Select Publications

Journal articles

Godakumara K; Ord J; Lättekivi F; Dissanayake K; Viil J; Boggavarapu NR; Faridani OR; Jääger K; Velthut-Meikas A; Jaakma Ü; Salumets A; Fazeli A, 2021, 'Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication', Reproductive Biology and Endocrinology, vol. 19, pp. 115, http://dx.doi.org/10.1186/s12958-021-00801-5

Zheleznyakova GY; Piket E; Needhamsen M; Hagemann-Jensen M; Ekman D; Han Y; James T; Khademi M; Al Nimer F; Scicluna P; Huang J; Kockum I; Faridani OR; Olsson T; Piehl F; Jagodic M, 2021, 'Small noncoding RNA profiling across cellular and biofluid compartments and their implications for multiple sclerosis immunopathology', Proceedings of the National Academy of Sciences of the United States of America, vol. 118, http://dx.doi.org/10.1073/pnas.2011574118

Hagemann-Jensen M; Ziegenhain C; Chen P; Ramsköld D; Hendriks GJ; Larsson AJM; Faridani OR; Sandberg R, 2020, 'Single-cell RNA counting at allele and isoform resolution using Smart-seq3', Nature Biotechnology, vol. 38, pp. 708 - 714, http://dx.doi.org/10.1038/s41587-020-0497-0

Zheleznyakova GY; Piket E; Needhamsen M; Hagemann-Jensen M; Ekman D; Khademi M; Nimer FA; Scicluna P; Faridani O; Olsson T; Piehl F; Jagodic M, 2020, 'Profiling of small non-coding RNAs across cellular and biofluid compartments: implications for multiple sclerosis immunopathology', , http://dx.doi.org/10.1101/2020.05.15.097519

Ramsköld D; Luo S; Wang YC; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R, 2020, 'Author Correction: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells (Nature Biotechnology, (2012), 30, 8, (777-782), 10.1038/nbt.2282)', Nature Biotechnology, vol. 38, pp. 374, http://dx.doi.org/10.1038/s41587-020-0427-1

Larsson AJM; Johnsson P; Hagemann-Jensen M; Hartmanis L; Faridani OR; Reinius B; Segerstolpe Å; Rivera CM; Ren B; Sandberg R, 2019, 'Genomic encoding of transcriptional burst kinetics', Nature, vol. 565, pp. 251 - 254, http://dx.doi.org/10.1038/s41586-018-0836-1

Hagemann-Jensen M; Abdullayev I; Sandberg R; Faridani OR, 2018, 'Small-seq for single-cell small-RNA sequencing', Nature Protocols, vol. 13, pp. 2407 - 2424, http://dx.doi.org/10.1038/s41596-018-0049-y

Faridani OR; Abdullayev I; Hagemann-Jensen M; Schell JP; Lanner F; Sandberg R, 2016, 'Single-cell sequencing of the small-RNA transcriptome', Nature Biotechnology, vol. 34, pp. 1264 - 1266, http://dx.doi.org/10.1038/nbt.3701

Simonson OE; Mougiakakos D; Heldring N; Bassi G; Johansson HJ; Dalen M; Jitschin R; Rodin S; Corbascio M; El Andaloussi S; Wiklander OPB; Nordin JZ; Skog J; Romain C; Koestler T; Hellgren-Johansson L; Schiller P; Joachimsson P-O; Hagglund H; Mattsson M; Lehtio J; Faridani OR; Sandberg R; Korsgren O; Krampera M; Weiss DJ; Grinnemo K-H; Le Blanc K, 2016, 'In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome (vol 4, pg 1199, 2015)', STEM CELLS TRANSLATIONAL MEDICINE, vol. 5, pp. 845 - 845, http://dx.doi.org/10.5966/sctm.2015-0021erratum

Simonson OE; Mougiakakos D; Heldring N; Bassi G; Johansson HJ; Dalén M; Jitschin R; Rodin S; Corbascio M; El Andaloussi S; Wiklander OPB; Nordin JZ; Skog J; Romain C; Koestler T; Hellgren-Johansson L; Schiller P; Joachimsson PO; Hägglund H; Mattiasmattsson M; Lehtiö J; Faridani OR; Sandberg R; Korsgren O; Krampera M; Weiss DJ; Grinnemo KH; Le Blanc K, 2015, 'In vivo effects of mesenchymal stromal cells in two patients with severe acute respiratory distress syndrome', Stem Cells Translational Medicine, vol. 4, pp. 1199 - 1213, http://dx.doi.org/10.5966/sctm.2015-0021

Faridani OR; Sandberg R, 2015, 'Putting cells in their place', Nature biotechnology, vol. 33, pp. 490 - 491, http://dx.doi.org/10.1038/nbt.3219

Callegari S; Gastaldello S; Faridani OR; Masucci MG, 2014, 'Epstein-Barr virus encoded microRNAs target SUMO-regulated cellular functions', FEBS Journal, vol. 281, pp. 4935 - 4950, http://dx.doi.org/10.1111/febs.13040

Picelli S; Faridani OR; Björklund AK; Winberg G; Sagasser S; Sandberg R, 2014, 'Full-length RNA-seq from single cells using Smart-seq2', Nature Protocols, vol. 9, pp. 171 - 181, http://dx.doi.org/10.1038/nprot.2014.006

Picelli S; Björklund AK; Faridani OR; Sagasser S; Winberg G; Sandberg R, 2013, 'Smart-seq2 for sensitive full-length transcriptome profiling in single cells', Nature Methods, vol. 10, pp. 1096 - 1100, http://dx.doi.org/10.1038/nmeth.2639

Ramsköld D; Luo S; Wang YC; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R, 2012, 'Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells', Nature Biotechnology, vol. 30, pp. 777 - 782, http://dx.doi.org/10.1038/nbt.2282

Arefian E; Kiani J; Soleimani M; Shariati SAM; Aghaee-Bakhtiari SH; Atashi A; Gheisari Y; Ahmadbeigi N; Banaei-Moghaddam AM; Naderi M; Namvarasl N; Good L; Faridani OR, 2011, 'Analysis of microRNA signatures using size-coded ligation-mediated PCR', Nucleic Acids Research, vol. 39, http://dx.doi.org/10.1093/nar/gkr214

Gastaldello S; Hildebrand S; Faridani O; Callegari S; Palmkvist M; Di Guglielmo C; Masucci MG, 2010, 'A deneddylase encoded by Epstein-Barr virus promotes viral DNA replication by regulating the activity of cullin-RING ligases', Nature Cell Biology, vol. 12, pp. 351 - 361, http://dx.doi.org/10.1038/ncb2035

Faridani OR; Mcinerney GM; Gradin K; Good L, 2008, 'Specific ligation to double-stranded RNA for analysis of cellular RNA::RNA interactions', Nucleic Acids Research, vol. 36, http://dx.doi.org/10.1093/nar/gkn445

Nikravesh A; Dryselius R; Faridani OR; Goh S; Sadeghizadeh M; Behmanesh M; Ganyu A; Klok EJ; Zain R; Good L, 2007, 'Antisense PNA accumulates in Escherichia coli and mediates a long post-antibiotic effect', Molecular Therapy, vol. 15, pp. 1537 - 1542, http://dx.doi.org/10.1038/sj.mt.6300209

Faridani OR; Nikravesh A; Pandey DP; Gerdes K; Good L, 2006, 'Competitive inhibition of natural antisense Sok-RNA interactions activates Hok-mediated cell killing in Escherichia coli', Nucleic Acids Research, vol. 34, pp. 5915 - 5922, http://dx.doi.org/10.1093/nar/gkl750


Back to profile page