Select Publications

Book Chapters

Terasaki O; Ohsuna T; Liu Z; Sakamot Y; Ruan J; Che S, 2007, 'Chapter 14 Structural study of porous materials by electron microscopy', in Introduction to Zeolite Science and Practice, Elsevier, pp. 477 - xiii, http://dx.doi.org/10.1016/s0167-2991(07)80802-0

Terasaki O; Ohsuna T; Liu Z; Sakamoto Y; Ruan J; Che S, 2007, 'Structural Study of Porous Materials by Electron Microscopy', in Studies in Surface Science and Catalysis, Elsevier, pp. 477 - XIII, http://dx.doi.org/10.1016/s0167-2991(07)80802-0

Journal articles

Dickson CF; Hertel S; Tuckwell AJ; Li N; Ruan J; Al-Izzi SC; Ariotti N; Sierecki E; Gambin Y; Morris RG; Towers GJ; Böcking T; Jacques DA, 2024, 'The HIV capsid mimics karyopherin engagement of FG-nucleoporins', Nature, 626, pp. 836 - 842, http://dx.doi.org/10.1038/s41586-023-06969-7

Nguyen AK; Molley TG; Kardia E; Ganda S; Chakraborty S; Wong SL; Ruan J; Yee BE; Mata J; Vijayan A; Kumar N; Tilley RD; Waters SA; Kilian KA, 2023, 'Hierarchical assembly of tryptophan zipper peptides into stress-relaxing bioactive hydrogels', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-41907-1

Kuschnerus IC; Wen H; Zeng X; Khine YY; Ruan J; Su CJ; Jeng US; Girard HA; Arnault JC; Ōsawa E; Shenderova O; Mochalin VN; Liu M; Nishikawa M; Chang SLY, 2023, 'Fabrication process independent and robust aggregation of detonation nanodiamonds in aqueous media', Diamond and Related Materials, 139, http://dx.doi.org/10.1016/j.diamond.2023.110199

Ruan J; Dickson CF; Hertel S; Ariotti N; Jacques DA, 2023, 'The interaction between the HIV capsid and nuclear pore complexes revealed by cryo-electron tomography', Acta Crystallographica Section A Foundations and Advances, 79, pp. C725 - C725, http://dx.doi.org/10.1107/s2053273323088927

Kuschnerus IC; Wen H; Ruan J; Zeng X; Su CJ; Jeng US; Opletal G; Barnard AS; Liu M; Nishikawa M; Chang SLY, 2023, 'Complex Dispersion of Detonation Nanodiamond Revealed by Machine Learning Assisted Cryo-TEM and Coarse-Grained Molecular Dynamics Simulations', ACS Nanoscience Au, 3, pp. 211 - 221, http://dx.doi.org/10.1021/acsnanoscienceau.2c00055

Liang J; Ruan J; Njegic B; Rawal A; Scott J; Xu J; Boyer C; Liang K, 2023, 'Insight into Bioactivity of In-situ Trapped Enzyme-Covalent-Organic Frameworks', Angewandte Chemie - International Edition, 62, pp. e202303001, http://dx.doi.org/10.1002/anie.202303001

Liang J; Ruan J; Njegic B; Rawal A; Scott J; Xu J; Boyer C; Liang K, 2023, 'Insight into Bioactivity of In‐situ Trapped Enzyme‐Covalent‐Organic Frameworks', Angewandte Chemie, 135, http://dx.doi.org/10.1002/ange.202303001

Huang G; Liu Y; Wang D; Zhu Y; Wen S; Ruan J; Jin D, 2022, 'Upconversion nanoparticles for super-resolution quantification of single small extracellular vesicles', eLight, 2, http://dx.doi.org/10.1186/s43593-022-00031-1

Kuschnerus I; Giri K; Ruan J; Huang Y; Bedford N; Garcia-Bennett A, 2022, 'On the growth of the soft and hard protein corona of mesoporous silica particles with varying morphology', Journal of Colloid and Interface Science, 612, pp. 467 - 478, http://dx.doi.org/10.1016/j.jcis.2021.12.161

Khatib I; Chow MYT; Ruan J; Cipolla D; Chan HK, 2021, 'Modeling of a spray drying method to produce ciprofloxacin nanocrystals inside the liposomes utilizing a response surface methodology: Box-Behnken experimental design', International Journal of Pharmaceutics, 597, http://dx.doi.org/10.1016/j.ijpharm.2021.120277

Wright BW; Ruan J; Molloy MP; Jaschke PR, 2020, 'Genome modularization reveals overlapped gene topology is necessary for efficient viral reproduction', ACS Synthetic Biology, 9, pp. 3079 - 3090, http://dx.doi.org/10.1021/acssynbio.0c00323

Khanal D; Khatib I; Ruan J; Cipolla D; Dayton F; Blanchard JD; Chan HK; Chrzanowski W, 2020, 'Nanoscale Probing of Liposome Encapsulating Drug Nanocrystal Using Atomic Force Microscopy-Infrared Spectroscopy', Analytical Chemistry, 92, pp. 9922 - 9931, http://dx.doi.org/10.1021/acs.analchem.0c01465

Giri K; Kuschnerus I; Ruan J; Garcia-Bennett AE, 2020, 'Influence of a Protein Corona on the Oral Pharmacokinetics of Testosterone Released from Mesoporous Silica', Advanced Therapeutics, 3, http://dx.doi.org/10.1002/adtp.201900110

Khatib I; Tang P; Ruan J; Cipolla D; Dayton F; Blanchard JD; Chan HK, 2020, 'Formation of ciprofloxacin nanocrystals within liposomes by spray drying for controlled release via inhalation', International Journal of Pharmaceutics, 578, http://dx.doi.org/10.1016/j.ijpharm.2020.119045

Kuschnerus I; Lau M; Giri K; Bedford N; Biazik J; Ruan J; Garcia-Bennett A, 2020, 'Effect of a protein corona on the fibrinogen induced cellular oxidative stress of gold nanoparticles', Nanoscale, 12, pp. 5898 - 5905, http://dx.doi.org/10.1039/d0nr00371a

Zhang Q; Mayoral A; Li J; Ruan J; Alfredsson V; Ma Y; Yu J; Terasaki O, 2020, 'Electron Microscopy Studies of Local Structural Modulations in Zeolite Crystals', Angewandte Chemie, http://dx.doi.org/10.1002/ange.202007490

Giri K; Kuschnerus I; Lau M; Ruan J; Garcia-Bennett A, 2020, 'Pore structure and particle shape modulates the protein corona of mesoporous silica particles', Materials Advances, 1, pp. 599 - 603, http://dx.doi.org/10.1039/d0ma00188k

Pang B; Zhu Y; Ni J; Ruan J; Thompson J; Malouf D; Bucci J; Graham P; Li Y, 2020, 'Quality assessment and comparison of plasma-derived extracellular vesicles separated by three commercial kits for prostate cancer diagnosis', International Journal of Nanomedicine, 15, pp. 10241 - 10256, http://dx.doi.org/10.2147/IJN.S283106

Wright B; Ruan J; Molloy M; Jaschke P, 2020, 'Genome modularization reveals overlapped gene topology is necessary for efficient viral reproduction', , http://dx.doi.org/10.1101/2020.06.10.143693

Berengut JF; Berengut JC; Doye JPK; Prešern D; Kawamoto A; Ruan J; Wainwright MJ; Lee LK, 2019, 'Design and synthesis of pleated DNA origami nanotubes with adjustable diameters', Nucleic Acids Research, 47, pp. 11963 - 11975, http://dx.doi.org/10.1093/nar/gkz1056

Khatib I; Khanal D; Ruan J; Cipolla D; Dayton F; Blanchard JD; Chan HK, 2019, 'Ciprofloxacin nanocrystals liposomal powders for controlled drug release via inhalation', International Journal of Pharmaceutics, 566, pp. 641 - 651, http://dx.doi.org/10.1016/j.ijpharm.2019.05.068

Zhang S-D; Petersen N; Zhang W-J; Cargou S; Ruan J; Murat D; Santini C-L; Song T; Kato T; Notareschi P; Li Y; Namba K; Gue A-M; Wu L-F, 2014, 'Swimming behaviour and magnetotaxis function of the marine bacterium strain MO-1', ENVIRONMENTAL MICROBIOLOGY REPORTS, 6, pp. 14 - 20, http://dx.doi.org/10.1111/1758-2229.12102

KATO T; RUAN J, 2014, 'Rotational Mechanism of Hexagonal Seven Flagella Motor at Magnetotactic Bacteria', Seibutsu Butsuri, 54, pp. 024 - 025, http://dx.doi.org/10.2142/biophys.54.024

Ruan J; Kato T; Santini C-L; Wu L-F; Namba K, 2013, '2P157 Structural study of the sheath in the magnetotactic bacterium MO-1 by electron cryomicroscopy(11. Molecular motor,Poster)', Seibutsu Butsuri, 53, pp. S185 - S185, http://dx.doi.org/10.2142/biophys.53.s185_1

Ruan J; Kato T; Santini C-L; Miyata T; Kawamoto A; Zhang W-J; Bernadac A; Wu L-F; Namba K, 2012, 'Architecture of a flagellar apparatus in the fast-swimming magnetotactic bacterium MO-1', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109, pp. 20643 - 20648, http://dx.doi.org/10.1073/pnas.1215274109

Ruan J; Kjellman T; Sakamoto Y; Alfredsson V, 2012, 'Transient Colloidal Stability Controls the Particle Formation of SBA-15', LANGMUIR, 28, pp. 11567 - 11574, http://dx.doi.org/10.1021/la3013969

Zhang W-J; Santini C-L; Bernadac A; Ruan J; Zhang S-D; Kato T; Li Y; Namba K; Wu L-F, 2012, 'Complex Spatial Organization and Flagellin Composition of Flagellar Propeller from Marine Magnetotactic Ovoid Strain MO-1', JOURNAL OF MOLECULAR BIOLOGY, 416, pp. 558 - 570, http://dx.doi.org/10.1016/j.jmb.2011.12.065

Zones SI; Ruan J; Elomari S; Terasaki O; Chen CY; Corma A, 2011, 'Studies on zeolite SSZ-57: A structural enigma', SOLID STATE SCIENCES, 13, pp. 706 - 713, http://dx.doi.org/10.1016/j.solidstatesciences.2010.08.004

Ruan J; Kato T; Zhang W-J; Wu L-F; Namba K, 2011, '3M1522 Study of the unique flagellar apparatus of magnetotactic bacteria MO-1 by Electron cryotomography(Molecular motor5,The 49th Annual Meeting of the Biophysical Society of Japan)', Seibutsu Butsuri, 51, pp. S154 - S154, http://dx.doi.org/10.2142/biophys.51.s154_1

Lelis M; Milcius D; Wirth E; Halenius U; Eriksson L; Jansson K; Kadir K; Ruan J; Sato T; Yokosawa T; Noreus D, 2010, 'A mechanically switchable metal-insulator transition in Mg2NiH4 discovers a strain sensitive, nanoscale modulated resistivity connected to a stacking fault', JOURNAL OF ALLOYS AND COMPOUNDS, 496, pp. 81 - 86, http://dx.doi.org/10.1016/j.jallcom.2010.02.135

Ruan J; Kato T; Zhang W-J; Wu L-F; Namba K, 2010, '3P147 Structural study of the flagellar bundle of magnetotactic bacterium MO-1 by electron cryotomography(Molecular motor,The 48th Annual Meeting of the Biophysical Society of Japan)', Seibutsu Butsuri, 50, pp. S170 - S171, http://dx.doi.org/10.2142/biophys.50.s170_6

Sakamoto S; Shimojima A; Miyasaka K; Ruan J; Terasaki O; Kuroda K, 2009, 'Formation of Two- and Three-Dimensional Hybrid Mesostructures from Branched Siloxane Molecules', JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 131, pp. 9634 - 9635, http://dx.doi.org/10.1021/ja903176k

Ruan J; Wu P; Slater B; Zhao Z; Wu L; Terasaki O, 2009, 'Structural Characterization of Interlayer Expanded Zeolite Prepared From Ferrierite Lamellar Precursor', CHEMISTRY OF MATERIALS, 21, pp. 2904 - 2911, http://dx.doi.org/10.1021/cm900645c

Shu P; Ruan J; Gao C; Li H; Che S, 2009, 'Formation of mesoporous Co3O4 replicas of different mesostructures with different pore sizes', MICROPOROUS AND MESOPOROUS MATERIALS, 123, pp. 314 - 323, http://dx.doi.org/10.1016/j.micromeso.2009.04.017

Gao C; Izquierdo-Barba I; Nakase I; Futaki S; Ruan J; Sakamoto K; Sakamoto Y; Kuroda K; Terasaki O; Che S, 2009, 'Mesostructured silica based delivery system for a drug with a peptide as a cell-penetrating vector', MICROPOROUS AND MESOPOROUS MATERIALS, 122, pp. 201 - 207, http://dx.doi.org/10.1016/j.micromeso.2009.03.002

Fan C; Qiu H; Ruan J; Terasaki O; Yan Y; Wei Z; Che S, 2008, 'Formation of Chiral Mesopores in Conducting Polymers by Chiral-Lipid-Ribbon Templating and "Seeding" Route', ADVANCED FUNCTIONAL MATERIALS, 18, pp. 2699 - 2707, http://dx.doi.org/10.1002/adfm.200701456

Wu P; Ruan J; Wang L; Wu L; Wang Y; Liu Y; Fan W; He M; Terasaki O; Tatsumi T, 2008, 'Methodology for synthesizing crystalline metallosilicates with expanded pore windows through molecular alkoxysilylation of zeolitic lamellar precursors', JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 130, pp. 8178 - 8187, http://dx.doi.org/10.1021/ja0758739

Han L; Ruan J; Li Y; Terasaki O; Che S, 2007, 'Synthesis and characterization of the amphoteric amino acid bifunctional mesoporous silica', CHEMISTRY OF MATERIALS, 19, pp. 2860 - 2867, http://dx.doi.org/10.1021/cm0705845

Wu X; Ruan J; Ohsuna T; Terasaki O; Che S, 2007, 'A novel route for synthesizing silica nanotubes with chiral mesoporous wall structures', CHEMISTRY OF MATERIALS, 19, pp. 1577 - 1583, http://dx.doi.org/10.1021/cm062368m

Ruan J; Wu P; Slater B; Terasaki O, 2005, 'Structure Elucidation of the Highly Active Titanosilicate Catalyst Ti‐YNU‐1', Angewandte Chemie, 117, pp. 6877 - 6881, http://dx.doi.org/10.1002/ange.200501939

Ruan JF; Wu P; Slater B; Terasaki O, 2005, 'Structure elucidation of the highly active titanosilicate catalyst Ti-YNU-1', ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 44, pp. 6719 - 6723, http://dx.doi.org/10.1002/anie.200501939

Wu P; Nuntasri D; Ruan JF; Liu YM; He MY; Fan WB; Terasaki O; Tatsumi T, 2004, 'Delamination of Ti-MWW and high efficiency in epoxidation of alkenes with various molecular sizes', JOURNAL OF PHYSICAL CHEMISTRY B, 108, pp. 19126 - 19131, http://dx.doi.org/10.1021/jp037459a

Ruan JF; Kuo KH; Guo JQ; Tsai AP, 2004, 'Crystalline phases displaying pseudo-icosahedral symmetry in Ag42In42RE16 (RE = Gd, Tb, Dy, Ho, Er, Tm, Yb, and Lu)', JOURNAL OF ALLOYS AND COMPOUNDS, 370, pp. L23 - L27, http://dx.doi.org/10.1016/j.jallcom.2003.09.111

Preprints

Chen K-E; Tillu VA; Gopaldass N; Chowdhury SR; Leneva N; Kovtun O; Ruan J; Guo Q; Ariotti N; Mayer A; Collins BM, 2024, Molecular basis for the assembly of the Vps5-Vps17 SNX-BAR proteins with Retromer, , http://dx.doi.org/10.1101/2024.03.24.586500

Dickson CF; Hertel S; Ruan J; Ariotti N; Tuckwell A; Li N; Al-Izzi SC; Sierecki E; Gambin Y; Morris RG; Towers GJ; Böcking T; Jacques DA, 2023, Karyopherin mimicry explains how the HIV capsid penetrates nuclear pores, , http://dx.doi.org/10.1101/2023.03.23.534032

Redpath GMI; Rae J; Yao Y; Ruan J; Cagigas ML; Whan R; Hardeman EC; Gunning PW; Ananthanarayanan V; Parton RG; Ariotti NA, 2022, Precision super-resolution cryo-correlative light and electron microscopy for rapidin situstructural analyses of optogenetically-positioned organelles, , http://dx.doi.org/10.1101/2022.11.22.516823

Berengut JF; Ruan J; Kawamoto A; Lee LK, 2019, Design and Synthesis of Pleated DNA Origami Nanotubes with Adjustable Diameters, , http://dx.doi.org/10.1101/534792

Kuschnerus IC; Wen H; Khine YY; Ruan J; Su C-J; Jeng U-S; Opletal G; Barnard A; Osawa E; Shenderova O; Mochalin V; Liu M; Nishikawa M; Chang SLY, Fabrication Process Independent and Robust Aggregation Formation of Detonation Nanodiamonds in Aqueous Media, , http://dx.doi.org/10.2139/ssrn.4049511


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