Select Publications

Book Chapters

Chen BJ; Mills JD; Janitz C; Janitz M, 2016, 'RNA-sequencing to elucidate early patterns of dysregulation underlying the onset of Alzheimer's disease', in Systems Biology of Alzheimer's Disease, pp. 327 - 347, http://dx.doi.org/10.1007/978-1-4939-2627-5_20

Janitz K; Janitz M, 2011, 'Assessing Epigenetic Information', in Tollefsbol T (ed.), Handbook of Epigenetics, Academic Press, pp. 173 - 181, http://dx.doi.org/10.1016/B978-0-12-375709-8.00012-5

Journal articles

Mills JD; van Vliet EA; Chen BJ; Janitz M; Anink JJ; Baayen JC; Idema S; Devore S; Friedman D; Diehl B; Thom M; Scott C; Thijs R; Aronica E; Devinsky O, 2019, 'Coding and non-coding transcriptome of mesial temporal lobe epilepsy: Critical role of small non-coding RNAs.', Neurobiol Dis, pp. 104612, http://dx.doi.org/10.1016/j.nbd.2019.104612

Curry-Hyde A; Ueberham U; Arendt T; Janitz M, 2019, 'Neural circular transcriptomes across mammalian species', Genomics, http://dx.doi.org/10.1016/j.ygeno.2019.06.030

Chen BJ; Huang S; Janitz M, 2019, 'Changes in circular RNA expression patterns during human foetal brain development', Genomics, vol. 111, pp. 753 - 758, http://dx.doi.org/10.1016/j.ygeno.2018.04.015

Bliim N; Leshchyns'ka I; Keable R; Chen BJ; Curry-Hyde A; Gray L; Sytnyk V; Janitz M, 2018, 'Early transcriptome changes in response to chemical long-term potentiation induced via activation of synaptic NMDA receptors in mouse hippocampal neurons', Genomics, http://dx.doi.org/10.1016/j.ygeno.2018.11.019

Curry-Hyde A; Chen BJ; Ueberham U; Arendt T; Janitz M, 2018, 'Multiple System Atrophy: Many Lessons from the Transcriptome', Neuroscientist, vol. 24, pp. 294 - 307, http://dx.doi.org/10.1177/1073858417723915

Stefen H; Suchowerska AK; Chen BJ; Brettle M; Kuschelewski J; Gunning PW; Janitz M; Fath T, 2018, 'Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells', FEBS Open Bio, vol. 8, pp. 570 - 583, http://dx.doi.org/10.1002/2211-5463.12386

Chen BJ; Byrne FL; Takenaka K; Modesitt SC; Olzomer EM; Mills JD; Farrell R; Hoehn KL; Janitz M, 2018, 'Analysis of the circular RNA transcriptome in endometrial cancer', Oncotarget, vol. 9, pp. 5786 - 5796, http://dx.doi.org/10.18632/oncotarget.23534

Chen BJ; Yang B; Janitz M, 2018, 'Region-specific expression of circular RNAs in the mouse brain', Neuroscience Letters, vol. 666, pp. 44 - 47, http://dx.doi.org/10.1016/j.neulet.2017.12.022

Chen BJ; Byrne FL; Takenaka K; Modesitt SC; Olzomer EM; Mills JD; Farrell R; Hoehn KL; Janitz M, 2017, 'Transcriptome landscape of long intergenic non-coding RNAs in endometrial cancer', Gynecologic Oncology, vol. 147, pp. 654 - 662, http://dx.doi.org/10.1016/j.ygyno.2017.10.006

Arendt T; Ueberham U; Janitz M, 2017, 'Non-coding transcriptome in brain aging.', Aging (Albany NY), vol. 9, pp. 1943 - 1944, http://dx.doi.org/10.18632/aging.101290

Huang S; Yang B; Chen BJ; Bliim N; Ueberham U; Arendt T; Janitz M, 2017, 'The emerging role of circular RNAs in transcriptome regulation', Genomics, vol. 109, pp. 401 - 407, http://dx.doi.org/10.1016/j.ygeno.2017.06.005

Chen BJ; Ueberham U; Mills JD; Kirazov L; Kirazov E; Knobloch M; Bochmann J; Jendrek R; Takenaka K; Bliim N; Arendt T; Janitz M, 2017, 'RNA sequencing reveals pronounced changes in the noncoding transcriptome of aging synaptosomes', Neurobiology of Aging, vol. 56, pp. 67 - 77, http://dx.doi.org/10.1016/j.neurobiolaging.2017.04.005

Takenaka K; Chen BJ; Modesitt SC; Byrne FL; Hoehn KL; Janitz M, 2016, 'The emerging role of long non-coding RNAs in endometrial cancer', Cancer Genetics, vol. 209, pp. 445 - 455, http://dx.doi.org/10.1016/j.cancergen.2016.09.005

Chen BJ; Mills JD; Takenaka K; Bliim N; Halliday GM; Janitz M, 2016, 'Characterization of circular RNAs landscape in multiple system atrophy brain', Journal of Neurochemistry, vol. 139, pp. 485 - 496, http://dx.doi.org/10.1111/jnc.13752

Bliim N; Leshchyns’ka I; Sytnyk V; Janitz M, 2016, 'Transcriptional regulation of long-term potentiation', Neurogenetics, vol. 17, pp. 201 - 210, http://dx.doi.org/10.1007/s10048-016-0489-x

Mills JD; Ward M; Chen BJ; Iyer AM; Aronica E; Janitz M, 2016, 'LINC00507 Is Specifically Expressed in the Primate Cortex and Has Age-Dependent Expression Patterns', Journal of Molecular Neuroscience, vol. 59, pp. 431 - 439, http://dx.doi.org/10.1007/s12031-016-0745-4

Mills JD; Ward M; Kim WS; Halliday GM; Janitz M, 2016, 'Strand-specific RNA-sequencing analysis of multiple system atrophy brain transcriptome', Neuroscience, vol. 322, pp. 234 - 250, http://dx.doi.org/10.1016/j.neuroscience.2016.02.042

Mills JD; Chen BJ; Ueberham U; Arendt T; Janitz M, 2016, 'The Antisense Transcriptome and the Human Brain', Journal of Molecular Neuroscience, vol. 58, pp. 1 - 15, http://dx.doi.org/10.1007/s12031-015-0694-3

Mills JD; Kavanagh T; Kim WS; Chen BJ; Waters PD; Halliday GM; Janitz M, 2015, 'High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation', Molecular brain, vol. 8, pp. 2, http://dx.doi.org/10.1186/s13041-014-0091-9

Ward M; McEwan C; Mills JD; Janitz M, 2015, 'Conservation and tissue-specific transcription patterns of long noncoding RNAs.', J Hum Transcr, vol. 1, pp. 2 - 9, http://dx.doi.org/10.3109/23324015.2015.1077591

Mills JD; Chen BJ; Ueberham U; Arendt T; Janitz M, 2015, 'The Antisense Transcriptome and the Human Brain', Journal of Molecular Neuroscience, pp. 1 - 15, http://dx.doi.org/10.1007/s12031-015-0694-3

Lourenco GF; Janitz M; Huang Y; Halliday GM, 2015, 'Long noncoding RNAs in TDP-43 and FUS/TLS-related frontotemporal lobar degeneration (FTLD)', Neurobiology of Disease, vol. 82, pp. 445 - 454, http://dx.doi.org/10.1016/j.nbd.2015.07.011

Mills JD; Chen J; Kim WS; Waters PD; Prabowo AS; Aronica E; Halliday GM; Janitz M, 2015, 'Long intervening non-coding RNA 00320 is human brain-specific and highly expressed in the cortical white matter', Neurogenetics, vol. 16, pp. 201 - 213, http://dx.doi.org/10.1007/s10048-015-0445-1

Mills JD; Kim WS; Halliday GM; Janitz M, 2015, 'Transcriptome analysis of grey and white matter cortical tissue in multiple system atrophy', Neurogenetics, vol. 16, pp. 107 - 122, http://dx.doi.org/10.1007/s10048-014-0430-0

Chen J; Mills JD; Halliday GM; Janitz M, 2015, 'The role of transcriptional control in multiple system atrophy', Neurobiology of Aging, vol. 36, pp. 394 - 400, http://dx.doi.org/10.1016/j.neurobiolaging.2014.08.015

Mills JD; Sheahan PJ; Lai D; Kril JJ; Janitz M; Sutherland GT, 2014, 'The alternative splicing of the apolipoprotein E gene is unperturbed in the brains of Alzheimer’s disease patients', Molecular Biology Reports, vol. 41, pp. 6365 - 6376, http://dx.doi.org/10.1007/s11033-014-3516-8

Suchowerska A; Chen B; Mueller J; Ittner A; Hardeman E; Ittner L; Janitz M; Gunning P; Fath T, 2013, 'Increased levels of actin filaments containing the tropomyosin Tm5NM1 regulate excitotoxicity in the mouse', MOLECULAR BIOLOGY OF THE CELL, vol. 24, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000209348702020&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Mills JD; Kavanagh T; Kim WS; Chen BJ; Kawahara Y; Halliday GM; Janitz M, 2013, 'Unique Transcriptome Patterns of the White and Grey Matter Corroborate Structural and Functional Heterogeneity in the Human Frontal Lobe', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0078480

Twine NA; Janitz C; Wilkins MR; Janitz M, 2013, 'Sequencing of hippocampal and cerebellar transcriptomes provides new insights into the complexity of gene regulation in the human brain.', Neuroscience Letters, vol. 541, pp. 263 - 268, http://dx.doi.org/10.1016/j.neulet.2013.02.034

Mills JD; Nalpathamkalam T; Jacobs HIL; Janitz C; Merico D; Hu P; Janitz M, 2013, 'RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism', Neuroscience Letters, vol. 536, pp. 90 - 95, http://dx.doi.org/10.1016/j.neulet.2012.12.042

Mills JD; Kawahara Y; Janitz M, 2013, 'Strand-specific RNA-Seq provides greater resolution of transcriptome profiling', Current Genomics, vol. 14, pp. 173 - 181, http://dx.doi.org/10.2174/1389202911314030003

Janitz K; Janitz M, 2012, 'Moving Towards Third-Generation Sequencing Technologies', Tag-Based Next Generation Sequencing, pp. 323 - 336, http://dx.doi.org/10.1002/9783527644582.ch20

Kwong R; Lupton M; Janitz M, 2012, 'Single-cell and regional gene expression analysis in Alzheimer's disease.', Cellular and Molecular Neurobiology, vol. 32, pp. 477 - 489, http://dx.doi.org/10.1007/s10571-012-9797-3

Mills JD; Janitz M, 2012, 'Alternative splicing of mRNA in the molecular pathology of neurodegenerative diseases.', Neurobiology of Aging, vol. 33, pp. 1012.e11 - 1012.e24, http://dx.doi.org/10.1016/j.neurobiolaging.2011.10.030

Jacobs E; Mills JD; Janitz M, 2012, 'The role of RNA structure in posttranscriptional regulation of gene expression', Journal of Genetics and Genomics, vol. 39, pp. 535 - 543, http://dx.doi.org/10.1016/j.jgg.2012.08.002Document

Kavanagh T; Mills JD; Kim WS; Halliday GM; Janitz M, 2012, 'Pathway analysis of the human brain transcriptome in disease', Journal of Molecular Neuroscience, vol. Published online, pp. 28 - 36, http://dx.doi.org/10.1007/s12031-012-9940-0

Sutherland GT; Janitz M; Kril JJ, 2011, 'Understanding the pathogenesis of Alzheimer's disease: will RNA-Seq realize the promise of transcriptomics?', Journal of Neurochemistry, vol. 116, pp. 937 - 946, http://dx.doi.org/10.1111/j.1471-4159.2010.07157.x

Hu Y; Janitz M, 2011, 'High-throughput subcellular protein localization using transfected-cell arrays', Methods in Molecular Biology, vol. 706, pp. 53 - 72, http://dx.doi.org/10.1007/978-1-61737-970-3_5

Twine NA; Janitz K; Wilkins MR; Janitz M, 2011, 'Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease', PLoS One, vol. 6, pp. e16266, http://dx.doi.org/10.1371/journal.pone.0016266

Hu Y; Janitz M, 2011, 'High-throughput subcellular protein localization using transfected-cell arrays.', Methods in Molecular Biology, vol. 706, pp. 53 - 72, http://www.ncbi.nlm.nih.gov/pubmed/21104054

Cheng X; Guerasimova A; Manke T; Rosenstiel P; Haas S; Warnatz HJ; Querfurth R; Nietfeld W; Vanhecke D; Hans L; Yaspo ML; Janitz M, 2010, 'Screening of human gene promoter activities using transfected-cell arrays.', Gene, vol. 450, pp. 48 - 54, http://dx.doi.org/10.1016/j.gene.2009.10.003

Hu Y; Lehrach H; Janitz M, 2010, 'Apoptosis screening of human chromosome 21 proteins reveals novel cell death regulators', Molecular Biology Reports, vol. 37, pp. 3381 - 3387, http://dx.doi.org/10.1007/s11033-009-9926-3

Courtney E; Kornfeld S; Janitz K; Janitz M, 2010, 'Transcriptome profiling in neurodegenerative disease', Journal of Neuroscience Methods, vol. 193, pp. 189 - 202, http://dx.doi.org/10.1016/j.jneumeth.2010.08.018

Warnatz HJ; Querfurth R; Guerasimova A; Cheng X; Haas S; Hufton AL; Manke T; Vanhecke D; Nietfeld W; Vingron M; Janitz M; Hans L; Yaspo ML, 2010, 'Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters.', Nucleic Acids Research, vol. 38, pp. 6112 - 6123, http://dx.doi.org/10.1093/nar/gkq402

Hu Y; Hans L; Janitz M, 2009, 'Comparative analysis of an experimental subcellular protein localization assay and in silico prediction methods', Journal of Molecular Histology, vol. 40, pp. 343 - 352, http://dx.doi.org/10.1007/s10735-009-9247-9

Janitz M, 2008, 'Preface', Next Generation Genome Sequencing: Towards Personalized Medicine, http://dx.doi.org/10.1002/9783527625130

Janitz M; Niesner U; Albrecht I; Janke M; Doebis C; Loddenkemper C; Lexberg MH; Eulenburg K; Kreher S; Koeck J; Baumgrass R; Enghard P; Humrich JY; Rutz S; Bonhagen K; Kamradt T, 2008, 'Autoregulation of Th1-mediated inflammation by twist1.', Journal of Experimental Medicine, vol. 205, pp. 1889 - 1901, http://dx.doi.org/10.1084/jem.20072468

Guerasimova A; Nyarsik L; Liu JP; Schwartz R; Lange M; Lehrach H; Janitz M, 2006, 'Liquid-based hybridization assay with real-time detection in miniaturized array platforms', Biomolecular Engineering, vol. 23, pp. 35 - 40, http://dx.doi.org/10.1016/j.bioeng.2005.09.005


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