Select Publications

Journal articles

Gulliver EL; Young RB; Chonwerawong M; D'Adamo GL; Thomason T; Widdop JT; Rutten EL; Rossetto Marcelino V; Bryant RV; Costello SP; O'Brien CL; Hold GL; Giles EM; Forster SC, 2022, 'Review article: the future of microbiome-based therapeutics', Alimentary Pharmacology and Therapeutics, vol. 56, pp. 192 - 208,

Breugelmans T; Oosterlinck B; Arras W; Ceuleers H; De Man J; Hold GL; De Winter BY; Smet A, 2022, 'The role of mucins in gastrointestinal barrier function during health and disease', The Lancet Gastroenterology and Hepatology, vol. 7, pp. 455 - 471,

James KR; Elmentaite R; Teichmann SA; Hold GL, 2022, 'Redefining intestinal immunity with single-cell transcriptomics', Mucosal Immunology, vol. 15, pp. 531 - 541,

James KR; Elmentaite R; Teichmann SA; Hold GL, 2022, 'Correction to: Redefining intestinal immunity with single-cell transcriptomics (Mucosal Immunology, (2021), 10.1038/s41385-021-00470-y)', Mucosal Immunology, vol. 15, pp. 526,

Amorim N; McGovern E; Raposo A; Khatiwada S; Shen S; Koentgen S; Hold G; Behary J; El-Omar E; Zekry A, 2022, 'Refining a Protocol for Faecal Microbiota Engraftment in Animal Models After Successful Antibiotic-Induced Gut Decontamination', Frontiers in Medicine, vol. 9,

Shaw S; Berry S; Thomson J; Murray GI; El-Omar E; Hold GL, 2022, 'Gut Mucosal Microbiome Signatures of Colorectal Cancer Differ According to BMI Status', Frontiers in Medicine, vol. 8, pp. 800566,

Smet A; Kupcinskas J; Link A; Hold GL; Bornschein J, 2022, 'The Role of Microbiota in Gastrointestinal Cancer and Cancer Treatment: Chance or Curse?', Cellular and Molecular Gastroenterology and Hepatology, vol. 13, pp. 857 - 874,

Wu N; Mah C; Koentgen S; Zhang L; Grimm MC; El-Omar E; Hold GL, 2021, 'Inflammatory bowel disease and the gut microbiota', Proceedings of the Nutrition Society, vol. 80, pp. 424 - 434,

Hansen R; Bajaj-Elliott M; Hold GL; Gerasimidis K; Iqbal TH; Amos G; Thomas LV; Marchesi JR, 2021, 'Next-generation sequencing as a clinical laboratory tool for describing different microbiotas: An urgent need for future paediatric practice', Archives of Disease in Childhood, vol. 106, pp. 1035,

Lambert K; Pappas D; Miglioretto C; Javadpour A; Reveley H; Frank L; Grimm MC; Samocha-Bonet D; Hold GL, 2021, 'Systematic review with meta-analysis: dietary intake in adults with inflammatory bowel disease', Alimentary Pharmacology and Therapeutics, vol. 54, pp. 742 - 754,

Nelson A; Stewart CJ; Kennedy NA; Lodge JK; Tremelling M; Probert CS; Parkes M; Mansfield JC; Smith DL; Hold GL; Lees CW; Bridge SH; Lamb CA, 2021, 'The Impact of NOD2 Genetic Variants on the Gut Mycobiota in Crohn's Disease Patients in Remission and in Individuals without Gastrointestinal Inflammation', Journal of Crohn's and Colitis, vol. 15, pp. 800 - 812,

Bornschein J; Tran-Nguyen T; Fernandez-Esparrach G; Ash S; Balaguer F; Bird-Lieberman EL; Córdova H; Dzerve Z; Fassan M; Leja M; Lyutakov I; Middelburg T; Moreira L; Nakov R; Nieuwenburg SAV; O'Connor A; Realdon S; De Schepper H; Smet A; Spaander MCW; Tolmanis I; Urbonas T; Weigt J; Hold GL; Link A; Kupcinskas J, 2021, 'Biopsy Sampling in Upper Gastrointestinal Endoscopy: A Survey from 10 Tertiary Referral Centres across Europe', Digestive Diseases, vol. 39, pp. 179 - 189,

Mahalhal A; Burkitt MD; Duckworth CA; Hold GL; Campbell BJ; Pritchard DM; Probert CS, 2021, 'Long‐term iron deficiency and dietary iron excess exacerbate acute dextran sodium sulphate‐induced colitis and are associated with significant dysbiosis', International Journal of Molecular Sciences, vol. 22,

Keller JJ; Ooijevaar RE; Hvas CL; Terveer EM; Lieberknecht SC; Högenauer C; Arkkila P; Sokol H; Gridnyev O; Mégraud F; Kump PK; Nakov R; Goldenberg SD; Satokari R; Tkatch S; Sanguinetti M; Cammarota G; Dorofeev A; Gubska O; Laniro G; Mattila E; Arasaradnam RP; Sarin SK; Sood A; Putignani L; Alric L; Baunwall SMD; Kupcinskas J; Link A; Goorhuis AG; Verspaget HW; Ponsioen C; Hold GL; Tilg H; Kassam Z; Kuijper EJ; Gasbarrini A; Mulder CJJ; Williams HRT; Vehreschild MJGT, 2021, 'A standardised model for stool banking for faecal microbiota transplantation: a consensus report from a multidisciplinary UEG working group', United European Gastroenterology Journal, vol. 9, pp. 229 - 247,

Williams AJ; Paramsothy R; Wu N; Ghaly S; Leach S; Paramsothy S; Corte C; O'Brien C; Burke C; Wark G; Samocha-Bonet D; Lambert K; Ahlenstiel G; Wasinger V; Dutt S; Pavli P; Grimm M; Lemberg D; Connor S; Leong R; Hold G, 2021, 'Australia IBD Microbiome (AIM) Study: protocol for a multicentre longitudinal prospective cohort study', BMJ open, vol. 11, pp. e042493,

Susic D; Davis G; O' Sullivan AJ; McGovern E; Harris K; Roberts LM; Craig ME; Mangos G; Hold GL; El-Omar EM; Henry A, 2020, 'Microbiome Understanding in Maternity Study (MUMS), an Australian prospective longitudinal cohort study of maternal and infant microbiota: study protocol', BMJ open, vol. 10, pp. e040189,

Link A; Hold G, 2020, 'First Case of Covid-19 in the United States', The New England journal of medicine, vol. 382, pp. e53,

Bezawada N; Phang TH; Hold GL; Hansen R, 2020, 'Autism Spectrum Disorder and the Gut Microbiota in Children: A Systematic Review', Annals of Nutrition and Metabolism, vol. 76, pp. 16 - 29,

Rajilic-Stojanovic M; Figueiredo C; Smet A; Hansen R; Kupcinskas J; Rokkas T; Andersen L; Machado JC; Ianiro G; Gasbarrini A; Leja M; Gisbert JP; Hold GL, 2020, 'Systematic review: gastric microbiota in health and disease', Alimentary Pharmacology and Therapeutics, vol. 51, pp. 582 - 602,

Ormsby MJ; Johnson SA; Carpena N; Meikle LM; Goldstone RJ; McIntosh A; Wessel HM; Hulme HE; McConnachie CC; Connolly JPR; Roe AJ; Hasson C; Boyd J; Fitzgerald E; Gerasimidis K; Morrison D; Hold GL; Hansen R; Walker D; Smith DGE; Wall DM, 2020, 'Propionic Acid Promotes the Virulent Phenotype of Crohn's Disease-Associated Adherent-Invasive Escherichia coli', Cell Reports, vol. 30, pp. 2297 - 2305.e5,

Keller JJ; Vehreschild MJGT; Hvas CL; Jorgensen SMD; Kupciskas J; Link A; Mulder CJJ; Goldenberg SD; Arasaradnam R; Sokol H; Gasbarrini A; Hoegenauer C; Terveer EM; Kuijper EJ; Arkkila P; Gasbarrini A; Gridnyev O; Megraud F; Kump PK; Nakov R; Goldenberg SD; Satokari R; Tkatch S; Sanguinetti M; Sokol H; Cammarota G; Dorofeev A; Keller JJ; Hoegenauer C; Gubska O; Ianiro G; Mattila E; Ooijevaar RE; Arasaradnam R; Sarin SK; Sood A; Putignani L; Alric L; Arkkila P; Hvas CL; Jorgensen SMD; Kuijper EJ; Kupciskas J; Link A; Mulder CJJ; Williams HRT; Goorhuis A; Verspaget HW; Terveer EM; Hold GL; Tilg H; Ponsioen CY, 2019, 'Stool for fecal microbiota transplantation should be classified as a transplant product and not as a drug', UNITED EUROPEAN GASTROENTEROLOGY JOURNAL, vol. 7, pp. 1408 - 1410,

Gemmell M; Berry S; Mukhopadhya I; Gong L; Hansen R; Hold G, 2019, 'Draft genome sequences of a Campylobacter curvus and three Campylobacter ureolyticus strains isolated from human colonic mucosal tissue', Microbiota in Health and Disease, vol. 1, pp. e148 - e148,

Rokkas T; Gisbert JP; Gasbarrini A; Hold GL; Tilg H; Malfertheiner P; Megraud F; O'Morain C, 2019, 'A network meta-analysis of randomized controlled trials exploring the role of fecal microbiota transplantation in recurrent Clostridium difficile infection', United European Gastroenterology Journal, vol. 7, pp. 1051 - 1063,

Hold GL; Allen-Vercoe E, 2019, 'Gut microbial biofilm composition and organisation holds the key to CRC', Nature Reviews Gastroenterology and Hepatology, vol. 16, pp. 329 - 330,

Ormsby MJ; Logan M; Johnson SA; McIntosh A; Fallata G; Papadopoulou R; Papachristou E; Hold GL; Hansen R; Ijaz UZ; Russell RK; Gerasimidis K; Wall DM, 2019, 'Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli', EBioMedicine, vol. 43, pp. 325 - 332,

Mahalhal A; Burkitt M; Duckworth C; Hold G; Campbell B; Pritchard M; Probert C, 2019, 'Long-term iron deficiency and iron supplementation exacerbate acute DSS-induced colitis and are associated with significant dysbiosis', ,

Mukhopadhya I; Segal JP; Carding SR; Hart AL; Hold GL, 2019, 'The gut virome: the ‘missing link’ between gut bacteria and host immunity?', Therapeutic Advances in Gastroenterology, vol. 12, pp. 1756284819836620,

Hsu T; Gemmell MR; Franzosa EA; Berry S; Mukhopadhya I; Hansen R; Michaud M; Nielsen H; Miller WG; Nielsen H; Bajaj-Elliott M; Huttenhower C; Garrett WS; Hold GL, 2019, 'Comparative genomics and genome biology of Campylobacter showae', Emerging Microbes and Infections, vol. 8, pp. 827 - 840,

Hold GL; Hansen R, 2019, 'Impact of the gastrointestinal microbiome in health and disease: Co-evolution with the host immune system', Curr Top Microbiol Immunol, vol. 421, pp. 303 - 318,

Bond A; Greenwood R; Lewis S; Corfe B; Sarkar S; O’Toole P; Rooney P; Burkitt M; Hold G; Probert C, 2019, 'Volatile organic compounds emitted from faeces as a biomarker for colorectal cancer', Alimentary Pharmacology and Therapeutics, vol. 49, pp. 1005 - 1012,

Hansen R; Gibson S; De Paiva Alves E; Goddard M; MacLaren A; Karcher AM; Berry S; Collie-Duguid ESR; El-Omar E; Munro M; Hold GL, 2018, 'Adaptive response of neonatal sepsis-derived Group B Streptococcus to bilirubin', Scientific Reports, vol. 8,

Gemmell MR; Berry S; Mukhopadhya I; Hansen R; Nielsen HL; Bajaj-Elliott M; Nielsen H; Hold GL, 2018, 'Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential', Emerging Microbes and Infections, vol. 7,

Ianiro G; Maida M; Burisch J; Simonelli C; Hold G; Ventimiglia M; Gasbarrini A; Cammarota G, 2018, 'Efficacy of different faecal microbiota transplantation protocols for Clostridium difficile infection: A systematic review and meta-analysis', United European Gastroenterology Journal, vol. 6, pp. 1232 - 1244,

McIlroy JR; Nalagatla N; Hansen R; Hart A; Hold GL, 2018, 'Faecal microbiota transplantation as a treatment for inflammatory bowel disease: A national survey of adult and paediatric gastroenterologists in the UK', Frontline Gastroenterology, vol. 9, pp. 250 - 255,

Mahalhal A; Williams JM; Johnson S; Ellaby N; Duckworth CA; Burkitt MD; Liu X; Hold GL; Campbell BJ; Mark Pritchard D; Probert CS, 2018, 'Oral iron exacerbates colitis and influences the intestinal microbiome', PLoS ONE, vol. 13,

Kupcinskas J; Hold GL, 2018, 'Other Helicobacters and the gastric microbiome', Helicobacter, vol. 23,

Mahalhal A; Williams J; Johnson S; Ellaby N; Duckworth C; Burkitt M; Liu X; Hold G; Campbell B; Pritchard M; Probert C, 2018, 'Oral iron exacerbates colitis and influences the intestinal microbiome', Oral iron exacerbates colitis and influences the intestinal microbiome,

Garg M; Hendy P; Ding JN; Shaw S; Hold G; Hart A, 2018, 'The effect of Vitamin D on intestinal inflammation and faecal microbiota in patients with ulcerative colitis', Journal of Crohn's and Colitis, vol. 12, pp. 963 - 972,

Kennedy NA; Lamb CA; Berry SH; Walker AW; Mansfield J; Parkes M; Simpkins R; Tremelling M; Nutland S; Parkhill J; Probert C; Hold GL; Lees CW, 2018, 'The impact of NOD2 variants on fecal microbiota in Crohn's disease and controls without gastrointestinal disease', Inflammatory Bowel Diseases, vol. 24, pp. 583 - 592,

Segal JP; Oke S; Hold GL; Clark SK; Faiz OD; Hart AL, 2018, 'Systematic review: ileoanal pouch microbiota in health and disease', Alimentary Pharmacology and Therapeutics, vol. 47, pp. 466 - 477,

McIlroy J; Nalagatla N; Hansen R; Hart A; Hold G, 2018, 'P659 FMT as a treatment for IBD: A national survey of gastroenterologists in the UK', Journal of Crohn's and Colitis, vol. 12, pp. S443 - S444,

Douglas GM; Hansen R; Jones CMA; Dunn KA; Comeau AM; Bielawski JP; Tayler R; El-Omar EM; Russell RK; Hold GL; Langille MGI; Limbergen JV, 2018, 'Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn's disease', Microbiome, vol. 6,

Brunner K; John CM; Phillips NJ; Alber DG; Gemmell MR; Hansen R; Nielsen HL; Hold GL; Bajaj-Elliott M; Jarvis GA, 2018, 'Novel Campylobacter concisus lipooligosaccharide is a determinant of inflammatory potential and virulence', Journal of Lipid Research, vol. 59, pp. 1893 - 1905,

McIlroy J; Ianiro G; Mukhopadhya I; Hansen R; Hold GL, 2018, 'Review article: the gut microbiome in inflammatory bowel disease—avenues for microbial management', Alimentary Pharmacology and Therapeutics, vol. 47, pp. 26 - 42,

Boyle SE; Cotton SC; Myint PK; Hold GL, 2017, 'The influence of early research experience in medical school on the decision to intercalate and future career in clinical academia: A questionnaire study', BMC Medical Education, vol. 17,

Maida M; Macaluso FS; Ianiro G; Mangiola F; Sinagra E; Hold G; Maida C; Cammarota G; Gasbarrini A; Scarpulla G, 2017, 'Screening of colorectal cancer: present and future', Expert Review of Anticancer Therapy, vol. 17, pp. 1131 - 1146,


Mukhopadhya I; Murdoch H; Berry S; Hunt A; Iturriza-Gomara M; Smith-Palmer A; Cameron JC; Hold GL, 2017, 'Changing molecular epidemiology of rotavirus infection after introduction of monovalent rotavirus vaccination in Scotland', Vaccine, vol. 35, pp. 156 - 163,

Watt E; Gemmell MR; Berry S; Glaire M; Farquharson F; Louis P; Murray GI; El-Omar E; Hold GL, 2016, 'Extending colonic mucosal microbiome analysis-assessment of colonic lavage as a proxy for endoscopic colonic biopsies', Microbiome, vol. 4, pp. 61,

Mukhopadhya I; Murray GI; Duncan L; Yuecel R; Shattock R; Kelly C; Iannelli F; Pozzi G; El-Omar EM; Hold GL; Hijazi K, 2016, 'Transporters for antiretroviral drugs in colorectal CD4+ T cells and circulating α4β7 integrin CD4+ T cells: Implications for HIV microbicides', Molecular Pharmaceutics, vol. 13, pp. 3334 - 3340,

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