By Professor Fabio Luciani

Journal articles

Luciani F; Valensin S; Vescovini R; Sansoni P; Fagnoni F; Franceschi C; Bonafè M; Turchetti G, 2001, 'A stochastic model for CD8⁺ T cell dynamics in human immunosenescence: Implications for survival and longevity', Journal of Theoretical Biology, 213, pp. 587 - 597, http://dx.doi.org/10.1006/jtbi.2001.2433

Luciani F; Turchetti G; Franceschi C; Valensin S, 2001, 'A Mathematical Model for the Immunosenescence', Rivista di Biologia - Biology Forum, 94, pp. 305 - 318

Conference Papers

Shek D; Gao B; Mahajan H; Nagrial A; Carlino M; Luciani F; Read S; Ahlenstiel G, 2023, '177 Exploring the relationship between tumour heterogeneity and response to immunotherapy in malignant pleural mesothelioma', in Regular and Young Investigator Award Abstracts, BMJ Publishing Group Ltd, presented at SITC 38th Annual Meeting (SITC 2023) Abstracts, http://dx.doi.org/10.1136/jitc-2023-sitc2023.0177

Zhao Y; Keoshkerian E; Li H; An H; Bull RA; Luciani F; Lloyd AR, 2021, 'Functional characterisation and transcriptomic analysis of antigen-specific CD8 T memory stem cells (TSCM) generated from clonally expanded single TSCM cells in vitro', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, pp. 47 - 47, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000753366400123&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Louie R; Cai C; Balraj V; Singh M; Jackson K; Deveson I; Ferguson J; Amos T; Gowrishankar K; Bishop D; Blyth E; Gottlieb D; Micklethwaite K; Luciani F, 2021, 'Single cell multi-omics identifies evolving phenotypes of CAR CD19 and endogenous T cell clones', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, pp. 412 - 412, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000753366402197&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Adikari TN; Singh M; Munier ML; Louie R; Samir J; Balraj V; Cai C; Hardy MY; John JR; Reid H; Kelleher AD; Din JAT; Goodnow C; Luciani F, 2021, 'Single cell RNA sequencing of gluten-specific CD4+T cells reveals a novel gene expression pattern with NK-like cytotoxicity', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, pp. 96 - 96, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000753366400285&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Singh M; Jackson K; Wang JJ; Schofield P; Field M; Peters T; Luciani F; Gordon T; Goodnow C; Reed JH, 2019, '241 Single cell genomics of self-reactive B cells reveals the evolution from benign to pathogenic autoantibody and strategies for early diagnosis and personalised treatment', in Abstracts, Lupus Foundation of America, presented at 13th International Congress on Systemic Lupus Erythematosus (LUPUS 2019), San Francisco, California, USA, April 5–8, 2019, Abstract Presentations, http://dx.doi.org/10.1136/lupus-2019-lsm.241

Horton JL; Kim KW; Pang CN; Jain K; Leung P; Isaacs SR; Bull RA; Luciani F; Wilkins MR; Lipkin WI; Rawlinson WD; Briese T; Craig ME, 2017, 'Virome-Capture Sequencing of the Gut and Plasma Virome in Children with Islet Autoimmunity', in DIABETES, AMER DIABETES ASSOC, pp. LB51 - LB52, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000463087200190&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Cunningham EB; Hajarizadeh B; Amin J; Bretana NA; Luciani F; Degenhardt L; Larney S; Dore GJ; Lloyd AR; Grebely J, 2017, 'Injecting risk behaviours among people with a history of injecting drug use in an Australian prison setting, 2005-2014: the HITS-p study', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, NETHERLANDS, Amsterdam, pp. S488 - S488, presented at International Liver Congress / 52nd Annual Meeting of the European-Association-for-the-Study-of-the-Liver, NETHERLANDS, Amsterdam, 19 April 2017 - 23 April 2017, http://dx.doi.org/10.1016/S0168-8278(17)31370-3

Cunningham EB; Luciani F; Hajarizadeh B; Betz-Stablein B; Bretana NA; Teutsch S; Dore GJ; Grebely J; Lloyd AR, 2016, 'STABLE INCIDENCE OF HEPATITIS C VIRUS INFECTION AMONG PEOPLE WITH A HISTORY OF INJECTING DRUG USE IN AN AUSTRALIAN PRISON SETTING, 2005-2014: THE HITS-P STUDY', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, SPAIN, Barcelona, pp. S614 - S614, presented at EASL International Liver Congress, SPAIN, Barcelona, 13 April 2016 - 17 April 2016, http://dx.doi.org/10.1016/S0168-8278(16)01138-7

Leung P; Bull R; Lloyd A; Luciani F, 2015, 'Co-evolving mutations in hepatitis C virus in the context of immune escape against neutralising antibody responses - A bioinformatic workflow for the analysis of co-evolving mutations in viral genomes', in International Workshop on Artificial Immune Systems, AIS 2015/ICSI3 2015 - Systems Immunology, Immunoinformatics and Immune-computation: Immunology without Borders, Proceedings, Sicily, Italy, presented at 2015 International Workshop on Artificial Immune Systems (AIS), Sicily, Italy, 17 July 2015 - 18 July 2015, http://dx.doi.org/10.1109/AISW.2015.7469236

1. D. Bradshaw, B. Jacka, F. Lamoury, T.L. Applegate, G.J. Dore, I. Down, G. Matthews, R. Sacks-Davis, M. Hellard, F. Luciani, M. Danta, J. Sasadeusz , 2014, 'A novel method comparing sexual networks with the HCV phylogeny in HIV-positive men who have sex with men (MSM) with acute HCV infection identifies two potential intervention targets for permucosally transmitted HCV', Boston, presented at AASLD, Boston, 05 November 2014 - 09 November 2014

Bradshaw D; Jacka B; Sacks-Davis R; Lamoury F; Applegate T; Dore G; Down I; Luciani F; Hellard M; Sasadeusz J; Danta M; Matthews G, 2014, 'A novel method comparing sexual networks with the HCV phylogeny in HIV-positive MSM with acute HCV infection identifies two potential intervention targets for permucosally transmitted HCV in Australia', in HIV MEDICINE, WILEY-BLACKWELL, pp. 136 - 136

Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N, 2014, 'Viral quasispecies assembly via maximal clique enumeration', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 309 - 310, http://dx.doi.org/10.1007/978-3-319-05269-4_25

Bradshaw D; Jacka B; Sacks-Davis R; Lamoury F; Applegate TL; Dore GJ; Down I; Luciani F; Hellard M; Sasadeusz J; Danta M; Matthews G, 2013, 'A novel method comparing sexual networks with the HCV phylogeny in HIV-positive men who have sex with men (MSM) with acute HCV infection identifies two potential intervention targets for permucosally-transmitted HCV', in HEPATOLOGY, WILEY-BLACKWELL, DC, Washington, pp. 1307A - 1307A, presented at 64th Annual Meeting and Postgraduate Course of the American-Association-for-the-Study-of-Liver-Diseases, DC, Washington, 01 November 2013 - 05 November 2013

Boelen L; Bull RA; Teutsch S; Lloyd AR; Luciani F, 2013, 'MOLECULAR EPIDEMIOLOGY AND SOCIAL NETWORK ANALYSIS TO TRACK HCV TRANSMISSION IN HIGH-RISK COMMUNITIES: INJECTING DRUG USERS IN PRISONS OF NEW SOUTH WALES, AUSTRALIA', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, NETHERLANDS, Amsterdam, pp. S193 - S193, presented at International Liver Congress / 48th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), NETHERLANDS, Amsterdam, 24 April 2013 - 28 April 2013, http://dx.doi.org/10.1016/S0168-8278(13)60473-0

Luciani F; Bull RA; Cameron B; Gaudieri S; Nguyen N; Yuen D; White PA; Purcell DFJ; Foung S; Lloyd AR, 2012, 'IMMUNE RESPONSES AGAINST FOUNDER HEPATITIS C VIRUSES IN ACUTE ASYMPTOMATIC SUBJECTS', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, SPAIN, Barcelona, pp. S312 - S312, presented at 47th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), SPAIN, Barcelona, 18 April 2012 - 22 April 2012, http://dx.doi.org/10.1016/S0168-8278(12)60809-5

Luciani F; McElroy K ; J Hui ; S Rice ; Thomas T , 2011, '13. K McElroy, F Luciani, J Hui, S Rice, T Thomas Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification. 2011 BMC Bioinformatics 12 (Suppl 11), A2', Vienna (Austria), presented at Highlights from the Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Vienna (Austria), 11 July 2011 - 15 July 2011

Luciani F; Bull R; McElroy K ; Pham S ; Cameron B ; Chopra A ; Gaudieri S ; Cooper D ; Lloyd A ; White P , 2011, 'EVOLUTIONARY DYNAMICS OF HEPATITIS C VIRUS DURING VERY EARLY INFECTIONS: VIROLOGICAL AND IMMUNOLOGICAL INSIGHTS', Berlin, presented at International Liver Conference 2011, Berlin, 30 March 2011 - 01 April 2011

Luciani F; Bull R; Mcelroy K; Pham S; Cameron B; Chopra A; Gaudieri S; Cooper D; Lloyd A; White P, 2011, 'EVOLUTIONARY DYNAMICS OF HEPATITIS C VIRUS DURING VERY EARLY INFECTIONS: VIROLOGICAL AND IMMUNOLOGICAL INSIGHTS', in JOURNAL OF HEPATOLOGY, ELSEVIER, GERMANY, Berlin, pp. S18 - S18, presented at 46th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), GERMANY, Berlin, 30 March 2011 - 03 April 2011, http://dx.doi.org/10.1016/S0168-8278(11)60040-8

Or-guil M; Luciani F; Carneiro J, 2004, 'Clonal expansion of cytotoxic T cell clones: the role of the Immunoproteasome', in Proceedings of the 5th Symposium on Mathematical and Computational Biology, E-papers Servicos Editoriais, Brazil, presented at 5th Symposium on Mathematical and Computational Biology

Turchetti G; Luciani F; Mariani L, 2002, 'Environmental randomness and survival probability', in Mathematical Modelling in Biology and Medicine, Co., Bologna, Italy, presented at 5th ESMTB Conference, Milano, Italy, 02 July 2002 - 06 July 2002

MARIANI L; TURCHETTI G; LUCIANI F, 2002, 'STOCHASTIC MODELS OF IMMUNE SYSTEM AGING', in Modelling Biomedical Signals, WORLD SCIENTIFIC, presented at Modelling Biomedical Signals, http://dx.doi.org/10.1142/9789812778055_0007

Conference Posters

Cunningham EB; Hajarizadeh B; Amin J; Betz-Stablein B; Dore GJ; Luciani F; Teutsch S; Bretana NA; Dolan K; Lloyd AR; Grebely J, 2018, 'A161 ONGOING INCIDENT HEPATITIC C VIRUS INFECTION AMONG PEOPLE WITH A HISTORY OF INJECTING DRUG USE IN AN AUSTRALIAN PRISON SETTING', Vol. 1, pp. 278 - 280, http://dx.doi.org/10.1093/jcag/gwy008.162

Conference Presentations

Rodrigo C; Riaz N; Adikari T; Sigera C; Rajapakse S; Fernando D; Weeratunga P; Fink K; Bull R; Luciani F; Lloyd A, 2019, 'A single nested PCR method for full length dengue virus genome amplification', presented at 7th European Congress of Virology, Rotterdam, The Netherlands

Rodrigo C; Leung P; Bull R; Lloyd A; Luciani F, 2019, 'Using networks to study epistatic interactions of HCV', presented at 14th Scientific Workship of the Australian Center for HIV and Hepatitis Virology Research, Canungra, Australia

Abayasingam A; Leung P; Luciani F; Bull R; Lloyd A; Rodrigo C, 2018, 'Challenges in characterizing hepatitis C virus founder variants with deep sequencing', presented at 13th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2018, 'Genetic variability of Hepatitis C quasi-species in early infection', presented at Global Hepatitis Summit, Toronto, Canada

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2018, 'Host IFNλ3 genotype and viral genotype are key determinants of within-host HCV genomic variation in early infection', presented at 13th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Yarra Valley, Australia

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2017, 'Establishment of InC3 viral sequence repository and its applications', presented at 12th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Barossa Valley, Australia

Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2016, 'Bayesian evolutionary analysis of hepatitis C epidemic in Australia and North America in 20th century', presented at Australasian Viral Hepatitis Conference, GoldCoast, Australia

Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2016, 'Bayesian evolutionary analysis of hepatitis C epidemic in Australia and North America in 20th century', presented at International conference in Systems Biology, Barcelona, Spain

Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2016, 'Broadly neutralizing antibodies against hepatitis C envelope; using a network approach to understand co-evolution of critical residues', presented at International conference in Systems Biology, Barcelona, Spain

Rodrigo C; Bretana N; Luciani F; Lloyd A; Bull R, 2016, 'Examining past and future hepatitis C virus epidemic trends in the era of directly acting antivirals', presented at Australian Society of Microbiology annual scientific meeting, Perth, Australia

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2016, 'Molecular epidemiology of full length hepatitis C virus genomes among injecting drug users with recent infection: The InC3 study', presented at 5th International Symposium on Hepatitis Care in Substance Users, Oslo, Norway

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2016, 'Trends of Hepatitis C virus infections in North America and Australia in 20th century; back projections from molecular epidemiology', presented at 5th International Symposium on Hepatitis Care in Substance Users, Oslo, Norway

Leung P; Walker M; Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2015, 'A network approach for the identification of co-evolving mutations in Hepatitis C Virus (HCV) in the context of immune escape against neutralizing antibody responses', presented at COMBINE Student Symposium, Sydney, Australia

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2015, 'Global molecular epidemiology of acute hepatitis infection via phylogenetic analysis of full length genomes across nine international cohorts', presented at 11th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Hunter Valley, Australia

Leung P; Walker M; Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2015, 'Identification of co-evolving mutations of the Hepatitis C virus in the context of immune escape against neutralizing antibody responses using a bioinformatics workflow', presented at 8th Australasian virology society meeting, Hunter Valley, Australia

Eltahla A; Rodrigo C; Bull R; Luciani F; Lloyd A, 2015, 'Natural prevalence of HCV resistance associated variants in treatment naïve patients across six genotypes', presented at 11th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Hunter Valley, Australia

Walker M; Leung P; Eltahla A; Rodrigo C; Luciani F; Foung S; Lloyd A; Bull R, 2015, 'Understanding the timing, breadth and potency of neutralising antibody responses against transmitted/founders', presented at 11th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Hunter Valley, Australia

Conference Abstracts

Singh M; Jackson K; Wang JJ; Schofield P; Field M; Rischmueller M; Luciani F; Gordon T; Goodnow C; Reed J, 2020, 'GENOMIC ANALYSIS OF B CELLS PRODUCING PATHOGENIC RHEUMATOID FACTORS', in INTERNAL MEDICINE JOURNAL, WILEY, Vol. 50, pp. 47 - 47, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000553988700131&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Budzinska MA; Tu T; D'avigdo WMH; Mccaughan GW; Luciani F; Shackel NA, 2016, 'Accumulation of deleterious passenger mutations is associated with the progression of hepatocellular carcinoma', in PLoS ONE, Vol. 11, http://dx.doi.org/10.1371/journal.pone.0162586

Budzinska MA; Tu T; Luciani F; Shackel NA, 2015, 'Deleterious passenger mutations as a marker for progression towards liver cancer', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 30, pp. 4 - 5, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000364505900010&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Preprints

Young C; Singh M; Jackson KJL; Field MA; Peters TJ; Angioletti-Uberti S; Frenkel D; Ravishankar S; Gupta M; Wang JJ; Agapiou D; Faulks ML; Al-Eryani G; Luciani F; Gordon TP; Reed JH; Danta M; Carr A; Kelleher AD; Dore GJ; Matthews G; Brink R; Bull RA; Suan D; Goodnow CC, 2024, Self-reactive B cells traverse a perfect storm of somatic mutagenesis to cause a virus-induced autoimmune disease, , http://dx.doi.org/10.1101/2024.01.07.574561

Ghita L; Yao Z; Xie Y; Duran V; Cagirici HB; Samir J; Osman I; Agudelo Rojas OL; Sanz AM; Sahoo MK; Robinson ML; Gelvez RM; Bueno N; Luciani F; Pinsky BA; Montoya JG; Estupiñan Cardenas MI; Villar Centeno LA; Rojas Garrido EM; Rosso F; Quake SR; Zanini F; Einav S, 2022, Global and cell type-specific immunological hallmarks of severe dengue progression, , http://dx.doi.org/10.1101/2022.12.11.519930

Louie R; Cai C; Singh M; Deveson I; Ferguson J; Amos T; McGuire H; Samir J; Gowrishankar K; Adikari T; Balderas R; Bishop D; Gottlieb D; Blyth E; Micklethwaite K; Luciani F, 2022, CAR+ and CAR- T cells differentiate into an NK-like subset that is associated with increased inflammatory cytokines following infusion, , http://dx.doi.org/10.21203/rs.3.rs-1495587/v1

Louie RHY; Cai C; Singh M; Deveson I; Ferguson J; Amos T; McGuire HM; Samir J; Gowrishankar K; Adikari T; Balderas R; Bishop D; Gottlieb D; Blyth E; Micklethwaite K; Luciani F, 2022, CAR⁺ and CAR^- T cells differentiate into an NK-like subset that is associated with increased inflammatory cytokines following infusion, , http://dx.doi.org/10.1101/2022.03.29.22273013

Cai C; Samir J; Pirozyan M; Adikari T; Gupta M; Leung P; Hughes B; Van der Byl W; Rizzetto S; Elthala A; Keoshkerian E; Palgen J-L; Peters T; Nguyen T; Louie R; Kedzierska K; Gaudieri S; Bull R; Lloyd A; Luciani F, 2021, Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8⁺ T cells, , http://dx.doi.org/10.1101/2021.09.09.459584

Tikoo S; Jain R; Martinez B; Song R; Wielscher M; Rizzetto S; Shaw LE; Mitchell AJ; Torres-Pacheco ME; Luciani F; Farlik M; Wong JJL; Jung S; Fraser ST; Weninger W, 2021, A distinct CD115^-erythro-myeloid precursor present at the maternal-embryonic interface and in the bone marrow of adult mice, , http://dx.doi.org/10.1101/2021.07.24.453629

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