By Dr Ki Wook Kim

Book Chapters

Kim KW; Eamens AL; Waterhouse PM, 2011, 'RNA Processing Activities of the Arabidopsis Argonaute Protein Family', in Grabowski P (ed.), RNA Processing, InTech Open, http://dx.doi.org/10.5772/22686

Journal articles

Umashankar B; Eliasson L; Ooi CY; Kim KW; Shaw JAM; Waters SA, 2024, 'Beyond insulin: Unraveling the complex interplay of ER stress, oxidative damage, and CFTR modulation in CFRD', Journal of Cystic Fibrosis, 23, pp. 842 - 852, http://dx.doi.org/10.1016/j.jcf.2024.06.004

Wang X; Walker G; Kim KW; Stelzer-Braid S; Scotch M; Rawlinson WD, 2024, 'The resurgence of influenza A/H3N2 virus in Australia after the relaxation of COVID-19 restrictions during the 2022 season', Journal of Medical Virology, 96, http://dx.doi.org/10.1002/jmv.29922

Marinelli T; Masters J; Buckland ME; Lee M; Rawlinson W; Kim KW; Urriola N; Van Hal S, 2024, 'Chronic and Neurotropic: A Paradigm-Challenging Case of Dengue Virus Encephalitis in a Patient with Advanced HIV Infection', Clinical Infectious Diseases, 79, pp. 498 - 501, http://dx.doi.org/10.1093/cid/ciae061

Hurley S; Kim KW; Domazetovska A; Yau C; Yeang M; Donovan L; Kok J; Rawlinson W, 2024, 'Mpox detection in clinical specimens by three commercial real-time PCR assays demonstrates comparable results', Pathology, 56, pp. 736 - 740, http://dx.doi.org/10.1016/j.pathol.2023.11.010

Thomson RL; Oakey H; Haynes A; Craig ME; Harrison LC; Wentworth JM; Anderson A; Ashwood P; Barry S; Brittain B; Brown JD; Colman PG; Davis EA; Hamilton-Williams E; Huynh D; Huynh T; Kim KW; McGorm KJ; Morahan G; Rawlinson W; Sinnott RO; Soldatos G; Tye-Din JA; Vuillermin PJ; Penno MAS; Couper JJ, 2024, 'Environmental Determinants of Islet Autoimmunity (ENDIA) longitudinal prospective pregnancy to childhood cohort study of Australian children at risk of type 1 diabetes: parental demographics and birth information', BMJ Open Diabetes Research and Care, 12, http://dx.doi.org/10.1136/bmjdrc-2024-004130

Walker GJ; Foster CSP; Sevendal A; Domazetovska A; Kamalakkannan A; Williams PCM; Kim KW; Condylios A; Stelzer-Braid S; Bartlett AW; Rawlinson W, 2024, 'Clinical, Genomic, and Immunological Characterization of RSV Surge in Sydney, Australia, 2022', Pediatrics, 153, http://dx.doi.org/10.1542/peds.2023-063667

Wang X; Kim KW; Walker G; Stelzer-Braid S; Scotch M; Rawlinson WD, 2024, 'Genome characterization of influenza A and B viruses in New South Wales, Australia, in 2019: A retrospective study using high-throughput whole genome sequencing', Influenza and other Respiratory Viruses, 18, http://dx.doi.org/10.1111/irv.13252

Harrison LC; Bandala-Sanchez E; Oakey H; Colman PG; Watson K; Kim KW; Wu R; Hamilton-Williams EE; Stone NL; Haynes A; Thomson RL; Vuillermin PJ; Soldatos G; Rawlinson WD; McGorm KJ; Morahan G; Barry SC; Sinnott RO; Wentworth JM; Couper JJ; Penno MAS, 2023, 'A surge in serum mucosal cytokines associated with seroconversion in children at risk for type 1 diabetes', Journal of Diabetes Investigation, 14, pp. 1092 - 1100, http://dx.doi.org/10.1111/jdi.14031

Isaacs SR; Roy A; Dance B; Ward EJ; Foskett DB; Maxwell AJ; Rawlinson WD; Kim KW; Craig ME, 2023, 'Enteroviruses and risk of islet autoimmunity or type 1 diabetes: systematic review and meta-analysis of controlled observational studies detecting viral nucleic acids and proteins', The Lancet Diabetes and Endocrinology, 11, pp. 578 - 592, http://dx.doi.org/10.1016/S2213-8587(23)00122-5

Speck P; MacKenzie J; Bull RA; Slobedman B; Drummer H; Fraser J; Herrero L; Helbig K; Londrigan S; Moseley G; Prow N; Hansman G; Edwards R; Ahlenstiel C; Abendroth A; Tscharke D; Hobson-Peter J; Kriiger-Loteri R; Parry R; Marsh G; Harding E; Jacques DA; Gartner MJ; Lee WS; McAuley J; Vaz P; Sainsbury F; Tate MD; Sinclair J; Imrie A; Rawlinson S; Harman A; Carr JM; Monson EA; Hibma M; Mahony TJ; Tu T; Center RJ; Shrestha LB; Hall R; Warner M; Ward V; Anderson DE; Eyre NS; Netzler NE; Peel AJ; Revill P; Beard M; Legione AR; Spencer AJ; Idris A; Forwood J; Sarker S; Purcell DFJ; Bartlett N; Deerain JM; Brew BJ; Asgari S; Farrell H; Khromykh A; Tuipulotu DE; Anderson D; Mese S; Tayyar Y; Edenborough K; Uddin JM; Hussain A; Daymond CJI; Agius J; Johnson KN; Shirmast P; Abedinzadeshahri M; MacDiarmid R; Ashley CL; Laws J; Furfaro LL; Burton TD; Johnson SMR; Telikani Z; Petrone M; Roby JA; Samer C; Suhrbier A; Van Der Kamp A; Cunningham A; Donato C; Mahar J; Black WD; Vasudevan S; Lenchine R; Spann K; Rawle DJ; Rudd P; Neil J; Kingston R; Newsome TP; Kim KW; Mak J; Lowry K; Bryant N, 2023, 'Statement in Support of: "Virology under the Microscope - a Call for Rational Discourse"', mSphere, 8, http://dx.doi.org/10.1128/msphere.00165-23

Speck P; Mackenzie J; Bull RA; Slobedman B; Drummer H; Fraser J; Herrero L; Helbig K; Londrigan S; Moseley G; Prow N; Hansman G; Edwards R; Ahlenstiel C; Abendroth A; Tscharke D; Hobson-Peters J; Kriiger-Loterio R; Parry R; Marsh G; Harding E; Jacques DA; Gartner MJ; Lee WS; McAuley J; Vaz P; Sainsbury F; Tate MD; Sinclair J; Imrie A; Rawlinson S; Harman A; Carr JM; Monson EA; Hibma M; Mahony TJ; Tu T; Center RJ; Shrestha LB; Hall R; Warner M; Ward V; Anderson DE; Eyre NS; Netzler NE; Peel AJ; Revill P; Beard M; Legione AR; Spencer AJ; Idris A; Forwood J; Sarker S; Purcell DFJ; Bartlett N; Deerain JM; Brew BJ; Asgari S; Farrell H; Khromykh A; Tuipulotu DE; Anderson D; Mese S; Tayyar Y; Edenborough K; Uddin JM; Hussain A; Daymond CJI; Agius J; Johnson KN; Shirmast P; Abedinzadeshahri M; MacDiarmid R; Ashley CL; Laws J; Furfaro LL; Burton TD; Johnson SMR; Telikani Z; Petrone M; Roby JA; Samer C; Suhrbier A; Van Der Kamp A; Cunningham A; Donato C; Mahar J; Black WD; Vasudevan S; Lenchine R; Spann K; Rawle DJ; Rudd P; Neil J; Kingston R; Newsome TP; Kim KW; Mak J; Lowry K; Bryant N, 2023, 'Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”', mBio, 14, http://dx.doi.org/10.1128/mbio.00815-23

Sprague BN; Zhu X; Rosso AL; Verghese J; Delbaere K; Lipnicki DM; Sachdev PS; Ng TP; Gwee X; Yap KB; Kim K-W; Han JW; Oh DJ; Narazaki K; Chen T; Chen S; Brodaty H; Numbers K; Kochan NA; Walker RW; Paddick S-M; Gureje O; Ojagbemi A; Bello T; Rosano C, 2023, 'Correlates of gait speed among older adults from six countries: Findings from the COSMIC collaboration.', The Journals of Gerontology Series A, 78, pp. 2396 - 2406, http://dx.doi.org/10.1093/gerona/glad090

Wu R; Mumtaz M; Maxwell AJ; Isaacs SR; Laiho JE; Rawlinson WD; Hyöty H; Craig ME; Kim KW, 2023, 'Respiratory infections and type 1 diabetes: Potential roles in pathogenesis', Reviews in Medical Virology, 33, http://dx.doi.org/10.1002/rmv.2429

Foster CSP; Bull RA; Tedla N; Santiago F; Agapiou D; Adhikari A; Walker GJ; Shrestha LB; Van Hal SJ; Kim KW; Rawlinson WD, 2023, 'Persistence of a Frameshifting Deletion in SARS-CoV-2 ORF7a for the Duration of a Major Outbreak', Viruses, 15, http://dx.doi.org/10.3390/v15020522

Hurley S; Eden JS; Bingham J; Rodriguez M; Neave MJ; Johnson A; Howard-Jones AR; Kok J; Anazodo A; McMullan B; Williams DT; Watson J; Solinas A; Kim KW; Rawlinson W, 2023, 'Fatal Human Neurologic Infection Caused by Pigeon Avian Paramyxovirus-1, Australia', Emerging Infectious Diseases, 29, pp. 2482 - 2487, http://dx.doi.org/10.3201/eid2912.230250

Oakey H; Giles LC; Thomson RL; Lê Cao KA; Ashwood P; Brown JD; Knight EJ; Barry SC; Craig ME; Colman PG; Davis EA; Hamilton-Williams EE; Harrison LC; Haynes A; Kim KW; Mallitt KA; McGorm K; Morahan G; Rawlinson WD; Sinnott RO; Soldatos G; Wentworth JM; Couper JJ; Penno MAS, 2023, 'Protocol for a nested case-control study design for omics investigations in the Environmental Determinants of Islet Autoimmunity cohort', Annals of Medicine, 55, http://dx.doi.org/10.1080/07853890.2023.2198255

Speck P; Mackenzie J; Bull RA; Slobedman B; Drummer H; Fraser J; Herrero L; Helbig K; Londrigan S; Moseley G; Prow N; Hansman G; Edwards R; Ahlenstiel C; Abendroth A; Tscharke D; Hobson-Peters J; Kriiger-Loterio R; Parry R; Marsh G; Harding E; Jacques DA; Gartner MJ; Lee WS; McAuley J; Vaz P; Sainsbury F; Tate MD; Sinclair J; Imrie A; Rawlinson S; Harman A; Carr JM; Monson EA; Hibma M; Mahony TJ; Tu T; Center RJ; Shrestha LB; Hall R; Warner M; Ward V; Anderson DE; Eyre NS; Netzler NE; Peel AJ; Revill P; Beard M; Legione AR; Spencer AJ; Idris A; Forwood J; Sarker S; Purcell DFJ; Bartlett N; Deerain JM; Brew BJ; Asgari S; Farrell H; Khromykh A; Tuipulotu DE; Anderson D; Mese S; Tayyar Y; Edenborough K; Uddin JM; Hussain A; Daymond CJI; Agius J; Johnson KN; Shirmast P; Abedinzadeshahri M; MacDiarmid R; Ashley CL; Laws J; Furfaro LL; Burton TD; Johnson SMR; Telikani Z; Petrone M; Roby JA; Samer C; Suhrbier A; Van Der Kamp A; Cunningham A; Donato C; Mahar J; Black WD; Vasudevan S; Lenchine R; Spann K; Rawle DJ; Rudd P; Neil J; Kingston R; Newsome TP; Kim KW; Mak J; Lowry K; Bryant N, 2023, 'Statement in Support of: “Virology under the Microscope-a Call for Rational Discourse”', Journal of Virology, 97, http://dx.doi.org/10.1128/jvi.00451-23

Gavin PG; Kim KW; Craig ME; Hill MM; Hamilton-Williams EE, 2022, 'Multi-omic interactions in the gut of children at the onset of islet autoimmunity', Microbiome, 10, http://dx.doi.org/10.1186/s40168-022-01425-6

Stelzer-Braid S; Yeang M; Britton PN; Kim KW; Varadhan H; Andrews PI; Briest R; Branley J; Balgahom R; Burrell R; Gehrig N; Newcombe J; Kesson A; Kok J; Maley M; Van Hal S; MacIntyre CR; Craig ME; Ferson MJ; Rawlinson WD, 2022, 'Circulation of enterovirus D68 (EV-D68) causing respiratory illness in New South Wales, Australia, between August 2018 and November 2019', Pathology, 54, pp. 784 - 789, http://dx.doi.org/10.1016/j.pathol.2022.03.007

Kim KW; Wang X; Adhikari A; Yeang M; Jenkins F; Naing Z; Walker GJ; Foster CSP; Stelzer-Braid S; Deveson I; Craig ME; Tedla N; Bull RA; Martinello M; Pinto AN; Chan R; Turville S; Rawlinson WD; van Hal S, 2022, 'Persistent high-level shedding of cultivable SARS-CoV-2 Delta virus 33 days after onset of COVID-19 in a hospitalized patient with pneumonia', Journal of Medical Virology, 94, pp. 4043 - 4046, http://dx.doi.org/10.1002/jmv.27832

Hall M; Oakey H; Penno MAS; McGorm K; Anderson AJ; Ashwood P; Colman PG; Craig ME; Davis EA; Harris M; Harrison LC; Haynes A; Morbey C; Sinnott RO; Soldatos G; Vuillermin PJ; Wentworth JM; Thomson RL; Couper JJ, 2022, 'Mental Health During Late Pregnancy and Postpartum in Mothers With and Without Type 1 Diabetes: The ENDIA Study', Diabetes Care, 45, pp. 1082 - 1090, http://dx.doi.org/10.2337/dc21-2335

Foster CSP; Stelzer-Braid S; Deveson IW; Bull RA; Yeang M; Au JP; Ruiz Silva M; van Hal SJ; Rockett RJ; Sintchenko V; Kim KW; Rawlinson WD, 2022, 'Assessment of Inter-Laboratory Differences in SARS-CoV-2 Consensus Genome Assemblies between Public Health Laboratories in Australia', Viruses, 14, http://dx.doi.org/10.3390/v14020185

Kim KW; Deveson IW; Pang CNI; Yeang M; Naing Z; Adikari T; Hammond JM; Stevanovski I; Beukers AG; Verich A; Yin S; McFarlane D; Wilkins MR; Stelzer-Braid S; Bull RA; Craig ME; van Hal SJ; Rawlinson WD, 2021, 'Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing', Scientific Reports, 11, pp. 3934, http://dx.doi.org/10.1038/s41598-021-83642-x

Hope CM; Huynh D; Wong YY; Oakey H; Perkins GB; Nguyen T; Binkowski S; Bui M; Choo AYL; Gibson E; Huang D; Kim KW; Ngui K; Rawlinson WD; Sadlon T; Couper JJ; Penno MAS; Barry SC, 2021, 'Optimization of blood handling and peripheral blood mononuclear cell cryopreservation of low cell number samples', International Journal of Molecular Sciences, 22, http://dx.doi.org/10.3390/ijms22179129

Faulkner CL; Luo YX; Isaacs S; Rawlinson WD; Craig ME; Kim KW, 2021, 'The virome in early life and childhood and development of islet autoimmunity and type 1 diabetes: A systematic review and meta-analysis of observational studies', Reviews in Medical Virology, 31, pp. 1 - 14, http://dx.doi.org/10.1002/rmv.2209

Isaacs SR; Foskett DB; Maxwell AJ; Ward EJ; Faulkner CL; Luo JYX; Rawlinson WD; Craig ME; Kim KW, 2021, 'Viruses and type 1 diabetes: From enteroviruses to the virome', Microorganisms, 9, http://dx.doi.org/10.3390/microorganisms9071519

Foster CSP; Stelzer-Braid S; Deveson I; Bull R; Yeang M; Phan-Au J; Silva MR; van Hal S; Rockett R; Sintchenko V; Kim KW; Rawlinson W, 2021, 'Assessment of inter-laboratory differences in SARS-CoV-2 consensus genome assemblies between public health laboratories in Australia', , http://dx.doi.org/10.1101/2021.08.19.21262296

Isaacs S; Foskett D; Maxwell A; Ward E; Faulkner C; Luo J; Rawlinson W; Craig M; Kim KW, 2021, 'Viruses and Type 1 Diabetes: From Enteroviruses to the Virome', , http://dx.doi.org/10.20944/preprints202106.0574.v1

Bull RA; Adikari TN; Ferguson JM; Hammond JM; Stevanovski I; Beukers AG; Naing Z; Yeang M; Verich A; Gamaarachchi H; Kim KW; Luciani F; Stelzer-Braid S; Eden JS; Rawlinson WD; van Hal SJ; Deveson IW, 2020, 'Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis', Nature Communications, 11, http://dx.doi.org/10.1038/s41467-020-20075-6

Kim KW; Allen DW; Briese T; Couper JJ; Barry SC; Colman PG; Cotterill AM; Davis EA; Giles LC; Harrison LC; Harris M; Haynes A; Horton JL; Isaacs SR; Jain K; Lipkin WI; McGorm K; Morahan G; Morbey C; Pang ICN; Papenfuss AT; Penno MAS; Sinnott RO; Soldatos G; Thomson RL; Vuillermin P; Wentworth JM; Wilkins MR; Rawlinson WD; Craig ME, 2020, 'Higher frequency of vertebrate-infecting viruses in the gut of infants born to mothers with type 1 diabetes', Pediatric Diabetes, 21, pp. 271 - 279, http://dx.doi.org/10.1111/pedi.12952

Kim KW; Deveson I; Pang CN; Yeang M; Naing Z; Adikari T; Hammond J; Stevanovski I; Beukers A; Verich A; Yin S; McFarlane D; Wilkins M; Stelzer-Braid S; Bull R; Craig M; Hal SV; Rawlinson W, 2020, 'Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing', , http://dx.doi.org/10.21203/rs.3.rs-105996/v1

Kim KW; Horton JL; Pang CNI; Jain K; Leung P; Isaacs SR; Bull RA; Luciani F; Wilkins MR; Catteau J; Lipkin WI; Rawlinson WD; Briese T; Craig ME, 2019, 'Higher abundance of enterovirus A species in the gut of children with islet autoimmunity', Scientific Reports, 9, pp. 1749, http://dx.doi.org/10.1038/s41598-018-38368-8

Craig ME; Kim KW; Isaacs SR; Penno MA; Hamilton-Williams EE; Couper JJ; Rawlinson WD, 2019, 'Early-life factors contributing to type 1 diabetes', Diabetologia, 62, pp. 1823 - 1834, http://dx.doi.org/10.1007/s00125-019-4942-x

Kim KW; Allen DW; Briese T; Couper JJ; Barry SC; Colman PG; Cotterill AM; Davis EA; Giles LC; Harrison LC; Harris M; Haynes A; Horton JL; Isaacs SR; Jain K; Lipkin WI; Morahan G; Morbey C; Pang ICN; Papenfuss AT; Penno MAS; Sinnott RO; Soldatos G; Thomson RL; Vuillermin PJ; Wentworth JM; Wilkins MR; Rawlinson WD; Craig ME, 2019, 'Distinct gut virome profile of pregnant women with type 1 diabetes in the ENDIA study', Open Forum Infectious Diseases, 6, http://dx.doi.org/10.1093/ofid/ofz025

Isaacs SR; Kim KW; Cheng JX; Bull RA; Stelzer-Braid S; Luciani F; Rawlinson WD; Craig ME, 2018, 'Amplification and next generation sequencing of near full-length human enteroviruses for identification and characterisation from clinical samples', Scientific Reports, 8, pp. 11889, http://dx.doi.org/10.1038/s41598-018-30322-y

Allen DW; Kim KW; Rawlinson WD; Craig ME, 2018, 'Maternal virus infections in pregnancy and type 1 diabetes in their offspring: Systematic review and meta-analysis of observational studies', Reviews in Medical Virology, 28, http://dx.doi.org/10.1002/rmv.1974

Isaacs SR; Wang J; Kim KW; Yin C; Zhou L; Mi QS; Craig ME, 2016, 'MicroRNAs in Type 1 Diabetes: Complex Interregulation of the Immune System, β Cell Function and Viral Infections', Current Diabetes Reports, 16, http://dx.doi.org/10.1007/s11892-016-0819-2

Kim KW; Ho A; Alshabee-Akil A; Hardikar AA; Kay TWH; Rawlinson WD; Craig ME, 2016, 'Coxsackievirus B5 infection induces dysregulation of microRNAs predicted to target known type 1 diabetes risk genes in human pancreatic islets', Diabetes, 65, pp. 996 - 1003, http://dx.doi.org/10.2337/db15-0956

Eamens AL; Kim KW; Curtin SJ; Waterhouse PM, 2012, 'DRB2 is required for microRNA biogenesis in Arabidopsis thaliana', PLoS ONE, 7, http://dx.doi.org/10.1371/journal.pone.0035933

Eamens AL; Kim KW; Waterhouse PM, 2012, 'DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana', Plant Signaling and Behavior, 7, pp. 1224 - 1229, http://dx.doi.org/10.4161/psb.21518

Conference Papers

Kim KW; Allen DW; Briese T; Pang CN; Jain K; Horton JL; Isaacs SR; Wilkins MR; Couper J; Penno MAS; Harrison LC; Morahan G; Harris M; Cotterill AM; Morbey C; Barry SC; Haynes A; Davis E; Colman P; Giles L; Dodd J; Wentworth J; Sinnott R; Papenfuss TA; Vuillermin P; Lipkin WI; Rawlinson WD; Craig ME, 2017, 'Gut Virome Dynamics during Pregnancy in Mothers with Type 1 Diabetes', in DIABETES, AMER DIABETES ASSOC, pp. LB51 - LB51, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000463087200189&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Horton JL; Kim KW; Pang CN; Jain K; Leung P; Isaacs SR; Bull RA; Luciani F; Wilkins MR; Lipkin WI; Rawlinson WD; Briese T; Craig ME, 2017, 'Virome-Capture Sequencing of the Gut and Plasma Virome in Children with Islet Autoimmunity', in DIABETES, AMER DIABETES ASSOC, pp. LB51 - LB52, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000463087200190&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Preprints

Foster CSP; Bull R; Tedla N; Santiago F; Agapiou D; Adhikari A; Walker G; Shrestha LB; van Hal S; Kim KW; Rawlinson W, 2022, Persistence of a SARS-CoV-2 variant with a frameshifting deletion for the duration of a major outbreak, http://dx.doi.org/10.1101/2022.09.06.22279658

Bull R; Adikari T; Ferguson J; Hammond J; Stevanovski I; Beukers A; Naing Z; Yeang M; Verich A; Gamaarachchi H; Kim KW; Luciani F; Stelzer-Braid S; Eden J-S; Rawlinson W; van Hal S; Deveson I, 2020, Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis, http://dx.doi.org/10.1101/2020.08.04.236893

Isaacs SR; Roy A; Dance B; Ward EJ; Foskett DB; Maxwell AJ; Rawlinson W; Kim KW; Craig ME, Enterovirus Infection and Risk of Islet Autoimmunity and Type 1 Diabetes: Systematic Review and Meta-Analysis of Molecular Studies, http://dx.doi.org/10.2139/ssrn.4308770

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