By Dr Martin Smith

Journal articles

Müller M; Padmanabhan PK; Rochette A; Mukherjee D; Smith M; Dumas C; Papadopoulou B, 2010, 'Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation', Nucleic Acids Research, 38, pp. 5867 - 5883, http://dx.doi.org/10.1093/nar/gkq349

Smith M; Bringaud F; Papadopoulou B, 2009, 'Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome', BMC Genomics, 10, http://dx.doi.org/10.1186/1471-2164-10-240

Rochette A; Raymond F; Ubeda JM; Smith M; Messier N; Boisvert S; Rigault P; Corbeil J; Ouellette M; Papadopoulou B, 2008, 'Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species', BMC Genomics, 9, http://dx.doi.org/10.1186/1471-2164-9-255

Smith M; Blanchette M; Papadopoulou B, 2008, 'Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania', BMC Bioinformatics, 9, http://dx.doi.org/10.1186/1471-2105-9-158

Bringaud F; Müller M; Cerqueira GC; Smith M; Rochette A; El-Sayed NMA; Papadopoulou B; Ghedin E, 2007, 'Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania', PLoS Pathogens, 3, pp. 1291 - 1307, http://dx.doi.org/10.1371/journal.ppat.0030136

Working Papers

Smith M; Ersavas T; Ferguson J; Liu H; Lucas M; Begik O; Bojarski L; Barton K; Novoa EM, 2019, Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning, http://dx.doi.org10.1101/864322

Preprints

Gaonac’h-Lovejoy V; Mattick JS; Sauvageau M; Smith MA, 2024, ECSfinder: Optimized prediction of evolutionarily conserved RNA secondary structures from genome sequences, http://dx.doi.org/10.1101/2024.09.14.612549

Raad S; David A; Sagniez M; Orfi Z; Dumont N; Smith M; Faure C, 2022, Directed differentiation of EA/TEF patient-derived induced pluripotent stem cells into esophageal epithelial organoids reveal SOX2 dysregulation at the anterior foregut stage, http://dx.doi.org/10.1101/2022.02.14.480418

Sagniez M; Simpson S; Caron M; Rozendaal M; Paré B; Sontag T; Langlois S; Rouette A; Lavallée V-P; Cellot S; Sinnett D; Tran TH; Smith M, 2022, Real-time molecular classification of leukemias, http://dx.doi.org/10.1101/2022.06.22.22276550

Hardwick SA; Bassett SD; Kaczorowski D; Blackburn J; Barton K; Bartonicek N; Carswell SL; Tilgner HU; Loy C; Halliday G; Mercer TR; Smith MA; Mattick JS, 2019, TARGETED, HIGH-RESOLUTION RNA SEQUENCING OF NON-CODING GENOMIC REGIONS ASSOCIATED WITH NEUROPSYCHIATRIC FUNCTIONS, http://dx.doi.org/10.1101/539882

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