Select Publications

Journal articles

Malfertheiner P; Camargo MC; El-Omar E; Liou JM; Peek R; Schulz C; Smith SI; Suerbaum S, 2023, 'Helicobacter pylori infection', Nature Reviews Disease Primers, 9,

Li P; Shuai P; Shen S; Zheng H; Sun P; Zhang R; Lan S; Lan Z; Jayawardana T; Yang Y; Zhao J; Liu Y; Chen X; El-Omar EM; Wan Z, 2023, 'Perturbations in gut microbiota composition in patients with polycystic ovary syndrome: a systematic review and meta-analysis', BMC Medicine, 21,

Omary MB; Leddin D; Metz G; Veitch AM; El-Omar EM; Macedo G; Perman ML, 2023, 'World Gastroenterology Organisation - Gut commentary series on digestive health and climate change.', Gut,

Strout N; Pasic L; Hicks C; Chua XY; Tashvighi N; Butler P; Liu Z; El-Assaad F; Holmes E; Susic D; Samaras K; Craig ME; Davis GK; Henry A; Ledger WL; El-Omar EM, 2023, 'The MothersBabies Study, an Australian Prospective Cohort Study Analyzing the Microbiome in the Preconception and Perinatal Period to Determine Risk of Adverse Pregnancy, Postpartum, and Child-Related Health Outcomes: Study Protocol', International Journal of Environmental Research and Public Health, 20,

Chen MJ; Chen PY; Fang YJ; Bair MJ; Chen CC; Chen CC; Yang TH; Lee JY; Yu CC; Kuo CC; Chiu MC; Chou CK; Chen CY; Hu WH; Tsai MH; Hsu YC; Shun CT; Luo JC; Lin JT; El-Omar EM; Wu MS; Liou JM, 2023, 'Molecular testing-guided therapy versus susceptibility testing-guided therapy in first-line and third-line Helicobacter pylori eradication: two multicentre, open-label, randomised controlled, non-inferiority trials', The Lancet Gastroenterology and Hepatology, 8, pp. 623 - 634,

Camilleri M; El-Omar EM, 2023, 'Ten reasons gastroenterologists and hepatologists should be treating obesity', Gut, 72, pp. 1033 - 1038,

Liou JM; Jiang XT; Chen CC; Luo JC; Bair MJ; Chen PY; Chou CK; Fang YJ; Chen MJ; Chen CC; Lee JY; Yang TH; Yu CC; Kuo CC; Chiu MC; Chen CY; Shun CT; Hu WH; Tsai MH; Hsu YC; Tseng CH; Chang CY; Lin JT; El-Omar EM; Wu MS; Wu CY; Lee YC; Tseng PH; Wu JY; Tai CM; Lee CT; Wang WL, 2023, 'Second-line levofloxacin-based quadruple therapy versus bismuth-based quadruple therapy for Helicobacter pylori eradication and long-term changes to the gut microbiota and antibiotic resistome: a multicentre, open-label, randomised controlled trial', The Lancet Gastroenterology and Hepatology, 8, pp. 228 - 241,

Gow ML; Chua XY; El-Omar E; Susic D; Henry A, 2023, 'Relationship between Diet Quality and Maternal Stool Microbiota in the MUMS Australian Pregnancy Cohort', Nutrients, 15,

Maloney S; Tebbutt N; Nikfarjam M; Samra J; Mendis S; Tie J; Christopherson L; Hayes S; Berthon-Jones N; Yim CHH; El-Omar E; Chantrill L, 2023, '1683TiP Trial in progress: NEO-adjuvant chemo-IMmunotherapy in PAnCreaTic cancer-NEO-IMPACT', Annals of Oncology, 34, pp. S922 - S922,


El-Omar EM, 2023, 'Future directions in the microbiome field: an editor’s perspective', eGastroenterology, 1, pp. e100003 - e100003,

Zhang F; Gia A; Chen G; Gong L; Behary J; Hold GL; Zekry A; Tang X; Sun Y; El-Omar E; Jiang XT, 2022, 'Critical Assessment of Whole Genome and Viral Enrichment Shotgun Metagenome on the Characterization of Stool Total Virome in Hepatocellular Carcinoma Patients', Viruses, 15,

Zekry A; El-Omar EM, 2022, 'A Tale of Two Fibers: A Liver Twist!', Gastroenterology, 163, pp. 1495 - 1497,

Pandey D; Szczesniak M; Maclean J; Yim HCH; Zhang F; Graham P; El-Omar EM; Wu P, 2022, 'Dysbiosis in Head and Neck Cancer: Determining Optimal Sampling Site for Oral Microbiome Collection', Pathogens, 11,

Chen J; Zeng P; Gong L; Zhang X; Ling Z; Bi K; Shi F; Wang K; Zhang Q; Jiang J; Zhang Y; Uede T; El-Omar EM; Diao H, 2022, 'Osteopontin Exacerbates High-Fat Diet-Induced Metabolic Disorders in a Microbiome-Dependent Manner', mBio, 13,

Hosseini-Giv N; Basas A; Hicks C; El-Omar E; El-Assaad F; Hosseini-Beheshti E, 2022, 'Bacterial extracellular vesicles and their novel therapeutic applications in health and cancer', Frontiers in Cellular and Infection Microbiology, 12,

O'Donnell M; Teasdale S; Chua X-Y; Hardman J; Wu N; Curtis J; Samaras K; Bolton P; Morris M; Shannon-Weickert C; Purves-Tyson T; El-Assaad F; Jiang X; Hold G; El-Omar E, 2022, 'The role of the microbiome in the metabolic health of people with schizophrenia and related psychoses: cross-sectional and pre-post lifestyle intervention analyses', Pathogens

Luo Z; Li M; Yang J; Li J; Zhang Y; Liu F; El-Omar E; Han L; Bian J; Gong L; Wang M, 2022, 'Ferulic acid attenuates high-fat diet-induced hypercholesterolemia by activating classic bile acid synthesis pathway', Frontiers in Nutrition, 9,

Gemikonakli G; Mach J; Zhang F; Bullock M; Tran T; El-Omar E; Hilmer SN, 2022, 'Polypharmacy with high Drug Burden Index (DBI) alters the gut microbiome overriding aging effects and is reversible with deprescribing.', The Journals of Gerontology Series A, 78,

Huang YE; Shen X; Yin D; Lan S; Lu Y; Zhou P; Ma L; Zhang Y; Sheng Y; Zhang Y; Li M; Hu F; Chen J; Li P; El-Omar EM; Zheng H, 2022, 'Disrupted establishment of anaerobe and facultative anaerobe balance in preterm infants with extrauterine growth restriction', Frontiers in Pediatrics, 10,

Malfertheiner P; Megraud F; Rokkas T; Gisbert JP; Liou JM; Schulz C; Gasbarrini A; Hunt RH; Leja M; O’Morain C; Rugge M; Suerbaum S; Tilg H; Sugano K; El-Omar EM; Agreus L; Bazzoli F; Bordin D; Loginov AS; Mario FD; Dinis-Ribeiro M; Engstrand L; Fallone C; Goh KL; Graham D; Kuipers EJ; Kupcinskas J; Lanas A; Machado JC; Mahachai V; Marshall BJ; Milosavljevic T; Moss SF; Park JY; Niv Y; Rajilic-Stojanovic M; Ristimaki A; Smith S; Tepes B; Wu CY; Zhou L, 2022, 'Management of Helicobacter pylori infection: the Maastricht VI/Florence consensus report', Gut, 71, pp. 1724 - 1762,

Sugano K; Spechler SJ; El-Omar EM; McColl KEL; Takubo K; Gotoda T; Fujishiro M; Iijima K; Inoue H; Kawai T; Kinoshita Y; Miwa H; Mukaisho KI; Murakami K; Seto Y; Tajiri H; Bhatia S; Choi MG; Fitzgerald RC; Fock KM; Goh KL; Ho KY; Mahachai V; O'Donovan M; Odze R; Peek R; Rugge M; Sharma P; Sollano JD; Vieth M; Wu J; Wu MS; Zou D; Kaminishi M; Malfertheiner P, 2022, 'Kyoto international consensus report on anatomy, pathophysiology and clinical significance of the gastro-oesophageal junction', Gut, 71, pp. 1488 - 1514,

Chen J; Zhao Y; Zhang F; Li J; Boland JA; Cheng NC; Liu K; Tiffen JC; Bertolino P; Bowen DG; Krueger A; Lisowski L; Alexander IE; Vadas MA; El-Omar E; Gamble JR; McCaughan GW, 2022, 'Liver-specific deletion of miR-181ab1 reduces liver tumour progression via upregulation of CBX7', Cellular and Molecular Life Sciences, 79,

Siau K; Kulkarni AV; El-Omar E, 2022, 'How to be a Good Reviewer for a Scientific Journal', Journal of Clinical and Experimental Hepatology, 12, pp. 1238 - 1243,

Mittinty MM; Lee JY; Walton DM; El-Omar EM; Elliott JM, 2022, 'Integrating the Gut Microbiome and Stress-Diathesis to Explore Post-Trauma Recovery: An Updated Model', Pathogens, 11,

Dong Y; Wu X; Han L; Bian J; He C; El-Omar E; Gong L; Wang M, 2022, 'The Potential Roles of Dietary Anthocyanins in Inhibiting Vascular Endothelial Cell Senescence and Preventing Cardiovascular Diseases', Nutrients, 14,

Li K; Xiao Y; Bian J; Han L; He C; El-Omar E; Gong L; Wang M, 2022, 'Ameliorative Effects of Gut Microbial Metabolite Urolithin A on Pancreatic Diseases', Nutrients, 14,

El-Omar EM, 2022, 'Genetic Predisposition for Helicobacter pylori Infection—The Jury Is Still Out!', Gastroenterology, 162, pp. 1591 - 1593,

Xiao Y; Li K; Bian J; Liu H; Zhai X; El-Omar E; Han L; Gong L; Wang M, 2022, 'Urolithin A Attenuates Diabetes-Associated Cognitive Impairment by Ameliorating Intestinal Barrier Dysfunction via N-glycan Biosynthesis Pathway', Molecular Nutrition and Food Research, 66,

Li Y; Zhang F; Zheng H; Kalasabail S; Hicks C; Fung KY; Preaudet A; Putoczki T; Beretov J; Millar EKA; El-Omar E; Jiang XT; Yim HCH, 2022, 'Fecal DNA Virome Is Associated with the Development of Colorectal Neoplasia in a Murine Model of Colorectal Cancer', Pathogens, 11,

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'Corrigendum: The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy(Front. Cell. Infect. Microbiol., (2022), 12, (646165), 10.3389/fcimb.2022.646165)', Frontiers in Cellular and Infection Microbiology, 12,

Zhang N; Wang Z; Lv J; Zhang S; Liu Y; Liu T; Li W; Gong L; Zhang X; El-Omar EM; Lu W, 2022, 'Characterization of Gut Microbiota and Exploration of Potential Predictive Model for Hepatocellular Carcinoma Microvascular Invasion', Frontiers in Medicine, 9,

Amorim N; McGovern E; Raposo A; Khatiwada S; Shen S; Koentgen S; Hold G; Behary J; El-Omar E; Zekry A, 2022, 'Refining a Protocol for Faecal Microbiota Engraftment in Animal Models After Successful Antibiotic-Induced Gut Decontamination', Frontiers in Medicine, 9,

Shaw S; Berry S; Thomson J; Murray GI; El-Omar E; Hold GL, 2022, 'Gut Mucosal Microbiome Signatures of Colorectal Cancer Differ According to BMI Status', Frontiers in Medicine, 8,

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy', Frontiers in Cellular and Infection Microbiology, 12,

Nitschke P; Lodge S; Kimhofer T; Masuda R; Bong SH; Hall D; Schäfer H; Spraul M; Pompe N; Diercks T; Bernardo-Seisdedos G; Mato JM; Millet O; Susic D; Henry A; El-Omar EM; Holmes E; Lindon JC; Nicholson JK; Wist J, 2022, 'J-Edited DIffusional Proton Nuclear Magnetic Resonance Spectroscopic Measurement of Glycoprotein and Supramolecular Phospholipid Biomarkers of Inflammation in Human Serum', Analytical Chemistry, 94, pp. 1333 - 1341,

Inan-Eroglu E; Huang BH; Ahmadi MN; Johnson N; El-Omar EM; Stamatakis E, 2022, 'Joint associations of adiposity and alcohol consumption with liver disease-related morbidity and mortality risk: findings from the UK Biobank', European Journal of Clinical Nutrition, 76, pp. 74 - 83,

Yan Z; Chen B; Yang Y; Yi X; Wei M; Ecklu-Mensah G; Buschmann MM; Liu H; Gao J; Liang W; Liu X; Yang J; Ma W; Liang Z; Wang F; Chen D; Wang L; Shi W; Stampfli MR; Li P; Gong S; Chen X; Shu W; El-Omar EM; Gilbert JA; Blaser MJ; Zhou H; Chen R; Wang Z, 2022, 'Multi-omics analyses of airway host–microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions', Nature Microbiology,

Behary J; Raposo AE; Amorim NML; Zheng H; Gong L; McGovern E; Chen J; Liu K; Beretov J; Theocharous C; Jackson MT; Seet-Lee J; McCaughan GW; El-Omar EM; Zekry A, 2021, 'Defining the temporal evolution of gut dysbiosis and inflammatory responses leading to hepatocellular carcinoma in Mdr2 −/− mouse model', BMC Microbiology, 21,

Behary J; Amorim N; Jiang XT; Raposo A; Gong L; McGovern E; Ibrahim R; Chu F; Stephens C; Jebeili H; Fragomeli V; Koay YC; Jackson M; O’Sullivan J; Weltman M; McCaughan G; El-Omar E; Zekry A, 2021, 'Gut microbiota impact on the peripheral immune response in non-alcoholic fatty liver disease related hepatocellular carcinoma', Nature Communications, 12,

Wands DIF; El-Omar EM; Hansen R, 2021, 'Helicobacter pylori: Getting to grips with the guidance', Frontline Gastroenterology, 12, pp. 650 - 655,

Hathi Z; Mettu S; Priya A; Athukoralalage S; Lam TN; Choudhury NR; Dutta NK; El-Omar EM; Gong L; Mohan G; Lin CSK, 2021, 'Methodological advances and challenges in probiotic bacteria production: Ongoing strategies and future perspectives', Biochemical Engineering Journal, 176,

Wu N; Mah C; Koentgen S; Zhang L; Grimm MC; El-Omar E; Hold GL, 2021, 'Inflammatory bowel disease and the gut microbiota', Proceedings of the Nutrition Society, 80, pp. 424 - 434,

Gong L; El-Omar EM, 2021, 'Application of molecular techniques in Helicobacter pylori detection: limitations and improvements', Helicobacter, 26,

Schupfer E; Pak SC; Wang S; Micalos PS; Jeffries T; Ooi SL; Golombick T; Harris G; El-Omar E, 2021, 'The effects and benefits of arabinoxylans on human gut microbiota – A narrative review', Food Bioscience, 43,

Kalasabail S; Engelman J; Zhang LY; El‐omar E; Yim HCH, 2021, 'A perspective on the role of microbiome for colorectal cancer treatment', Cancers, 13,

Yim HCH; El-Omar EM, 2021, 'Risk of physical activity and hepatobiliary diseases: East meets west', British Journal of Sports Medicine, 55, pp. 1003 - 1004,

Hasain Z; Raja Ali RA; Abdul Razak S; Azizan KA; El-Omar E; Razalli NH; Mokhtar NM, 2021, 'Gut Microbiota Signature Among Asian Post-gestational Diabetes Women Linked to Macronutrient Intakes and Metabolic Phenotypes', Frontiers in Microbiology, 12,

Alemao CA; Budden KF; Gomez HM; Rehman SF; Marshall JE; Shukla SD; Donovan C; Forster SC; Yang IA; Keely S; Mann ER; El Omar EM; Belz GT; Hansbro PM, 2021, 'Impact of diet and the bacterial microbiome on the mucous barrier and immune disorders', Allergy: European Journal of Allergy and Clinical Immunology, 76, pp. 714 - 734,

Chen CC; Liou JM; Lee YC; Hong TC; El-Omar EM; Wu MS, 2021, 'The interplay between Helicobacter pylori and gastrointestinal microbiota', Gut Microbes, 13, pp. 1 - 22,

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