using multiple instance learning of histopathological images', Scientific Reports, vol. 12, pp. 14527, http://dx.doi.org/10.1038/s41598-022-18647-1

Li X; Jonnagaddala J; Cen M; Zhang H; Xu S, 2022, 'Colorectal Cancer Survival Prediction Using Deep Distribution Based Multiple-Instance Learning', ENTROPY, vol. 24, http://dx.doi.org/10.3390/e24111669

Barsasella D; Bah K; Mishra P; Uddin M; Dhar E; Suryani DL; Setiadi D; Masturoh I; Sugiarti I; Jonnagaddala J; Syed-Abdul S, 2022, 'A Machine Learning Model to Predict Length of Stay and Mortality among Diabetes and Hypertension Inpatients', Medicina (Kaunas, Lithuania), vol. 58, pp. 1568 - 1568, http://dx.doi.org/10.3390/medicina58111568

Li X; Jonnagaddala J; Yang S; Zhang H; Xu XS, 2022, 'A retrospective analysis using deep-learning models for prediction of survival outcome and benefit of adjuvant chemotherapy in stage II/III colorectal cancer', Journal of Cancer Research and Clinical Oncology, vol. 148, pp. 1955 - 1963, http://dx.doi.org/10.1007/s00432-022-03976-5

Kadappu P; Jonnagaddala J; Liaw ST; Cochran BJ; Rye KA; Ong KL, 2022, 'Statin Prescription Patterns and Associations with Subclinical Inflammation', Medicina (Lithuania), vol. 58, pp. 1096 - 1096, http://dx.doi.org/10.3390/medicina58081096

Kuziemsky C; Liaw ST; Leston M; Pearce C; Jonnagaddala J; de Lusignan S, 2022, 'Towards Equitable and Resilient Digital Primary Care Systems: An International Comparison and Insight for Moving Forward', Yearbook of medical informatics, vol. 31, pp. 47 - 59, http://dx.doi.org/10.1055/s-0042-1742502

Lu Y; Van Zandt M; Liu Y; Li J; Wang X; Chen Y; Chen Z; Cho J; Dorajoo SR; Feng M; Hsu MH; Hsu JC; Iqbal U; Jonnagaddala J; Li YC; Liaw ST; Lim HS; Ngiam KY; Nguyen PA; Park RW; Pratt N; Reich C; Rhee SY; Sathappan SMK; Shin SJ; Tan HX; You SC; Zhang X; Krumholz HM; Suchard MA; Xu H, 2022, 'Analysis of Dual Combination Therapies Used in Treatment of Hypertension in a Multinational Cohort', JAMA Network Open, vol. 5, pp. E223877, http://dx.doi.org/10.1001/jamanetworkopen.2022.3877

Barsasella D; Iman AT; Fadly F; Uddin M; Mohammed A; Shaik T; Saputra H; Malwade S; Dhar E; Zakiah ; Nurhadi ; Jonnagaddala J; Syed-Abdul S, 2022, 'Information Flow and Data Gaps in COVID-19 Recording and Reporting at National and Provincial Levels in Indonesia', Healthcare (Switzerland), vol. 10, http://dx.doi.org/10.3390/healthcare10020204

Morales DR; Ostropolets A; Lai L; Sena A; Duvall S; Suchard M; Verhamme K; Rjinbeek P; Posada J; Ahmed W; Alshammary T; Alghoul H; Alser O; Areia C; Blacketer C; Burn E; Casajust P; You SC; Dawoud D; Golozar A; Gong M; Jonnagaddala J; Lynch K; Matheny M; Minty E; Nyberg F; Uribe A; Recalde M; Reich C; Scheumie M; Shah K; Shah N; Schilling L; Vizcaya D; Zhang L; Hripcsak G; Ryan P; Prieto-Alhambra D; Durate-Salles T; Kostka K, 2022, 'Characteristics and outcomes of COVID-19 patients with and without asthma from the United States, South Korea, and Europe', Journal of Asthma, pp. 1 - 11, http://dx.doi.org/10.1080/02770903.2021.2025392

Jonnagaddala J; Chen A; Batongbacal S; Nekkantti C, 2021, 'The OpenDeID corpus for patient de-identification', Scientific Reports, vol. 11, http://dx.doi.org/10.1038/s41598-021-99554-9

Li X; Jonnagaddala J; Yang S; Zhang H; Xu XS, 2021, 'A Retrospective Analysis using Deep-Learning Models for Prediction of Survival Outcome and Benefit of Adjuvant Chemotherapy in Stage II/III Colorectal Cancer', arXiv, http://dx.doi.org/10.48550/arxiv.2111.03532

Roel E; Pistillo A; Recalde M; Sena AG; Fernández-Bertolín S; Aragón M; Puente D; Ahmed WUR; Alghoul H; Alser O; Alshammari TM; Areia C; Blacketer C; Carter W; Casajust P; Culhane AC; Dawoud D; DeFalco F; DuVall SL; Falconer T; Golozar A; Gong M; Hester L; Hripcsak G; Tan EH; Jeon H; Jonnagaddala J; Lai LYH; Lynch KE; Matheny ME; Morales DR; Natarajan K; Nyberg F; Ostropolets A; Posada JD; Prats-Uribe A; Reich CG; Rivera DR; Schilling LM; Soerjomataram I; Shah K; Shah NH; Shen Y; Spotniz M; Subbian V; Suchard MA; Trama A; Zhang L; Zhang Y; Ryan PB; Prieto-Alhambra D; Kostka K; Duarte-Salles T, 2021, 'Characteristics and outcomes of over 300,000 patients with COVID-19 and history of cancer in the United States and Spain', Cancer Epidemiology Biomarkers and Prevention, vol. 30, pp. 1884 - 1894, http://dx.doi.org/10.1158/1055-9965.EPI-21-0266

Barsasella D; Gupta S; Malwade S; Aminin ; Susanti Y; Tirmadi B; Mutamakin A; Jonnagaddala J; Syed-Abdul S, 2021, 'Predicting length of stay and mortality among hospitalized patients with type 2 diabetes mellitus and hypertension', International Journal of Medical Informatics, vol. 154, http://dx.doi.org/10.1016/j.ijmedinf.2021.104569

Lu Y; Li J; Wang X; Cho J; Dorajoo SR; Feng M; Hsu M-H; Hsu JC; Hwang J; Iqbal U; Jason CZ; Jonnagaddala J; Li Y-C; Liaw S-T; Lim H-S; Ngiam KY; Nguyen P-A; Park RW; Pratt N; Reich C; Rhee SY; Kumaran Sathappan SM; Shin SJ; Tan HX; You SC; Zhang X; Krumholz H; Suchard M; Liu Y; Van Zandt M; Xu H, 2021, 'Characterizing Dual Combination Therapy Use in Treatment Escalation of Hypertension: Real-World Evidence from Multinational Cohorts', Cold Spring Harbor Laboratory, http://dx.doi.org/10.1101/2021.06.28.21258167

Prats-Uribe A; Sena AG; Lai LYH; Ahmed WUR; Alghoul H; Alser O; Alshammari TM; Areia C; Carter W; Casajust P; Dawoud D; Golozar A; Jonnagaddala J; Mehta PP; Gong M; Morales DR; Nyberg F; Posada JD; Recalde M; Roel E; Shah K; Shah NH; Schilling LM; Subbian V; Vizcaya D; Zhang L; Zhang Y; Zhu H; Liu L; Cho J; Lynch KE; Matheny ME; You SC; Rijnbeek PR; Hripcsak G; Lane JCE; Burn E; Reich C; Suchard MA; Duarte-Salles T; Kostka K; Ryan PB; Prieto-Alhambra D, 2021, 'Use of repurposed and adjuvant drugs in hospital patients with covid-19: Multinational network cohort study', The BMJ, vol. 373, http://dx.doi.org/10.1136/bmj.n1038

Reps JM; Kim C; Williams RD; Markus AF; Yang C; Duarte-Salles T; Falconer T; Jonnagaddala J; Williams A; Fernández-Bertolín S; DuVall SL; Kostka K; Rao G; Shoaibi A; Ostropolets A; Spotnitz ME; Zhang L; Casajust P; Steyerberg EW; Nyberg F; Kaas-Hansen BS; Choi YH; Morales D; Liaw ST; Fernandes Abrahão MT; Areia C; Matheny ME; Lynch KE; Aragón M; Park RW; Hripcsak G; Reich CG; Suchard MA; You SC; Ryan PB; Prieto-Alhambra D; Rijnbeek PR, 2021, 'Implementation of the COVID-19 vulnerability index across an international network of health care data sets: Collaborative external validation study', JMIR Medical Informatics, vol. 9, http://dx.doi.org/10.2196/21547

Liaw T; Guo J; Ansari S; Jonnagaddala J; Godinho M; Borelli Jr A; de Lusignan S; Capurro D; Liyanage H; Bhattal N; Bennett V; Chan J; Kahn M, 2021, 'Quality assessment of real-world data repositories across the data life cycle: A literature review', Journal of the American Medical Informatics Association, http://dx.doi.org/10.1093/jamia/ocaa340

Quinn CM; Porwal M; Meagher NS; Hettiaratchi A; Power C; Jonnaggadala J; McCullough S; Macmillan S; Tang K; Liauw W; Goldstein D; Zeps N; Crowe PJ, 2021, 'Moving with the Times: The Health Science Alliance (HSA) Biobank, Pathway to Sustainability', Biomarker Insights, vol. 16, pp. 1 - 10, http://dx.doi.org/10.1177/11772719211005745

Biro T; Austin CC; Pickering B; Bernier A; Bezuidenhout L; Casorrán C; Crawley FP; David R; Engelhardt C; Mitrea G; Mochmann IC; Nagrani R; O'Brien-Uhlmansiek M; Parker S; Wang M; Castro LJ; Cournia Z; Dharmawardena K; Diallo G; Dillo I; Gonzalez-Beltran A; Gururaj A; Gutam S; Harrower N; Jonnagaddala J; McNeill K; Mietchen D; Pienta A; Polydoratou P; Tovani-Palone MR, 2021, 'Radical collaboration during a global health emergency: Development of the RDA COVID-19 data sharing recommendations and guidelines', Open Research Europe, vol. 1, pp. 69 - 69, http://dx.doi.org/10.12688/openreseurope.13369.1

ALLA NLV; CHEN A; BATONGBACAL S; NEKKANTTI C; Dai H-J; JONNAGADDALA J, 2021, 'Cohort selection for construction of a clinical natural language processing corpus', Computer Methods and Programs in Biomedicine Update, vol. 1, pp. 100024 - 100024, http://dx.doi.org/10.1016/j.cmpbup.2021.100024

Tan EH; Sena AG; Prats-Uribe A; You SC; Kostka K; Reich C; Duvall SL; Lynch KE; Matheny ME; Duarte-Salles T; others , 2021, 'COVID-19 in patients with autoimmune diseases: characteristics and outcomes in a multinational network of cohorts across three countries', Rheumatology

Jonnagaddala J; Godinho MA; Liaw S-T, 2021, 'From telehealth to virtual primary care in Australia? A Rapid Scoping Review', International Journal of Medical Informatics, pp. 104470 - 104470

Liaw S-T; Kuziemsky C; Schreiber R; Jonnagaddala J; Liyanage H; Chittalia A; Bahniwal R; He JW; Ryan BL; Lizotte DJ; others , 2021, 'Primary Care Informatics Response to Covid-19 Pandemic: Adaptation, Progress, and Lessons from Four Countries with High ICT Development', Yearbook of Medical Informatics

Dai HJ; Lee YQ; Nekkantti C; Jonnagaddala J, 2020, 'Family history information extraction with neural attention and an enhanced relation-side scheme: Algorithm development and validation', JMIR Medical Informatics, vol. 8, pp. e21750, http://dx.doi.org/10.2196/21750

Golozar A; Lai LY; Sena AG; Vizcaya D; Schilling LM; Huser V; Nyberg F; Duvall SL; Morales DR; Alshammari TM; Abedtash H; Ahmed W-U-R; Alser O; Alghoul H; Zhang Y; Gong M; Guan Y; Areia C; Jonnagaddala J; Shah K; Lane JCE; Prats-Uribe A; Posada JD; Shah NH; Subbian V; Zhang L; Fernandes Abrahão MT; Rijnbeek PR; You SC; Casajust P; Roel E; Recalde M; Fernández-Bertolín S; Andryc A; Thomas JA; Wilcox AB; Fortin S; Blacketer C; DeFalco F; Natarajan K; Falconer T; Spotnitz M; Ostropolets A; Hripcsak G; Suchard M; Lynch KE; Matheny ME; Williams A; Reich C; Duarte-Salles T; Kostka K; Ryan PB; Prieto-Alhambra D, 2020, 'Baseline phenotype and 30-day outcomes of people tested for COVID-19: an international network cohort including >3.32 million people tested with real-time PCR and >219,000 tested positive for SARS-CoV-2 in South Korea, Spain and the United States.', medRxiv, http://dx.doi.org/10.1101/2020.10.25.20218875

Godinho MA; Jonnagaddala J; Gudi N; Islam R; Narasimhan P; Liaw ST, 2020, 'mHealth for Integrated People-Centred Health Services in the Western Pacific: A Systematic Review', International Journal of Medical Informatics, vol. 142, pp. 104259 - 104259, http://dx.doi.org/10.1016/j.ijmedinf.2020.104259

Yao J; Zhu X; Jonnagaddala J; Hawkins N; Huang J, 2020, 'Whole slide images based cancer survival prediction using attention guided deep multiple instance learning networks', Medical Image Analysis, vol. 65, http://dx.doi.org/10.1016/j.media.2020.101789

Jonnagaddala J; Guo GN; Batongbacal S; Marcelo A; Liaw ST, 2020, 'Adoption of enterprise architecture for healthcare in AeHIN member countries', BMJ Health and Care Informatics, vol. 27, http://dx.doi.org/10.1136/bmjhci-2020-100136

Reps JM; Kim C; Williams RD; Markus AF; Yang C; Salles TD; Falconer T; Jonnagaddala J; Williams A; Fernandez-Bertolin S; others , 2020, 'Can we trust the prediction model? Demonstrating the importance of external validation by investigating the COVID-19 Vulnerability (C-19) Index across an international network of observational healthcare datasets', medRxiv

Lai LYH; Golozar A; Sena AG; Margulis AV; Haro N; Casajust P; Valveny N; Prats-Uribe A; Minty EP; Ahmed W-U-R; Alshammari TM; Morales DR; Alghoul H; Alser O; Dawoud D; Zhang L; Posada JD; Shah N; Blacketer C; Areia C; Subbian V; Nyberg F; Lane JCE; Suchard MA; Gong M; Recalde M; Jonnagaddala J; Shah K; Roel E; Vizcaya D; Fortin S; Cheng R-FJ; Reich C; Hripcsak G; Rijnbeek P; Ryan PB; Kostka K; Duarte-Salles T; PRIETO-ALHAMBRA D, 2020, 'Clinical characteristics, symptoms, management and health outcomes in 8,598 pregnant women diagnosed with COVID-19 compared to 27,510 with seasonal influenza in France, Spain and the US: a network cohort analysis', medRxiv, http://dx.doi.org/10.1101/2020.10.13.20211821

Dai H-J; Wang F-D; Chen C-W; Su C-H; Wu C-S; Jonnagaddala J, 2020, 'Cohort Selection for Clinical Trials Using Multiple Instance Learning', Journal of Biomedical Informatics, vol. 107, pp. 103438 - 103438, http://dx.doi.org/10.1016/j.jbi.2020.103438

Sieberts SK; Schaff J; Duda M; Pataki BÁ; Sun M; Snyder P; Daneault J-F; Parisi F; Costante G; Rubin U; others , 2020, 'Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge', npj Digital Medicine

Liaw S-T; Liyanage H; Kuziemsky C; Terry AL; Schreiber R; Jonnagaddala J; de Lusignan S, 2020, 'Ethical Use of Electronic Health Record Data and Artificial Intelligence: Recommendations of the Primary Care Informatics Working Group of the International Medical Informatics Association', Yearbook of Medical Informatics

Prats-Uribe A; G. Sena A; Yin Hui Lai L; Ahmed W-U-R; Alghoul H; Alser O; Alshammari TM; Areia C; Carter W; Casajust P; Dawoud D; Golozar A; Jonnagaddala J; Mehta P; Menchung G; Morales DR; Nyberg F; Posada JD; Recalde M; Roel E; Shah K; Shah N; Schilling LM; Subbian V; Vizcaya D; Williams A; Zhang L; Zhang Y; Zhu H; Liu L; Rijnbeek P; Hripcsak G; Lane JCE; Burn E; Reich C; Suchard MA; Duarte-Salles T; Kostka K; Ryan PB; PRIETO-ALHAMBRA D, 2020, 'Heterogeneity and temporal variation in the management of COVID-19: a multinational drug utilization study including 71,921 hospitalized patients from China, South Korea, Spain, and the United States of America', medRxiv, http://dx.doi.org/10.1101/2020.09.15.20195545

Williams RD; Markus AF; Yang C; Salles TD; Falconer T; Jonnagaddala J; Kim C; Rho Y; Williams A; An MH; others , 2020, 'Seek COVER: Development and validation of a personalized risk calculator for COVID-19 outcomes in an international network', medRxiv

Wakamiya S; Matsune S; Okubo K; Aramaki E, 2019, 'Causal Relationships Among Pollen Counts, Tweet Numbers, and Patient Numbers for Seasonal Allergic Rhinitis Surveillance: Retrospective Analysis.', J Med Internet Res, vol. 21, pp. e10450, http://dx.doi.org/10.2196/10450

Liyanage H; Liaw S-T; Jonnagaddala J; Schreiber R; Kuziemsky C; Terry AL; de Lusignan S, 2019, 'Artificial Intelligence in Primary Health Care: Perceptions, Issues, and Challenges', Yearbook of medical informatics, vol. 28, pp. 041 - 046, http://dx.doi.org/10.1055/s-0039-1677901

Guo GN; Jonnagaddala J; Farshid S; Huser V; Reich C; Liaw S-T, 2019, 'Comparison of the cohort selection performance of Australian Medicines Terminology to Anatomical Therapeutic Chemical mappings', Journal of the American Medical Informatics Association, vol. 26, pp. 1237 - 1246, http://dx.doi.org/10.1093/jamia/ocz143

Dai H-J; Wang C-K; Chang N-W; Huang M-S; Jonnagaddala J; Wang F-D; Hsu W-L, 2019, 'Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature', Database, vol. 2019, http://dx.doi.org/10.1093/database/baz030

Vo K; Jonnagaddala J; Liaw S-T, 2019, 'Statistical supervised meta-ensemble algorithm for medical record linkage', Journal of biomedical informatics, vol. 95, pp. 103220 - 103220, http://dx.doi.org/10.1016/j.jbi.2019.103220

Warren I; Meads A; Whittaker R; Dobson R; Ameratunga S, 2018, 'Behavior Change for Youth Drivers: Design and Development of a Smartphone-Based App (BackPocketDriver).', JMIR Form Res, vol. 2, pp. e25, http://dx.doi.org/10.2196/formative.9660

Dai H-J; Jonnagaddala J, 2018, 'Assessing the severity of positive valence symptoms in initial psychiatric evaluation records: Should we use convolutional neural networks?', PloS one, vol. 13, pp. e0204493 - e0204493, http://dx.doi.org/10.1371/journal.pone.0204493

Tchechmedjiev A; Abdaoui A; Emonet V; Melzi S; Jonnagaddala J; Jonquet C, 2018, 'Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+', Bioinformatics, vol. 34, pp. 1962 - 1965, http://dx.doi.org/10.1093/bioinformatics/bty009

Lee J, 2017, 'Patient-Specific Predictive Modeling Using Random Forests: An Observational Study for the Critically Ill.', JMIR Med Inform, vol. 5, pp. e3, http://dx.doi.org/10.2196/medinform.6690

Dai H-J; Su EC-Y; Uddin M; Jonnagaddala J; Wu C-S; Syed-Abdul S, 2017, 'Exploring associations of clinical and social parameters with violent behaviors among psychiatric patients', Journal of biomedical informatics, vol. 75, pp. S149 - S159, http://dx.doi.org/10.1016/j.jbi.2017.08.009

Kim S; Islamaj Do\ugan R; Chatr-Aryamontri A; Chang CS; Oughtred R; Rust J; Batista-Navarro R; Carter J; Ananiadou S; Matos S; others , 2016, 'BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID', Database, vol. 2016, http://dx.doi.org/10.1093/database/baw121

Dai H-J; Touray M; Jonnagaddala J; Syed-Abdul S, 2016, 'Feature engineering for recognizing adverse drug reactions from twitter posts', Information, vol. 7, pp. 27 - 27, http://dx.doi.org/10.3390/info7020027

Jonnagaddala J; Jue TR; Chang N-W; Dai H-J, 2016, 'Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion', Database, vol. 2016, http://dx.doi.org/10.1093/database/baw112

Dai H-J; Su C-H; Lai P-T; Huang M-S; Jonnagaddala J; Rose Jue T; Rao S; Chou H-J; Milacic M; Singh O; others , 2016, 'MET network in PubMed: a text-mined network visualization and curation system', Database, vol. 2016, http://dx.doi.org/10.1093/database/baw090


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