By Dr Robert Weatheritt

Preprints

Luck K; Kim D-K; Lambourne L; Spirohn K; Begg BE; Bian W; Brignall R; Cafarelli T; Campos-Laborie FJ; Charloteaux B; Choi D; Cote AG; Daley M; Deimling S; Desbuleux A; Dricot A; Gebbia M; Hardy MF; Kishore N; Knapp JJ; Kovács IA; Lemmens I; Mee MW; Mellor JC; Pollis C; Pons C; Richardson AD; Schlabach S; Teeking B; Yadav A; Babor M; Balcha D; Basha O; Bowman-Colin C; Chin S-F; Choi SG; Colabella C; Coppin G; D’Amata C; De Ridder D; De Rouck S; Duran-Frigola M; Ennajdaoui H; Goebels F; Goehring L; Gopal A; Haddad G; Hatchi E; Helmy M; Jacob Y; Kassa Y; Landini S; Li R; van Lieshout N; MacWilliams A; Markey D; Paulson JN; Rangarajan S; Rasla J; Rayhan A; Rolland T; San-Miguel A; Shen Y; Sheykhkarimli D; Sheynkman GM; Simonovsky E; Taşan M; Tejeda A; Twizere J-C; Wang Y; Weatheritt RJ; Weile J; Xia Y; Yang X; Yeger-Lotem E; Zhong Q; Aloy P; Bader GD; De Las Rivas J; Gaudet S; Hao T; Rak J; Tavernier J; Tropepe V; Hill DE; Vidal M; Roth FP; Calderwood MA, A reference map of the human protein interactome, http://dx.doi.org/10.1101/605451

Skvortsova K; Bertrand S; Voronov D; Duckett PE; Ross SE; Magri MS; Maeso I; Weatheritt RJ; Skarmeta JLG; Arnone MI; Escriva H; Bogdanovic O, Active DNA demethylation of developmental cis-regulatory regions predates vertebrate origins, http://dx.doi.org/10.1101/2021.11.07.467601

Kjer-Hansen P; Pazaky K; Kavanagh D; King HE; O’Connell S; Santos-Rodriguez G; Grootveld AK; Vieira HGS; Berry S; Fernandez-Chamorro J; Weatheritt RJ, Alternative splicing fine-tunes modular protein interfaces to control protein localisation, http://dx.doi.org/10.1101/2025.09.30.679652

Holliday H; Khan A; Ehteda A; Nguyen H; Ross SE; Jayatilleke N; Gopalakrishnan A; Wang E; Sanguino YC; Kavanagh D; Guo X; Liu J; Lawrence D; Sun CX; Lehmann R; Ip CK; Lee A; Rangel-Sanchez L; Li W; Salomon R; Firestein R; Weatheritt RJ; Valdes-Mora F; Dinger ME; Phoenix TN; Mayoh C; Rayner BS; Tsoli M; Ziegler DS, Chromatin remodeling with combined FACT and BET inhibition disrupts oncogenic transcription in Diffuse Midline Glioma, http://dx.doi.org/10.1101/2024.06.06.597703

Santos-Rodriguez G; Voineagu I; Weatheritt RJ, Evolutionary dynamics of circular RNAs in primates, http://dx.doi.org/10.1101/2021.05.01.442284

Cleynen A; Ravindran A; Sethi A; Kumar B; Javaid T; Mahmud S; Woodward K; Vieira HGS; Änkö M-L; Weatheritt R; Eyras E; Robin S; Shirokikh N, High-Accuracy RNA Integrity Definition for Unbiased Transcriptome Comparisons with INDEGRA, http://dx.doi.org/10.1101/2024.12.12.627949

King HE; O’Connell S; Kavanagh D; Mason S; McCool C; Fernandez-Chamorro J; Chaffer C; Clark SJ; Vieira HGS; Sterne-Weiler T; Weatheritt RJ, Isoform-specific single-cell perturb-seq reveals distinct functions of alternative promoters in drug response, http://dx.doi.org/10.1101/2025.07.14.664827

Kavanagh D; Steel A; King HE; Vieira HGS; Kumar KR; Masle-Farquhar E; King C; Skvortsova K; Weatheritt R, Lineage-specific X chromosome inactivation escape and skew underlie sex-biased immune gene dosage and deleterious variant exposure, http://dx.doi.org/10.64898/2026.08.26.739472

Rodrigues DC; Mufteev M; Weatheritt RJ; Djuric U; Ha KCH; Ross PJ; Zaslavsky K; Mok RSF; Wei W; Piekna A; Byres L; Pasceri P; Diamandis P; Morris Q; Blencowe BJ; Ellis J, Shifts in Ribosome Engagement Impact Key Gene Sets in Neurodevelopment and Ubiquitination in Rett Syndrome, http://dx.doi.org/10.2139/ssrn.3364378

Prodic S; Cleynen A; Mahmud S; Srivastava A; Ravindran A; Kanchi M; Dastjerdi AH; Sethi AJ; Ćorović M; Jain R; Guarnacci M; Santos-Rodriguez G; Vieira G; Preiss T; Weatheritt RJ; Hayashi R; Burgio G; Martinez NM; Shirokikh NE; Eyras E, SWARM resolves nanopore signal interference between RNA modification types and reveals splicing-shaped pseudouridylation, http://dx.doi.org/10.64898/2025.12.18.695332

Santos-Rodriguez G; Srivastava A; Ravindran A; Oyelami F; Ip K; Gupta P; Villanueva J; King H; Grootveld A; Blackburn J; Gupta I; Vieira H; Shirokikh N; Eyras E; Weatheritt R, The conserved landscape of RNA modifications and transcript diversity across mammalian evolution, http://dx.doi.org/10.1101/2024.11.24.624934

Sterne-Weiler T; Weatheritt RJ; Best A; Ha KCH; Blencowe BJ, Whippet: an efficient method for the detection and quantification of alternative splicing reveals extensive transcriptomic complexity, http://dx.doi.org/10.1101/158519

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