ORCID as entered in ROS

Select Publications
2023, 'Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions', Molecular Biology and Evolution, 40, http://dx.doi.org/10.1093/molbev/msad046
,2023, 'Evolutionary genomics: Insights from the invasive European starlings', Frontiers in Genetics, 13, pp. 1010456, http://dx.doi.org/10.3389/fgene.2022.1010456
,2023, 'The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology', GigaScience, 12, http://dx.doi.org/10.1093/gigascience/giad018
,2022, 'Metaproteomics reveals methyltransferases implicated in dichloromethane and glycine betaine fermentation by ‘Candidatus Formimonas warabiya’ strain DCMF', Frontiers in Microbiology, 13, pp. 1035247, http://dx.doi.org/10.3389/fmicb.2022.1035247
,2022, 'Transcript- and annotation-guided genome assembly of the European starling', Molecular Ecology Resources, 22, pp. 3141 - 3160, http://dx.doi.org/10.1111/1755-0998.13679
,2022, 'Chromosome-level de novo genome assembly of Telopea speciosissima (New South Wales waratah) using long-reads, linked-reads and Hi-C', Molecular Ecology Resources, 22, pp. 1836 - 1854, http://dx.doi.org/10.1111/1755-0998.13574
,2022, 'The Australian dingo is an early offshoot of modern breed dogs', Science Advances, 8, http://dx.doi.org/10.1126/sciadv.abm5944
,2022, 'Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes', Genes, 13, pp. 217 - 217, http://dx.doi.org/10.3390/genes13020217
,2022, 'Limited Introgression between Rock-Wallabies with Extensive Chromosomal Rearrangements', Molecular Biology and Evolution, 39, http://dx.doi.org/10.1093/molbev/msab333
,2021, 'Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome', BMC Genomics, 22, http://dx.doi.org/10.1186/s12864-021-07493-6
,2021, 'Antarctic desert soil bacteria exhibit high novel natural product potential, evaluated through long-read genome sequencing and comparative genomics', Environmental Microbiology, 23, pp. 3646 - 3664, http://dx.doi.org/10.1111/1462-2920.15300
,2021, 'Intergenerational effects of manipulating DNA methylation in the early life of an iconic invader', Philosophical Transactions of the Royal Society B: Biological Sciences, 376, http://dx.doi.org/10.1098/rstb.2020.0125
,2021, 'Chromosome-levelde novogenome assembly ofTelopea speciosissima(New South Wales waratah) using long-reads, linked-reads and Hi-C', , http://dx.doi.org/10.1101/2021.06.02.444084
,2021, 'Horizontal transposon transfer and its implications for the ancestral ecology of hydrophiine snakes', , http://dx.doi.org/10.1101/2021.06.22.449521
,2020, 'Do epigenetic changes drive corticosterone responses to alarm cues in larvae of an invasive Amphibian?', Integrative and Comparative Biology, 60, pp. 1481 - 1494, http://dx.doi.org/10.1093/icb/icaa082
,2020, 'Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome', bioRxiv, http://dx.doi.org/10.1101/2020.11.11.379073
,2020, 'Isolation and molecular characterisation of Dunaliella tertiolecta with truncated light-harvesting antenna for enhanced photosynthetic efficiency', Algal Research, 48, http://dx.doi.org/10.1016/j.algal.2020.101917
,2020, 'Canfam-GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C', GigaScience, 9, http://dx.doi.org/10.1093/gigascience/giaa027
,2020, 'Computational prediction of disordered protein motifs using SLiMSuite', Methods in molecular biology (Clifton, N.J.), 2141, pp. 37 - 72, http://dx.doi.org/10.1007/978-1-0716-0524-0_3
,2019, 'Complete genome sequences of pooled genomic DNA from 10 marine bacteria using PacBio long-read sequencing', Marine Genomics, 48, http://dx.doi.org/10.1016/j.margen.2019.05.002
,2019, 'An intrinsically disordered proteins community for elixir [version 1; peer review: 2 approved]', F1000Research, 8, http://dx.doi.org/10.12688/f1000research.20136.1
,2019, 'Whole genome sequencing of a novel, dichloromethane-fermenting Peptococcaceae from an enrichment culture', PeerJ, 2019, http://dx.doi.org/10.7717/peerj.7775
,2018, 'SLiM-Enrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions', PEERJ, 6, http://dx.doi.org/10.7717/peerj.5858
,2018, 'Draft genome assembly of the invasive cane toad, Rhinella marina', GigaScience, 7, http://dx.doi.org/10.1093/gigascience/giy095
,2018, 'Correction: SLiMEnrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions.', PeerJ, 6, http://dx.doi.org/10.7717/peerj.5858/correction-1
,2017, 'High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer', INFECTIOUS AGENTS AND CANCER, 12, http://dx.doi.org/10.1186/s13027-017-0157-2
,2017, 'Biochar alters the soil microbiome and soil function: results of next-generation amplicon sequencing across Europe', GCB Bioenergy, 9, pp. 591 - 612, http://dx.doi.org/10.1111/gcbb.12371
,2016, 'Plant adaptation or acclimation to rising CO
2016, 'Parallel evolution in streptococcus pneumoniae biofilms', Genome Biology and Evolution, 8, pp. 1316 - 1326, http://dx.doi.org/10.1093/gbe/evw072
,2016, 'Quantitative proteomics of the infectious and replicative forms of Chlamydia trachomatis', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0149011
,2016, 'Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome', BMC Genomics, 17, pp. 1 - 11, http://dx.doi.org/10.1186/s12864-016-2746-7
,2015, 'QSLiM Finder: Improved short linear motif prediction using specific query protein data', Bioinformatics, 31, pp. 2284 - 2293, http://dx.doi.org/10.1093/bioinformatics/btv155
,2015, 'Metabotropic glutamate receptors: Modulators of context-dependent feeding behaviour in C. elegans', Journal of Biological Chemistry, 290, pp. 15052 - 15065, http://dx.doi.org/10.1074/jbc.M114.606608
,2015, 'GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training', PLoS Computational Biology, 11, http://dx.doi.org/10.1371/journal.pcbi.1004143
,2015, 'Computational prediction of short linear motifs from protein sequences', Methods in Molecular Biology, 1268, pp. 89 - 141, http://dx.doi.org/10.1007/978-1-4939-2285-7_6
,2015, 'Fluorescent protein-mediated colour polymorphism in reef corals: Multicopy genes extend the adaptation/acclimatization potential to variable light environments', Molecular Ecology, 24, pp. 453 - 465, http://dx.doi.org/10.1111/mec.13041
,2015, 'Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training.', PLoS Comput Biol, 11, pp. e1004281, http://dx.doi.org/10.1371/journal.pcbi.1004281
,2015, 'SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks', F1000Research, 4, pp. 477, http://dx.doi.org/10.12688/f1000research.6773.1
,2013, 'Responses of the Emiliania huxleyi Proteome to Ocean Acidification', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0061868
,2012, 'HSP-4 endoplasmic reticulum (ER) stress pathway is not activated in a C. elegans model of ethanol intoxication and withdrawal', Invertebrate Neuroscience, 12, pp. 93 - 102, http://dx.doi.org/10.1007/s10158-012-0136-7
,2012, 'SLiMPrints: Conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions', Nucleic Acids Research, 40, pp. 10628 - 10641, http://dx.doi.org/10.1093/nar/gks854
,2012, 'ELM - The database of eukaryotic linear motifs', Nucleic Acids Research, 40, http://dx.doi.org/10.1093/nar/gkr1064
,2012, 'Interactome-wide prediction of short, disordered protein interaction motifs in humans', Molecular BioSystems, 8, pp. 282 - 295, http://dx.doi.org/10.1039/c1mb05212h
,2011, 'SLiMSearch 2.0: Biological context for short linear motifs in proteins', Nucleic Acids Research, 39, http://dx.doi.org/10.1093/nar/gkr402
,2011, 'Selective toxicity of the anthelmintic emodepside revealed by heterologous expression of human KCNMA1 in Caenorhabditis elegans', Molecular Pharmacology, 79, pp. 1031 - 1043, http://dx.doi.org/10.1124/mol.111.071043
,2011, 'Shotgun Proteomic Analysis of Emiliania huxleyi, a Marine Phytoplankton Species of Major Biogeochemical Importance', Marine Biotechnology, 13, pp. 496 - 504, http://dx.doi.org/10.1007/s10126-010-9320-0
,2010, 'SLiMSearch: A webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context', Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 6282 LNBI, pp. 50 - 61, http://dx.doi.org/10.1007/978-3-642-16001-1_5
,2010, 'Protein interactions with the platelet integrin aIIb regulatory motif', Proteomics, 10, pp. 2790 - 2800, http://dx.doi.org/10.1002/pmic.200900621
,2010, 'Computational identification and analysis of protein short linear motifs', Frontiers in Bioscience, 15, pp. 801 - 825, http://dx.doi.org/10.2741/3647
,2010, 'SLiMFinder: A web server to find novel, significantly over-represented, short protein motifs', Nucleic Acids Research, 38, http://dx.doi.org/10.1093/nar/gkq440
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