Select Publications
Book Chapters
2024, 'Approaches for Evaluating Visit-to-Visit Blood Pressure Variability as a Cardiovascular Disease Risk Factor: A Scoping Review', in , pp. 349 - 353, http://dx.doi.org/10.3233/SHTI240417
,2024, 'Preliminary Evaluation of Fine-Tuning the OpenDeLD Deidentification Pipeline Across Multi-Center Corpora', in , pp. 719 - 723, http://dx.doi.org/10.3233/SHTI240515
,2024, 'Strategies to Address Statin Medication Intolerance Among Patients at Risk of Cardiovascular Disease Identified Through Electronic Health Records: A Literature Review and Pooled Analysis', in , pp. 132 - 136, http://dx.doi.org/10.3233/SHTI240362
,2024, 'Association between Visit to Visit Blood Pressure Variability and Cardiovascular Outcome: A Meta-Analysis', in , pp. 262 - 266, http://dx.doi.org/10.3233/SHTI240149
,2018, 'Translational bioinformatics databases', in Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, pp. 1058 - 1062, http://dx.doi.org/10.1016/B978-0-12-809633-8.20303-8
,2017, 'Mining electronic health records to guide and support clinical decision support systems', in Healthcare Ethics and Training: Concepts, Methodologies, Tools, and Applications, IGI Global, pp. 184 - 201, http://dx.doi.org/10.4018/978-1-5225-2237-9.ch008
,Journal articles
2024, 'Uptake of pneumococcal vaccines in older Australian adults before and after universal public funding of PCV13', Vaccine, 42, pp. 3084 - 3090, http://dx.doi.org/10.1016/j.vaccine.2024.04.012
,2024, 'Worldwide trends in underweight and obesity from 1990 to 2022: a pooled analysis of 3663 population-representative studies with 222 million children, adolescents, and adults', The Lancet, 403, pp. 1027 - 1050, http://dx.doi.org/10.1016/S0140-6736(23)02750-2
,2024, 'A Woman With Unintended Weight Loss, Hematochezia, Abdominal Pain, and Vomiting', Gastroenterology, 166, pp. e9 - e12, http://dx.doi.org/10.1053/j.gastro.2023.08.025
,2024, 'End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study', The Lancet Digital Health, 6, pp. e33 - e43, http://dx.doi.org/10.1016/S2589-7500(23)00208-X
,2023, 'Integrated Management Systems (IMS) to Support and Sustain Quality One Health Services: International Lessons from the COVID-19 Pandemic by the IMIA Primary Care Working Group', Yearbook of Medical Informatics, 32, pp. 55 - 64, http://dx.doi.org/10.1055/s-0043-1768725
,2023, 'A Novel and Efficient Digital Pathology Classifier for Predicting Cancer Biomarkers Using Sequencer Architecture', American Journal of Pathology, 193, pp. 2122 - 2132, http://dx.doi.org/10.1016/j.ajpath.2023.09.006
,2023, 'Colorectal cancer risk stratification on histological slides based on survival curves predicted by deep learning', npj Precision Oncology, 7, http://dx.doi.org/10.1038/s41698-023-00451-3
,2023, 'Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study', Cancer Cell, 41, pp. 1650 - 1661.e4, http://dx.doi.org/10.1016/j.ccell.2023.08.002
,2023, 'Generalizability of Self-Supervised Training Models for Digital Pathology: A Multicountry Comparison in Colorectal Cancer', JCO clinical cancer informatics, 7, pp. e2200178, http://dx.doi.org/10.1200/CCI.22.00178
,2023, 'Using machine learning to predict cardiovascular risk using self-reported questionnaires: Findings from the 45 and Up Study', International Journal of Cardiology, 386, pp. 149 - 156, http://dx.doi.org/10.1016/j.ijcard.2023.05.030
,2023, 'A nationwide study of COVID-19 impact on mental health-related presentations among children and adolescents to primary care practices in Australia', Psychiatry Research, 326, http://dx.doi.org/10.1016/j.psychres.2023.115332
,2023, 'Predicting microsatellite instability and key biomarkers in colorectal cancer from H&E-stained images: achieving state-of-the-art predictive performance with fewer data using Swin Transformer', Journal of Pathology: Clinical Research, 9, pp. 223 - 235, http://dx.doi.org/10.1002/cjp2.312
,2023, 'Artificial intelligence based personalized predictive survival among colorectal cancer patients', Computer Methods and Programs in Biomedicine, 231, http://dx.doi.org/10.1016/j.cmpb.2023.107435
,2023, 'Diminishing benefits of urban living for children and adolescents’ growth and development', Nature, 615, pp. 874 - 883, http://dx.doi.org/10.1038/s41586-023-05772-8
,2023, 'Time to Embrace Natural Language Processing (NLP)-based Digital Pathology: Benchmarking NLP- and Convolutional Neural Network-based Deep Learning Pipelines', , http://dx.doi.org/10.48550/arxiv.2302.10406
,2023, 'Digital health and universal health coverage: opportunities and policy considerations for low- and middle-income Pacific Island countries and territories', Pacific Health, 6, http://dx.doi.org/10.24135/pacifichealth.v6i.64
,2023, 'Characteristics and outcomes of COVID-19 patients with and without asthma from the United States, South Korea, and Europe', Journal of Asthma, 60, pp. 76 - 86, http://dx.doi.org/10.1080/02770903.2021.2025392
,2023, 'Focused Chest Pain Assessment for Early Detection of Acute Coronary Syndrome: Development of a Cardiovascular Digital Health Intervention', Global Heart, 18, http://dx.doi.org/10.5334/gh.1194
,2023, 'OpenDeID Pipeline for Unstructured Electronic Health Record Text Notes Based on Rules and Transformers: Deidentification Algorithm Development and Validation Study', Journal of Medical Internet Research, 25, http://dx.doi.org/10.2196/48145
,2023, 'Prognostic Significance of Tumor-Infiltrating Lymphocytes Determined Using LinkNet on Colorectal Cancer Pathology Images', JCO Precision Oncology, 7, http://dx.doi.org/10.1200/PO.22.00522
,2023, 'Time to Embrace Natural Language Processing (NLP)-based Digital Pathology: Benchmarking NLP- and Convolutional Neural Network-based Deep Learning Pipelines.', CoRR, abs/2302.10406
,2022, 'Towards Equitable and Resilient Digital Primary Care Systems: An International Comparison and Insight for Moving Forward', Yearbook of Medical Informatics, 31, pp. 47 - 59, http://dx.doi.org/10.1055/s-0042-1742502
,2022, 'Seek COVER: using a disease proxy to rapidly develop and validate a personalized risk calculator for COVID-19 outcomes in an international network', BMC Medical Research Methodology, 22, http://dx.doi.org/10.1186/s12874-022-01505-z
,2022, 'Survival prediction in triple negative breast cancer using multiple instance learning of histopathological images', Scientific Reports, 12, http://dx.doi.org/10.1038/s41598-022-18647-1
,2022, 'Colorectal Cancer Survival Prediction Using Deep Distribution Based Multiple-Instance Learning', Entropy, 24, http://dx.doi.org/10.3390/e24111669
,2022, 'A Machine Learning Model to Predict Length of Stay and Mortality among Diabetes and Hypertension Inpatients', Medicina (Kaunas, Lithuania), 58, http://dx.doi.org/10.3390/medicina58111568
,2022, 'A retrospective analysis using deep-learning models for prediction of survival outcome and benefit of adjuvant chemotherapy in stage II/III colorectal cancer', Journal of Cancer Research and Clinical Oncology, 148, pp. 1955 - 1963, http://dx.doi.org/10.1007/s00432-022-03976-5
,2022, 'Statin Prescription Patterns and Associations with Subclinical Inflammation', Medicina (Lithuania), 58, pp. 1096, http://dx.doi.org/10.3390/medicina58081096
,2022, 'Analysis of Dual Combination Therapies Used in Treatment of Hypertension in a Multinational Cohort', JAMA Network Open, 5, pp. E223877, http://dx.doi.org/10.1001/jamanetworkopen.2022.3877
,2022, 'Information Flow and Data Gaps in COVID-19 Recording and Reporting at National and Provincial Levels in Indonesia', Healthcare (Switzerland), 10, http://dx.doi.org/10.3390/healthcare10020204
,2022, 'Colorectal Cancer Survival Prediction Using Deep Distribution Based Multiple-Instance Learning.', Entropy, 24, pp. 1669 - 1669
,2022, 'Predicting microsatellite instability and key biomarkers in colorectal cancer from H&E-stained images: Achieving SOTA with Less Data using Swin Transformer.', CoRR, abs/2208.10495
,2021, 'The OpenDeID corpus for patient de-identification', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-021-99554-9
,2021, 'A Retrospective Analysis using Deep-Learning Models for Prediction of Survival Outcome and Benefit of Adjuvant Chemotherapy in Stage II/III Colorectal Cancer', , http://dx.doi.org/10.48550/arxiv.2111.03532
,2021, 'Characteristics and outcomes of over 300,000 patients with COVID-19 and history of cancer in the United States and Spain', Cancer Epidemiology Biomarkers and Prevention, 30, pp. 1884 - 1894, http://dx.doi.org/10.1158/1055-9965.EPI-21-0266
,2021, 'Predicting length of stay and mortality among hospitalized patients with type 2 diabetes mellitus and hypertension', International Journal of Medical Informatics, 154, http://dx.doi.org/10.1016/j.ijmedinf.2021.104569
,2021, 'Use of repurposed and adjuvant drugs in hospital patients with covid-19: Multinational network cohort study', The BMJ, 373, http://dx.doi.org/10.1136/bmj.n1038
,2021, 'Implementation of the COVID-19 vulnerability index across an international network of health care data sets: Collaborative external validation study', JMIR Medical Informatics, 9, http://dx.doi.org/10.2196/21547
,2021, 'Quality assessment of real-world data repositories across the data life cycle: A literature review', Journal of the American Medical Informatics Association, 28, pp. 1591 - 1599, http://dx.doi.org/10.1093/jamia/ocaa340
,2021, 'Cohort selection for construction of a clinical natural language processing corpus', Computer Methods and Programs in Biomedicine Update, 1, http://dx.doi.org/10.1016/j.cmpbup.2021.100024
,2021, 'Moving with the Times: The Health Science Alliance (HSA) Biobank, Pathway to Sustainability', Biomarker Insights, 16, pp. 1 - 10, http://dx.doi.org/10.1177/11772719211005745
,2021, 'Radical collaboration during a global health emergency: Development of the RDA COVID-19 data sharing recommendations and guidelines', Open Research Europe, 1, http://dx.doi.org/10.12688/openreseurope.13369.1
,2021, 'Characterization of long-term patient-reported symptoms of COVID-19: an analysis of social media data', , http://dx.doi.org/10.1101/2021.07.13.21260449
,2021, 'Characterizing Dual Combination Therapy Use in Treatment Escalation of Hypertension: Real-World Evidence from Multinational Cohorts', , http://dx.doi.org/10.1101/2021.06.28.21258167
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