Select Publications

Conference Papers

Rana P; Meijering E; Sowmya A; Song Y, 2021, 'Multi-label classification based on subcellular region-guided feature description for protein localisation', in Proceedings - International Symposium on Biomedical Imaging, IEEE, pp. 1929 - 1933, presented at 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 13 April 2021 - 16 April 2021, http://dx.doi.org/10.1109/ISBI48211.2021.9434145

Zhu Y; Meijering E, 2020, 'Neural Architecture Search for Microscopy Cell Segmentation', Lima, Peru, presented at Neural Architecture Search for Microscopy Cell Segmentation, Lima, Peru, 04 October 2020

Geurts SN; Oosterhof N; Kuil LE; Van Der Linde HC; Van Ham TJ; Meijering E, 2020, 'Automated Quantitative Analysis of Microglia in Bright-Field Images of Zebrafish', in Proceedings - International Symposium on Biomedical Imaging, pp. 522 - 525, http://dx.doi.org/10.1109/ISBI45749.2020.9098339

Smal I; Yao Y; Galjart N; Meijering E, 2019, 'Facilitating data association in particle tracking using autoencoding and score matching', in Proceedings - International Symposium on Biomedical Imaging, pp. 1523 - 1526, http://dx.doi.org/10.1109/ISBI.2019.8759418

Bergwerf H; Bechakra M; Smal I; Jongen JLM; Meijering E, 2019, 'Nerve fiber segmentation in bright-field microscopy images of skin biopsies using deep learning', in Proceedings - International Symposium on Biomedical Imaging, pp. 232 - 235, http://dx.doi.org/10.1109/ISBI.2019.8759504

Hofmann J; Mulleners O; Noordermeer T; van Leeuwen J; Bartulos O; Voskamp P; Braam S; Guttenberg Z; Danser J; Majoor-Krakauer D; van der Pluijm I; Meijering E; Essers J, 2018, 'Contraction Force Analysis Using Optical Imaging in Normal and Mybpc3-Mutated iPSC-Derived Cardiomyocytes Grown on Matrices With Tunable Stiffness', in CIRCULATION, LIPPINCOTT WILLIAMS & WILKINS, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000528619405270&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Smal I; Galjart N; Meijering E, 2018, 'Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing', in Proceedings - International Symposium on Biomedical Imaging, pp. 973 - 976, http://dx.doi.org/10.1109/ISBI.2018.8363733

Yao Y; Smal I; Meijering E, 2018, 'Deep neural networks for data association in particle tracking', in Proceedings - International Symposium on Biomedical Imaging, pp. 458 - 461, http://dx.doi.org/10.1109/ISBI.2018.8363615

Castilla C; Maska M; Sorokin DV; Meijering E; Ortiz-De-Solorzano C, 2018, 'Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks', in Proceedings - International Symposium on Biomedical Imaging, pp. 413 - 417, http://dx.doi.org/10.1109/ISBI.2018.8363605

Smal I; Basu S; Sayas L; Galjart N; Meijering E, 2017, 'Gaussian processes for trajectory analysis in microtubule tracking applications', in Proceedings - International Symposium on Biomedical Imaging, pp. 206 - 209, http://dx.doi.org/10.1109/ISBI.2017.7950502

Radojevic M; Meijering E, 2017, 'Neuron reconstruction from fluorescence microscopy images using sequential Monte Carlo estimation', in Proceedings - International Symposium on Biomedical Imaging, pp. 36 - 39, http://dx.doi.org/10.1109/ISBI.2017.7950462

Mata G; Radojevic M; Smal I; Morales M; Meijering E; Rubio J, 2016, 'Automatic detection of neurons in high-content microscope images using machine learning approaches', in Proceedings - International Symposium on Biomedical Imaging, pp. 330 - 333, http://dx.doi.org/10.1109/ISBI.2016.7493276

Smal I; Meijering E, 2016, 'Poisson point processes for solving stochastic inverse problems in fluorescence microscopy', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 326 - 338, http://dx.doi.org/10.1007/978-3-319-46604-0_24

Radojevie M; Smal I; Meijering E, 2015, 'Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms', in Proceedings - International Symposium on Biomedical Imaging, pp. 885 - 888, http://dx.doi.org/10.1109/ISBI.2015.7164012

Radojević M; Smal I; Niessen W; Meijering E, 2014, 'Fuzzy logic based detection of neuron bifurcations in microscopy images', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 1307 - 1310, http://dx.doi.org/10.1109/isbi.2014.6868117

Demirel O; Smal I; Niessen W; Meijering E; Sbalzarini IF, 2014, 'An adaptive distributed resampling algorithm with non-proportional allocation', in ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, pp. 1635 - 1639, http://dx.doi.org/10.1109/ICASSP.2014.6853875

Demirel O; Smal I; Niessen WJ; Meijering E; Sbalzarini IF, 2014, 'Piecewise constant sequential importance sampling for fast particle filtering', in IET Conference Publications, http://dx.doi.org/10.1049/cp.2014.0528

Demirel O; Smal I; Niessen WJ; Meijering E; Sbalzarini IF, 2014, 'PPF - A parallel particle filtering library', in IET Conference Publications, http://dx.doi.org/10.1049/cp.2014.0529

Plenge E; Poot DHJ; Niessen WJ; Meijering E, 2013, 'Super-resolution reconstruction using cross-scale self-similarity in multi-slice MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 123 - 130, http://dx.doi.org/10.1007/978-3-642-40760-4_16

Khmelinskii A; Plenge E; Kok P; Dzyubachyk O; Poot DHJ; Suidgeest E; Botha CP; Niessen WJ; Van Der Weerd L; Meijering E; Lelieveldt BPF, 2012, 'Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach', in Proceedings - International Symposium on Biomedical Imaging, pp. 1723 - 1726, http://dx.doi.org/10.1109/ISBI.2012.6235912

Plenge E; Poot DHJ; Bernsen M; Kotek G; Houston G; Wielopolski P; Van Der Weerd L; Niessen WJ; Meijering E, 2012, 'Super-resolution reconstruction in MRI: Better images faster?', in Progress in Biomedical Optics and Imaging - Proceedings of SPIE, http://dx.doi.org/10.1117/12.911235

Meijering E, 2012, 'RECONSTRUCTION AND QUANTIFICATION OF NEURONAL MORPHOLOGY', in 2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI), IEEE, Barcelona, SPAIN, pp. 1787 - 1787, presented at 9th IEEE International Symposium on Biomedical Imaging (ISBI) - From Nano to Macro, Barcelona, SPAIN, 02 May 2012 - 05 May 2012, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000312384100460&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Carranza N; Smal I; Dzyubachyk O; Niessen W; Meijering E, 2011, 'Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking', in Proceedings - International Symposium on Biomedical Imaging, pp. 1921 - 1924, http://dx.doi.org/10.1109/ISBI.2011.5872785

Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Quantitative comparison of tracking methods for motion analysis in tagged MRI', in Proceedings - International Symposium on Biomedical Imaging, pp. 345 - 348, http://dx.doi.org/10.1109/ISBI.2011.5872420

Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Trans-dimensional MCMC methods for fully automatic motion analysis in tagged MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 573 - 580, http://dx.doi.org/10.1007/978-3-642-23623-5_72

Smal I; Carranza-Herrezuelo N; Klein S; Niessen W; Meijering E, 2011, 'Trans-dimensional MCMC methods for fully automatic motion analysis in tagged MRI', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 573 - 580, http://dx.doi.org/10.1007/978-3-642-23623-5_72

Niessen W; Meijering E, 2010, '2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings: Welcome', in 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings, http://dx.doi.org/10.1109/ISBI.2010.5490277

Smal I; Niessen W; Meijering E, 2010, 'Particle filtering methods for motion analysis in tagged MRI', in 2010 7th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2010 - Proceedings, pp. 488 - 491, http://dx.doi.org/10.1109/ISBI.2010.5490302

Dzyubachyk O; Van Cappellen WA; Essers J; Niessen W; Meijering E, 2009, 'Energy minimization methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy', in Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009, pp. 1127 - 1130, http://dx.doi.org/10.1109/ISBI.2009.5193255

Smal I; Loog M; Niessen W; Meijering E, 2009, 'Quantitative comparison of spot detection methods in live-cell fluorescence microscopy imaging', in Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009, pp. 1178 - 1181, http://dx.doi.org/10.1109/ISBI.2009.5193268

Smal I; Grigoriev I; Akhmanova A; Niessen WJ; Meijering E, 2009, 'Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters', in Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, pp. 1012 - 1015, http://dx.doi.org/10.1109/IEMBS.2009.5333350

Dzyubachyk O; Jelier R; Lehner B; Niessen W; Meijering E, 2009, 'Model-based approach for tracking embryogenesis in Caenorhabditis elegans fluorescence microscopy data', in Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, pp. 5356 - 5359, http://dx.doi.org/10.1109/IEMBS.2009.5334046

Smal I; Niessen W; Meijering E, 2008, 'A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering', in 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI, pp. 264 - 267, http://dx.doi.org/10.1109/ISBI.2008.4540983

Dzyubachyk O; Niessen W; Meijering E, 2008, 'Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images', in 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings, ISBI, pp. 185 - 188, http://dx.doi.org/10.1109/ISBI.2008.4540963

Dzyubachyk O; Niessen W; Meijering E, 2007, 'A variational model for level-set based cell tracking in time-lapse fluorescence microscopy images', in 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 97 - 100, http://dx.doi.org/10.1109/ISBI.2007.356797

Smal I; Niessen W; Meijering E, 2007, 'Advanced particle filtering for multiple object tracking in dynamic fluorescence microscopy images', in 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 1048 - 1051, http://dx.doi.org/10.1109/ISBI.2007.357035

Smal I; Draegestein K; Galjart N; Niessen W; Meijering E, 2007, 'Rao-blackwellized marginal particle filtering for multiple object tracking in molecular bioimaging', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 110 - 121, http://dx.doi.org/10.1007/978-3-540-73273-0_10

Smal I; Niessen W; Meijering E, 2006, 'Particle filtering for multiple object tracking in molecular cell biology', in NSSPW - Nonlinear Statistical Signal Processing Workshop 2006, http://dx.doi.org/10.1109/NSSPW.2006.4378836

Kovačević J; Meijering E, 2006, '2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings: Welcome', in 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings

Smal I; Niessen W; Meijering E, 2006, 'Bayesian tracking for fluorescence microscopic imaging', in 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings, pp. 550 - 553

Meijering E; Jacob M; Sarria JCF; Steiner P; Hirling H; Unser M, 2004, 'Neurite tracing in fluorescence microscopy images using ridge filtering and graph searching: Principles and validation', in 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 1219 - 1222

Gratama Van Andel HAF; Meijering E; Van Der Lugt A; Vrooman HA; Stokking R, 2004, 'VAMPIRE: Improved method for automated center lumen line definition in atherosclerotic carotid arteries in CTA data', in Lecture Notes in Computer Science, pp. 525 - 532

Meijering E; Jacob M; Sarria JCF; Unser M, 2003, 'A novel approach to neurite tracing in fluorescence microscopy images', in Proceedings of the IASTED International Conference on Signal and Image Processing, pp. 491 - 495

Meijering E; Niessen W; Weickert J; Viergever M, 2002, 'Diffusion-enhanced visualization and quantification of vascular anomalies in three-dimensional rotational angiography: Results of an in-vitro evaluation', in Medical Image Analysis, pp. 215 - 233, http://dx.doi.org/10.1016/S1361-8415(02)00081-6

Meijering E; Niessen W; Weickert J; Viergever M, 2001, 'Evaluation of diffusion techniques for improved vessel visualization and quantification in three-dimensional rotational angiography', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 177 - 185, http://dx.doi.org/10.1007/3-540-45468-3_22

Baert SAM; Niessen WJ; Meijering EHW; Frangi AF; Viergever MA, 2000, 'Guide wire tracking in interventional radiology', in Lemke HU; Vannier MW; Inamura K; Farman AG; Doi K (eds.), CARS 2000: COMPUTER ASSISTED RADIOLOGY AND SURGERY, ELSEVIER SCIENCE BV, SAN FRANCISCO, CA, pp. 537 - 542, presented at 14th International Congress and Exhibition on Computer Assisted Radiology and Surgery (CARS 2000), SAN FRANCISCO, CA, 28 June 2000 - 01 July 2000, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000165685600090&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Meijering EHW, 2000, 'Spline interpolation in medical imaging: Comparison with other convolution-based approaches', in European Signal Processing Conference

Baert SAM; Niessen WJ; Meijering EHW; Frangi AF; Viergever MA, 2000, 'Guide wire tracking during endovascular interventions', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 727 - 734, http://dx.doi.org/10.1007/978-3-540-40899-4_75

Meijering EHW; Zuiderveld KJ; Niessen WJ; Viergever MA, 1999, 'Fast image registration technique for motion artifact reduction in DSA', in IEEE International Conference on Image Processing, pp. 435 - 439

Meijering EHW; Niessen WJ; Viergever MA, 1999, 'Piecewise polynomial kernels for image interpolation: A generalization of cubic convolution', in IEEE International Conference on Image Processing, pp. 647 - 651


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