By Dr Michael Janitz

Journal articles

Cheng Y; Xu SM; Santucci K; Lindner G; Janitz M, 2024, 'Machine learning and related approaches in transcriptomics', Biochemical and Biophysical Research Communications, 724, http://dx.doi.org/10.1016/j.bbrc.2024.150225

Gao Y; Xu SM; Cheng Y; Takenaka K; Lindner G; Janitz M, 2024, 'Investigation of the Circular Transcriptome in Alzheimer’s Disease Brain', Journal of Molecular Neuroscience, 74, http://dx.doi.org/10.1007/s12031-024-02236-0

Santucci K; Cheng Y; Xu S-M; Janitz M, 2024, 'Enhancing novel isoform discovery: leveraging nanopore long-read sequencing and machine learning approaches.', Brief Funct Genomics, http://dx.doi.org/10.1093/bfgp/elae031

Hargett S; Lahiri S; Kowalski GM; Corley S; Nelson ME; Lackner C; Olzomer EM; Aleksovska I; Hearn BA; Shrestha R; Janitz M; Gorrell MD; Bruce CR; Wilkins M; Hoehn KL; Byrne FL, 2024, 'Bile acids mediate fructose-associated liver tumour growth in mice', Biochimica et Biophysica Acta - Molecular Basis of Disease, 1870, http://dx.doi.org/10.1016/j.bbadis.2024.167029

Xu SM; Cheng Y; Fisher H; Janitz M, 2024, 'Recent advances in the investigation of fusion RNAs and their role in molecular pathology of cancer', International Journal of Biochemistry and Cell Biology, 168, http://dx.doi.org/10.1016/j.biocel.2024.106529

Lindner G; Takenaka K; Santucci K; Gao Y; Janitz M, 2023, 'Protein-coding circular RNAs – mechanism, detection, and their role in cancer and neurodegenerative diseases', Biochemical and Biophysical Research Communications, 678, pp. 68 - 77, http://dx.doi.org/10.1016/j.bbrc.2023.08.037

Lee SA; Liu F; Yuwono C; Phan M; Chong S; Biazik J; Tay ACY; Janitz M; Riordan SM; Lan R; Wehrhahn MC; Zhang L, 2023, 'Emerging Aeromonas enteric infections: their association with inflammatory bowel disease and novel pathogenic mechanisms', Microbiology Spectrum, 11, http://dx.doi.org/10.1128/spectrum.01088-23

Cheng Y; Xu SM; Takenaka K; Lindner G; Curry-Hyde A; Janitz M, 2023, 'A unique circular RNA expression pattern in the peripheral blood of myalgic encephalomyelitis/chronic fatigue syndrome patients', Gene, 877, http://dx.doi.org/10.1016/j.gene.2023.147568

Takenaka K; Olzomer EM; Hoehn KL; Curry-Hyde A; Jun Chen B; Farrell R; Byrne FL; Janitz M, 2023, 'Investigation of circular RNA transcriptome in obesity-related endometrial cancer', Gene, 855, http://dx.doi.org/10.1016/j.gene.2022.147125

Aquilina-Reid C; Brennan S; Curry-Hyde A; Teunisse GM; Janitz M, 2022, 'Circular RNA Expression and Interaction Patterns Are Perturbed in Amyotrophic Lateral Sclerosis', International Journal of Molecular Sciences, 23, http://dx.doi.org/10.3390/ijms232314665

Leitner DF; Devore S; Laze J; Friedman D; Mills JD; Liu Y; Janitz M; Anink J; Baayen JC; Idema S; van Vliet EA; Diehl B; Scott C; Thijs R; Nei M; Askenazi M; Sivathamboo S; O'Brien T; Wisniewski T; Thom M; Aronica E; Boldrini M; Devinsky O, 2022, 'Serotonin receptor expression in hippocampus and temporal cortex of temporal lobe epilepsy patients by postictal generalized electroencephalographic suppression duration', Epilepsia, 63, pp. 2925 - 2936, http://dx.doi.org/10.1111/epi.17400

Takenaka K; Curry-Hyde A; Olzomer EM; Farrell R; Byrne FL; Janitz M, 2022, 'Investigation of Transcriptome Patterns in Endometrial Cancers from Obese and Lean Women', International Journal of Molecular Sciences, 23, http://dx.doi.org/10.3390/ijms231911471

Xu SM; Curry-Hyde A; Sytnyk V; Janitz M, 2022, 'RNA polyadenylation patterns in the human transcriptome', Gene, 816, http://dx.doi.org/10.1016/j.gene.2021.146133

Leitner DF; Mills JD; Pires G; Faustin A; Drummond E; Kanshin E; Nayak S; Askenazi M; Verducci C; Chen BJ; Janitz M; Anink JJ; Baayen JC; Idema S; Van Vliet EA; Devore S; Friedman D; Diehl B; Scott C; Thijs R; Wisniewski T; Ueberheide B; Thom M; Aronica E; Devinsky O, 2021, 'Proteomics and transcriptomics of the hippocampus and cortex in sudep and high-risk sudep patients', Neurology, 96, pp. E2639 - E2652, http://dx.doi.org/10.1212/WNL.0000000000011999

Curry-Hyde A; Ueberham U; Chen BJ; Zipfel I; Mills JD; Bochmann J; Jendrek R; Takenaka K; Kirazov L; Kirazov E; Jünger J; Brückner MK; Arendt T; Janitz M, 2020, 'Analysis of the Circular Transcriptome in the Synaptosomes of Aged Mice', Neuroscience, 449, pp. 202 - 213, http://dx.doi.org/10.1016/j.neuroscience.2020.09.009

Kozlova I; Sah S; Keable R; Leshchyns’ka I; Janitz M; Sytnyk V, 2020, 'Cell Adhesion Molecules and Protein Synthesis Regulation in Neurons', Frontiers in Molecular Neuroscience, 13, http://dx.doi.org/10.3389/fnmol.2020.592126

Curry-Hyde A; Gray LG; Chen BJ; Ueberham U; Arendt T; Janitz M, 2020, 'Cell type-specific circular RNA expression in human glial cells', Genomics, 112, pp. 5265 - 5274, http://dx.doi.org/10.1016/j.ygeno.2020.09.042

Gray LG; Mills JD; Curry-Hyde A; Devore S; Friedman D; Thom M; Scott C; Thijs RD; Aronica E; Devinsky O; Janitz M, 2020, 'Identification of Specific Circular RNA Expression Patterns and MicroRNA Interaction Networks in Mesial Temporal Lobe Epilepsy', Frontiers in Genetics, 11, http://dx.doi.org/10.3389/fgene.2020.564301

Curry-Hyde A; Ueberham U; Arendt T; Janitz M, 2020, 'Neural circular transcriptomes across mammalian species', Genomics, 112, pp. 1162 - 1166, http://dx.doi.org/10.1016/j.ygeno.2019.06.030

Mills JD; van Vliet EA; Chen BJ; Janitz M; Anink JJ; Baayen JC; Idema S; Devore S; Friedman D; Diehl B; Thom M; Scott C; Thijs R; Aronica E; Devinsky O, 2020, 'Coding and non-coding transcriptome of mesial temporal lobe epilepsy: Critical role of small non-coding RNAs', Neurobiology of Disease, 134, http://dx.doi.org/10.1016/j.nbd.2019.104612

Bliim N; Leshchyns'ka I; Keable R; Chen BJ; Curry-Hyde A; Gray L; Sytnyk V; Janitz M, 2019, 'Early transcriptome changes in response to chemical long-term potentiation induced via activation of synaptic NMDA receptors in mouse hippocampal neurons', Genomics, 111, pp. 1676 - 1686, http://dx.doi.org/10.1016/j.ygeno.2018.11.019

Chen BJ; Huang S; Janitz M, 2019, 'Changes in circular RNA expression patterns during human foetal brain development', Genomics, 111, pp. 753 - 758, http://dx.doi.org/10.1016/j.ygeno.2018.04.015

Curry-Hyde A; Chen BJ; Ueberham U; Arendt T; Janitz M, 2018, 'Multiple System Atrophy: Many Lessons from the Transcriptome', Neuroscientist, 24, pp. 294 - 307, http://dx.doi.org/10.1177/1073858417723915

Stefen H; Suchowerska AK; Chen BJ; Brettle M; Kuschelewski J; Gunning PW; Janitz M; Fath T, 2018, 'Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells', FEBS Open Bio, 8, pp. 570 - 583, http://dx.doi.org/10.1002/2211-5463.12386

Chen BJ; Yang B; Janitz M, 2018, 'Region-specific expression of circular RNAs in the mouse brain', Neuroscience Letters, 666, pp. 44 - 47, http://dx.doi.org/10.1016/j.neulet.2017.12.022

Chen BJ; Byrne FL; Takenaka K; Modesitt SC; Olzomer EM; Mills JD; Farrell R; Hoehn KL; Janitz M, 2018, 'Analysis of the circular RNA transcriptome in endometrial cancer', Oncotarget, 9, pp. 5786 - 5796, http://dx.doi.org/10.18632/oncotarget.23534

Curry-Hyde A; Chen BJ; Mills JD; Janitz M, 2018, 'Microexons: novel regulators of the transcriptome', Journal of Human Transcriptome, 2, pp. 1 - 6, http://dx.doi.org/10.1080/23324015.2018.1491940

Chen BJ; Byrne FL; Takenaka K; Modesitt SC; Olzomer EM; Mills JD; Farrell R; Hoehn KL; Janitz M, 2017, 'Transcriptome landscape of long intergenic non-coding RNAs in endometrial cancer', Gynecologic Oncology, 147, pp. 654 - 662, http://dx.doi.org/10.1016/j.ygyno.2017.10.006

Huang S; Yang B; Chen BJ; Bliim N; Ueberham U; Arendt T; Janitz M, 2017, 'The emerging role of circular RNAs in transcriptome regulation', Genomics, 109, pp. 401 - 407, http://dx.doi.org/10.1016/j.ygeno.2017.06.005

Arendt T; Ueberham U; Janitz M, 2017, 'Non-coding transcriptome in brain aging', Aging, 9, pp. 1943 - 1944, http://dx.doi.org/10.18632/aging.101290

Chen BJ; Ueberham U; Mills JD; Kirazov L; Kirazov E; Knobloch M; Bochmann J; Jendrek R; Takenaka K; Bliim N; Arendt T; Janitz M, 2017, 'RNA sequencing reveals pronounced changes in the noncoding transcriptome of aging synaptosomes', Neurobiology of Aging, 56, pp. 67 - 77, http://dx.doi.org/10.1016/j.neurobiolaging.2017.04.005

Chen BJ; Mills JD; Takenaka K; Bliim N; Halliday GM; Janitz M, 2016, 'Characterization of circular RNAs landscape in multiple system atrophy brain', Journal of Neurochemistry, 139, pp. 485 - 496, http://dx.doi.org/10.1111/jnc.13752

Takenaka K; Chen BJ; Modesitt SC; Byrne FL; Hoehn KL; Janitz M, 2016, 'The emerging role of long non-coding RNAs in endometrial cancer', Cancer Genetics, 209, pp. 445 - 455, http://dx.doi.org/10.1016/j.cancergen.2016.09.005

Bliim N; Leshchyns’ka I; Sytnyk V; Janitz M, 2016, 'Transcriptional regulation of long-term potentiation', Neurogenetics, 17, pp. 201 - 210, http://dx.doi.org/10.1007/s10048-016-0489-x

Mills JD; Ward M; Chen BJ; Iyer AM; Aronica E; Janitz M, 2016, 'LINC00507 Is Specifically Expressed in the Primate Cortex and Has Age-Dependent Expression Patterns', Journal of Molecular Neuroscience, 59, pp. 431 - 439, http://dx.doi.org/10.1007/s12031-016-0745-4

Mills JD; Ward M; Kim WS; Halliday GM; Janitz M, 2016, 'Strand-specific RNA-sequencing analysis of multiple system atrophy brain transcriptome', Neuroscience, 322, pp. 234 - 250, http://dx.doi.org/10.1016/j.neuroscience.2016.02.042

Mills JD; Chen BJ; Ueberham U; Arendt T; Janitz M, 2016, 'The Antisense Transcriptome and the Human Brain', Journal of Molecular Neuroscience, 58, pp. 1 - 15, http://dx.doi.org/10.1007/s12031-015-0694-3

Mills JD; Chen BJ; Ueberham U; Arendt T; Janitz M, 2015, 'The Antisense Transcriptome and the Human Brain', Journal of Molecular Neuroscience, pp. 1 - 15, http://dx.doi.org/10.1007/s12031-015-0694-3

Lourenco GF; Janitz M; Huang Y; Halliday GM, 2015, 'Long noncoding RNAs in TDP-43 and FUS/TLS-related frontotemporal lobar degeneration (FTLD)', Neurobiology of Disease, 82, pp. 445 - 454, http://dx.doi.org/10.1016/j.nbd.2015.07.011

Mills JD; Chen J; Kim WS; Waters PD; Prabowo AS; Aronica E; Halliday GM; Janitz M, 2015, 'Long intervening non-coding RNA 00320 is human brain-specific and highly expressed in the cortical white matter', Neurogenetics, 16, pp. 201 - 213, http://dx.doi.org/10.1007/s10048-015-0445-1

Mills JD; Kim WS; Halliday GM; Janitz M, 2015, 'Transcriptome analysis of grey and white matter cortical tissue in multiple system atrophy', Neurogenetics, 16, pp. 107 - 122, http://dx.doi.org/10.1007/s10048-014-0430-0

Mills JD; Kavanagh T; Kim WS; Chen BJ; Waters PD; Halliday GM; Janitz M, 2015, 'High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation', Molecular brain, 8, pp. 2, http://dx.doi.org/10.1186/s13041-014-0091-9

Ward M; McEwan C; Mills JD; Janitz M, 2015, 'Conservation and tissue-specific transcription patterns of long noncoding RNAs.', J Hum Transcr, 1, pp. 2 - 9, http://dx.doi.org/10.3109/23324015.2015.1077591

Chen J; Mills JD; Halliday GM; Janitz M, 2015, 'The role of transcriptional control in multiple system atrophy', Neurobiology of Aging, 36, pp. 394 - 400, http://dx.doi.org/10.1016/j.neurobiolaging.2014.08.015

Mills JD; Sheahan PJ; Lai D; Kril JJ; Janitz M; Sutherland GT, 2014, 'The alternative splicing of the apolipoprotein E gene is unperturbed in the brains of Alzheimer’s disease patients', Molecular Biology Reports, 41, pp. 6365 - 6376, http://dx.doi.org/10.1007/s11033-014-3516-8

Mills JD; Kavanagh T; Kim WS; Chen BJ; Kawahara Y; Halliday GM; Janitz M, 2013, 'Unique Transcriptome Patterns of the White and Grey Matter Corroborate Structural and Functional Heterogeneity in the Human Frontal Lobe', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0078480

Suchowerska A; Chen B; Mueller J; Ittner A; Hardeman E; Ittner L; Janitz M; Gunning P; Fath T, 2013, 'Increased levels of actin filaments containing the tropomyosin Tm5NM1 regulate excitotoxicity in the mouse', MOLECULAR BIOLOGY OF THE CELL, 24, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000209348702020&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Mills JD; Nalpathamkalam T; Jacobs HIL; Janitz C; Merico D; Hu P; Janitz M, 2013, 'RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism', Neuroscience Letters, 536, pp. 90 - 95, http://dx.doi.org/10.1016/j.neulet.2012.12.042

Twine NA; Janitz C; Wilkins MR; Janitz M, 2013, 'Sequencing of hippocampal and cerebellar transcriptomes provides new insights into the complexity of gene regulation in the human brain.', Neuroscience Letters, 541, pp. 263 - 268, http://dx.doi.org/10.1016/j.neulet.2013.02.034

Mills JD; Kawahara Y; Janitz M, 2013, 'Strand-specific RNA-Seq provides greater resolution of transcriptome profiling', Current Genomics, 14

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