By Professor Erik Meijering

Book Chapters

Javed S; Meijering E; Sowmya A; Razzak I, 2026, 'Multiscale Recursive Graph Transformer for Retinal Vessel Segmentation', in , pp. 176 - 187, http://dx.doi.org/10.1007/978-981-95-4100-3_13

Liu M; Lin Z; Chen W; Meijering E; Wang Y, 2024, 'DNeuroMAT: A Deep-Learning-Based Neuron Morphology Analysis Toolbox', in Methods in Molecular Biology, pp. 179 - 197, http://dx.doi.org/10.1007/978-1-0716-3969-6_12

Khan TM; Naqvi SS; Robles-Kelly A; Meijering E, 2023, 'Neural Network Compression by Joint Sparsity Promotion and Redundancy Reduction', in , pp. 612 - 623, http://dx.doi.org/10.1007/978-3-031-30105-6_51

Zhu J; Bolsterlee B; Chow BVY; Song Y; Meijering E, 2023, 'Uncertainty and Shape-Aware Continual Test-Time Adaptation for Cross-Domain Segmentation of Medical Images', in , pp. 659 - 669, http://dx.doi.org/10.1007/978-3-031-43898-1_63

Meijering E; Smal I; Dzyubachyk O; Olivo-Marin JC, 2022, 'Motion Tracking and Analysis', in Microscope Image Processing Second Edition, pp. 393 - 430, http://dx.doi.org/10.1016/B978-0-12-821049-9.00013-7

Wei W; Haidinger S; Lock J; Meijering E, 2021, 'Deep Representation Learning for Image-Based Cell Profiling', in Machine Learning in Medical Imaging, pp. 487 - 497, http://dx.doi.org/10.1007/978-3-030-87589-3_50

Hu Y; Meijering E; Xia Y; Song Y, 2021, 'Deformable Convolution and Semi-supervised Learning in Point Clouds for Aneurysm Classification and Segmentation', in Neural Information Processing, pp. 283 - 290, http://dx.doi.org/10.1007/978-3-030-92310-5_33

Yao Y; Smal I; Grigoriev I; Martin M; Akhmanova A; Meijering E, 2017, 'Automated analysis of intracellular dynamic processes', in Methods in Molecular Biology, pp. 209 - 228, http://dx.doi.org/10.1007/978-1-4939-6810-7_14

Meijering E; Dzyubachyk O; Smal I, 2012, 'Methods for cell and particle tracking', in Methods in Enzymology, pp. 183 - 200, http://dx.doi.org/10.1016/B978-0-12-391857-4.00009-4

Meijering E; Smal I; Dzyubachyk O; Olivo-Marin JC, 2008, 'Time-Lapse Imaging', in Microscope Image Processing, pp. 401 - 440, http://dx.doi.org/10.1016/B978-0-12-372578-3.00015-5

Meijering E; Smal I; Dzyubachyk O; Olivo‐Marin J, 2008, 'Chapter 15 Time‐Lapse Imaging', in Microscope Image Processing, Elsevier, pp. 401 - 440, http://dx.doi.org/10.1016/b978-0-12-372578-3.00015-5

Meijering E; Cappellen GV, 2007, 'Quantitative Biological Image Analysis', in Imaging Cellular and Molecular Biological Functions, Springer Nature, pp. 45 - 70, http://dx.doi.org/10.1007/978-3-540-71331-9_2

Journal articles

Kappan MM; Sandoval EB; Meijering E; Cruz F, 2026, 'MHDPose: Multi-hypothesis 3D human pose estimation using bidirectional Mamba diffusion models', Pattern Recognition, 180, http://dx.doi.org/10.1016/j.patcog.2026.114396

Hasan MM; Phu J; Wang H; Kalloniatis M; Sowmya A; Meijering E, 2026, 'Multiple attention based deep multimodal fusion network for glaucoma and neurodegenerative disease diagnosis', Scientific Reports, 16, http://dx.doi.org/10.1038/s41598-026-46855-6

Hasan MM; Phu J; Wang H; Kalloniatis M; Meijering E; Sowmya A, 2026, 'OCT-based optic neuropathy diagnosis using explainable and privacy-preserving machine learning', Scientific Reports, 16, http://dx.doi.org/10.1038/s41598-026-53687-x

Alam MS; Jackson M; Lord M; Meijering E, 2026, 'Cell segmentation in microscopy images using a SAM-based U-Net architecture and a novel dataset', Computer Methods and Programs in Biomedicine, 285, http://dx.doi.org/10.1016/j.cmpb.2026.109470

Bhaswara ID; Singh S; Sowmya A; Meijering E, 2026, 'A lightweight network for segmenting tree-like structures in medical images', Computerized Medical Imaging and Graphics, 133, http://dx.doi.org/10.1016/j.compmedimag.2026.102796

Zhu Z; Meijering E; Wang L, 2026, 'M2OTCA: Multiple-magnification optimal transport-based cross-attention learning for whole slide image classification', Medical Image Analysis, 112, http://dx.doi.org/10.1016/j.media.2026.104082

Fan L; Sowmya A; Meijering E; Yu Z; Ge Z; Song Y, 2026, 'Medical hierarchical image classification via dual-geometry image–text learning', Medical Image Analysis, 112, http://dx.doi.org/10.1016/j.media.2026.104120

Lv P; Wang Y; Liu M; Liu L; Wang J; Shen W; Cao B; Meijering E, 2026, 'Weak-Strong Consistency Learning via Collaborative Space Alignment for Semi-Supervised Medical Image Segmentation', IEEE Transactions on Emerging Topics in Computational Intelligence, 10, pp. 2498 - 2515, http://dx.doi.org/10.1109/TETCI.2026.3668678

Heng Z; Pagnucco M; Meijering E; Song Y, 2026, 'Curvi-Tracker: Curvilinear structure segmentation refinement by iterative tracking', Pattern Recognition, 173, pp. 112797, http://dx.doi.org/10.1016/j.patcog.2025.112797

Lv P; Wang Y; Liu M; Zhang Z; Ma Y; Liu L; Meijering E, 2026, 'CiSeg: Unsupervised Cross-Modality Adaptation for 3D Medical Image Segmentation via Causal Intervention', IEEE Transactions on Medical Imaging, 45, pp. 1293 - 1310, http://dx.doi.org/10.1109/TMI.2025.3620585

Paoloni J; Jackson M; Pandzic E; Alam MS; Meijering E; Yeow J; Lord MS, 2026, 'Decoding Endothelial Glycocalyx-Nanoparticle Interactions via a Systematic Polymeric Nanoparticle Library and High-Content Characterization', Small, 22, http://dx.doi.org/10.1002/smll.202514076

Kappan MM; Sandoval EB; Meijering E; Cruz F, 2026, 'A survey on deep learning for 2D and 3D human pose estimation', Artificial Intelligence Review, 59, http://dx.doi.org/10.1007/s10462-025-11430-4

Wang C; Liu M; Liu Q; Zhu Y; Chen X; Liu L; Wang Y; Meijering E; Wang J, 2026, 'DF-DiffVSR: Deformable Field-Driven Diffusion Model for Inter-Slice Continuity Enhancement in Medical Volume Super-Resolution', IEEE Journal of Biomedical and Health Informatics, http://dx.doi.org/10.1109/JBHI.2026.3682766

Wang J; Liu M; Shen W; Ding R; Wang Y; Meijering E, 2026, 'EPDiff: Erasure Perception Diffusion Model for Unsupervised Anomaly Detection in Preoperative Multimodal Images', IEEE Transactions on Medical Imaging, 45, pp. 379 - 390, http://dx.doi.org/10.1109/TMI.2025.3597545

Rahaman MM; Millar EKA; Meijering E, 2026, 'Leveraging Vision-Language Embeddings for Zero-Shot Learning in Histopathology Images', IEEE Journal of Biomedical and Health Informatics, 30, pp. 539 - 550, http://dx.doi.org/10.1109/JBHI.2025.3584802

Zhao X; Liao Q; Wang D; Meijering E; Brosnahan C; Keeling S; Tian R; Li W; Sutherland M; Kang J, 2026, 'Multimodal animal health monitoring in extensive livestock production systems', Frontiers in Veterinary Science, 13, http://dx.doi.org/10.3389/fvets.2026.1832869

Wang J; Ma Y; Liang B; Chen X; Liu M; Wang Y; Meijering E, 2026, 'Surface Mesh Reconstruction From Medical Images via Enrichment Feature Learning and Mesh Contour Loss', IEEE Transactions on Medical Robotics and Bionics, 8, pp. 232 - 243, http://dx.doi.org/10.1109/TMRB.2026.3654256

Mohammed F; Meredith T; Adams H; Pomeroy A; Moran TP; Barbieri S; Meijering E; Roy DA; Kovacic JC; Hayward CS; Muller DWM; Feneley MP; Namasivayam M, 2026, '26-A-15088-ACC CLASSIFICATION OF AORTIC STENOSIS SEVERITY USING AUTOMATED LEAFLET TRACKING: INTERNAL AND EXTERNAL VALIDATION', Journal of the American College of Cardiology, 87, pp. a907, http://dx.doi.org/10.1016/j.jacc.2026.02.2238

Khan TM; Lin D; Iqbal S; Meijering E, 2025, 'A novel approach to skin lesion segmentation using transformer attention and focal modulation', Engineering Applications of Artificial Intelligence, 162, http://dx.doi.org/10.1016/j.engappai.2025.112603

Meredith T; Mohammed F; Pomeroy A; Barbieri S; Meijering E; Jorm L; Roy D; Hayward C; Kovacic JC; Muller DWM; Feneley MP; Namasivayam M, 2025, 'Aortic valve leaflet motion for diagnosis and classification of aortic stenosis using single view echocardiography', Journal of Cardiovascular Imaging, 33, http://dx.doi.org/10.1186/s44348-025-00051-8

Gunawan I; Kohane FV; Dey M; Nguyen K; Zheng Y; Neumann DP; Vafaee F; Meijering E; Lock JG, 2025, 'Extensible Immunofluorescence (ExIF) accessibly generates high-plexity datasets by integrating standard 4-plex imaging data', Nature Communications, 16, http://dx.doi.org/10.1038/s41467-025-59592-7

Alam MS; Meijering E; Wang D; Sowmya A, 2025, 'Multiscale attention generative adversarial networks for lesion synthesis in chest X-ray images', Scientific Reports, 15, http://dx.doi.org/10.1038/s41598-025-26628-3

Hasan MM; Phu J; Wang H; Sowmya A; Kalloniatis M; Meijering E, 2025, 'OCT-based diagnosis of glaucoma and glaucoma stages using explainable machine learning', Scientific Reports, 15, http://dx.doi.org/10.1038/s41598-025-87219-w

Hasan MM; Phu J; Wang H; Sowmya A; Meijering E; Kalloniatis M, 2025, 'Predicting visual field global and local parameters from OCT measurements using explainable machine learning', Scientific Reports, 15, http://dx.doi.org/10.1038/s41598-025-89557-1

Mondol RK; Millar EKA; Graham PH; Browne L; Sowmya A; Meijering E, 2025, 'GRAPHITE: Graph-based interpretable tissue examination for enhanced explainability in breast cancer histopathology', Computers in Biology and Medicine, 197, http://dx.doi.org/10.1016/j.compbiomed.2025.111106

Rahaman MM; Millar EKA; Meijering E, 2025, 'Generalized deep learning for histopathology image classification using supervised contrastive learning', Journal of Advanced Research, 75, pp. 389 - 404, http://dx.doi.org/10.1016/j.jare.2024.11.013

Hu Y; Meijering E; Song Y, 2025, 'Multiscope topology learning with conditional updating for airway segmentation', Pattern Analysis and Applications, 28, pp. 104 - 104, http://dx.doi.org/10.1007/s10044-025-01480-3

Imani M; Buratto J; Dao T; Meijering E; Vogrin S; Kwok T; Orwoll E; Cawthon P; Duque G, 2025, 'Deep Learning Technique for Automatic Segmentation of Proximal Hip Musculoskeletal Tissues From CT Scan Images: A MrOS Study', Journal of Cachexia Sarcopenia and Muscle, 16, http://dx.doi.org/10.1002/jcsm.13728

Zhu J; Bolsterlee B; Song Y; Meijering E, 2025, 'Improving cross-domain generalizability of medical image segmentation using uncertainty and shape-aware continual test-time domain adaptation', Medical Image Analysis, 101, pp. 103422, http://dx.doi.org/10.1016/j.media.2024.103422

Xu Y; Khan TM; Song Y; Meijering E, 2025, 'Edge deep learning in computer vision and medical diagnostics: a comprehensive survey', Artificial Intelligence Review, 58, http://dx.doi.org/10.1007/s10462-024-11033-5

Meredith T; Mohammed F; Pomeroy A; Barbieri S; Meijering E; Jorm L; Roy D; Kovacic J; Feneley M; Hayward C; Muller D; Namasivayam M, 2025, 'Machine learning cluster analysis identifies increased 12-month mortality risk in transcatheter aortic valve replacement recipients', Frontiers in Cardiovascular Medicine, 12, pp. 1444658, http://dx.doi.org/10.3389/fcvm.2025.1444658

Iqbal S; Khan TM; Naqvi SS; Naveed A; Meijering E, 2025, 'TBConvL-Net: A hybrid deep learning architecture for robust medical image segmentation', Pattern Recognition, 158, http://dx.doi.org/10.1016/j.patcog.2024.111028

Liu Q; Zhu Y; Liu M; Yao Z; Wang Y; Meijering E, 2025, 'MBUNeXt: Multibranch Encoder Aggregation Network Based on Layer-Fusion Strategy for Multimodal Brain Tumor Segmentation', IEEE Transactions on Neural Networks and Learning Systems, 36, pp. 19996 - 20008, http://dx.doi.org/10.1109/TNNLS.2025.3593297

Shen W; Wang Y; Liu M; Wang J; Ding R; Zhang Z; Meijering E, 2025, 'Multiview Integration Network for Multitask Robotic Surgical Scene Analysis', IEEE Transactions on Instrumentation and Measurement, 74, http://dx.doi.org/10.1109/TIM.2025.3568524

Imani M; Borda MG; Vogrin S; Meijering E; Aarsland D; Duque G, 2025, 'Using Deep Learning to Perform Automatic Quantitative Measurement of Masseter and Tongue Muscles in Persons With Dementia: Cross-Sectional Study', Jmir Aging, 8, http://dx.doi.org/10.2196/63686

Meredith T; Mohammed F; Pomeroy A; Barbieri S; Meijering E; Jorm L; Roy D; Kovacic J; Muller D; Feneley M; Namasivayam M, 2025, 'TCT-593 Aortic Valve Leaflet Motion for Diagnosis and Classification of Aortic Stenosis Using Single View Echocardiography', Journal of the American College of Cardiology, 86, pp. b258, http://dx.doi.org/10.1016/j.jacc.2025.09.733

Manubens-Gil L; Zhou Z; Chen H; Ramanathan A; Liu X; Liu Y; Bria A; Gillette T; Ruan Z; Yang J; Radojević M; Zhao T; Cheng L; Qu L; Liu S; Bouchard KE; Gu L; Cai W; Ji S; Roysam B; Wang CW; Yu H; Sironi A; Iascone DM; Zhou J; Bas E; Conde-Sousa E; Aguiar P; Li X; Li Y; Nanda S; Wang Y; Muresan L; Fua P; Ye B; He HY; Staiger JF; Peter M; Cox DN; Simonneau M; Oberlaender M; Jefferis G; Ito K; Gonzalez-Bellido P; Kim J; Rubel E; Cline HT; Zeng H; Nern A; Chiang AS; Yao J; Roskams J; Livesey R; Stevens J; Liu T; Dang C; Guo Y; Zhong N; Tourassi G; Hill S; Hawrylycz M; Koch C; Meijering E; Ascoli GA; Peng H, 2024, 'Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets (Nature Methods, (2023), 20, 6, (824-835), 10.1038/s41592-023-01848-5)', Nature Methods, 21, pp. 1959, http://dx.doi.org/10.1038/s41592-024-02395-3

Tchetchenian A; Zekelman L; Chen Y; Rushmore J; Zhang F; Yeterian EH; Makris N; Rathi Y; Meijering E; Song Y; O'Donnell LJ, 2024, 'Deep multimodal saliency parcellation of cerebellar pathways: Linking microstructure and individual function through explainable multitask learning', Human Brain Mapping, 45, pp. e70008, http://dx.doi.org/10.1002/hbm.70008

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