Select Publications
Book Chapters
, 2022, 'Changes in Gut Microbiota Due to Gastrointestinal Surgery', in Comprehensive Gut Microbiota, pp. 139 - 144, http://dx.doi.org/10.1016/B978-0-12-819265-8.00075-9
, 2018, 'Molecular analysis of the microbiome in colorectal cancer', in Colorectal Cancer, Springer, pp. 139 - 153, http://dx.doi.org/10.1007/978-1-4939-7765-9_8
, 2016, 'Influence of host gene polymorphisms on development of gastroduodenal diseases', in Helicobacter pylori Research: From Bench to Bedside, pp. 339 - 362, http://dx.doi.org/10.1007/978-4-431-55936-8_14
, 2011, 'The Molecular Basis of Lipid A and Toll-Like Receptor 4 Interactions', in Knirel YA; Valvano MA (ed.), BACTERIAL LIPOPOLYSACCHARIDES: STRUCTURE, CHEMICAL SYNTHESIS, BIOGENESIS AND INTERACTION WITH HOST CELLS, SPRINGER-VERLAG WIEN, pp. 371 - 387, http://dx.doi.org/10.1007/978-3-7091-0733-1_12
Journal articles
, 2026, 'Primary sclerosing cholangitis displays distinct colonic mucosa topography yet a shared mast cell state with ulcerative colitis', Nature Communications, 17, http://dx.doi.org/10.1038/s41467-026-75231-1
, 2026, 'Gut Microbiota Are More Strongly Associated With Impairments in Health-Related Quality of Life Than Disease Activity in Inflammatory Bowel Disease', American Journal of Gastroenterology, 121, pp. 1929 - 1943, http://dx.doi.org/10.14309/ajg.0000000000003773
, 2026, 'Patients With Chronic Low Back Pain Without Advanced Disk Degeneration Exhibit Gut Microbiome Dysbiosis: Evidence From an Age-, Sex-, and BMI-Matched Pilot Study', Jor Spine, 9, http://dx.doi.org/10.1002/jsp2.70174
, 2026, 'Gut microbial signatures and stability are associated with a co-diagnosis of endometriosis and inflammatory bowel disease', Iscience, 29, http://dx.doi.org/10.1016/j.isci.2026.115437
, 2026, 'The Gut Microbiome at the Onset of Inflammatory Bowel Disease: A Systematic Review and Unified Bioinformatic Synthesis', Gastroenterology, 170, pp. 539 - 556, http://dx.doi.org/10.1053/j.gastro.2025.09.014
, 2026, 'Neglected kingdoms: the gut virome, mycobiome and their role in inflammatory bowel disease', Gut Microbes, 18, http://dx.doi.org/10.1080/19490976.2026.2653288
, 2026, 'Recent advances in our understanding of the gut microbiome: an analysis from the Gut Microbiota for Health Expert Panel of the British Society of Gastroenterology', Gut, http://dx.doi.org/10.1136/gutjnl-2026-338252
, 2026, '1175 MULTI-BACTERIA BIOMARKER PANEL FOR INFLAMMATORY BOWEL DISEASE DIAGNOSIS - AN INTERNATIONAL MULTI-CENTER STUDY', Gastroenterology, 170, pp. s - 923, http://dx.doi.org/10.1016/s0016-5085(26)02430-3
, 2026, '1175 MULTI-BACTERIA BIOMARKER PANEL FOR INFLAMMATORY BOWEL DISEASE DIAGNOSIS - AN INTERNATIONAL MULTI-CENTER STUDY', Gastrointestinal Endoscopy, 103, pp. s - 923, http://dx.doi.org/10.1016/s0016-5107(26)02361-8
, 2026, 'Bugs And Drugs: The Interplay Between IBD Therapeutics, Inflammation and the Gut Microbiome - Implications for Colonic Carcinogenesis', Best Practice & Research Clinical Gastroenterology, pp. 102139, http://dx.doi.org/10.1016/j.bpg.2026.102139
, 2026, 'Ecological mechanisms drive stool microbiome and mycobiome community assembly in paediatric Crohn's disease', Gut Microbiology, 3, pp. 100017, http://dx.doi.org/10.1016/j.gutmic.2026.100017
, 2025, 'Translational strategies for oral delivery of faecal microbiota transplantation', Gut, 74, pp. 2096 - 2117, http://dx.doi.org/10.1136/gutjnl-2025-335077
, 2025, 'DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study', Msystems, 10, http://dx.doi.org/10.1128/msystems.00466-25
, 2025, 'Gut microbial-derived 3,4-dihydroxyphenylacetic acid ameliorates reproductive phenotype of polycystic ovary syndrome', Imeta, 4, http://dx.doi.org/10.1002/imt2.70065
, 2025, 'Mucosal DNA and RNA virome alterations and their interactions with human RNA and microRNA transcriptomes in colorectal polyps', Egastroenterology, 3, http://dx.doi.org/10.1136/egastro-2025-100194
, 2025, 'Unravelling the Relationship between Obesity and Inflammatory Bowel Disease', Inflammatory Bowel Diseases, 31, pp. 2547 - 2560, http://dx.doi.org/10.1093/ibd/izaf098
, 2025, 'Common inherited loss-of-function mutations in the innate sensor NOD2 contribute to exceptional immune response to cancer immunotherapy', Proceedings of the National Academy of Sciences of the United States of America, 122, http://dx.doi.org/10.1073/pnas.2314258122
, 2025, 'The Circulating Methylome in Childhood-Onset Inflammatory Bowel Disease', Journal of Crohn S and Colitis, 19, http://dx.doi.org/10.1093/ecco-jcc/jjae157
, 2025, 'Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition', Msystems, 10, http://dx.doi.org/10.1128/msystems.01358-24
, 2025, 'International consensus statement on microbiome testing in clinical practice', Lancet Gastroenterology and Hepatology, 10, pp. 154 - 167, http://dx.doi.org/10.1016/S2468-1253(24)00311-X
, 2025, 'High fat diet drives increased dysbiosis in IBD compared to healthy controls', JOURNAL OF CROHNS & COLITIS, 19, pp. i2409 - i2409, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1511
, 2025, 'Multi-omic modelling of antibiotic perturbed faecal microbial communities demonstrates reduced microbial resilience in IBD', JOURNAL OF CROHNS & COLITIS, 19, pp. I2377 - I2377, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1493
, 2025, 'P0018 Fat rich dietary habits: Further increasing IBD risk in first degree relatives', Journal of Crohn's and Colitis, 19, pp. i358 - i358, http://dx.doi.org/10.1093/ecco-jcc/jjae190.0192
, 2025, 'P0161 The primary sclerosing cholangitis and ulcerative colitis colonic mucosa defined through paired microbial and single-cell RNA sequencing', Journal of Crohn's and Colitis, 19, pp. i557 - i557, http://dx.doi.org/10.1093/ecco-jcc/jjae190.0335
, 2025, 'P0203 Unique faecal & oral microbiota signatures in first degree relatives of inflammatory bowel disease patients', Journal of Crohn's and Colitis, 19, pp. i607 - i607, http://dx.doi.org/10.1093/ecco-jcc/jjae190.0377
, 2025, 'P0759 The interplay between dietary intake and disease activity in Australian adults with and without Inflammatory Bowel Disease', Journal of Crohn's and Colitis, 19, pp. i1465 - i1465, http://dx.doi.org/10.1093/ecco-jcc/jjae190.0933
, 2025, 'P1327 Microbial signatures associated with Inflammatory Bowel Disease in Australia: baseline data from the Australian IBD Microbiome study', Journal of Crohn's and Colitis, 19, pp. i2388 - i2389, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1501
, 2025, 'P1340 Gut microbiota changes are associated with type of advanced therapy in patients with Inflammatory Bowel Disease: baseline data from the Australian IBD Microbiome study', Journal of Crohn's and Colitis, 19, pp. i2410 - i2412, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1514
, 2025, 'P1344 Impaired health-related quality of life is associated with alterations in gut microbiota signatures in patients with Inflammatory Bowel Disease: baseline data from the Australian IBD Microbiome study', Journal of Crohn's and Colitis, 19, pp. i2419 - i2421, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1518
, 2025, 'P1345 Association of gut microbiota changes and disease activity in patients with Crohn’s disease and ulcerative colitis: baseline data from the Australian IBD Microbiome study', Journal of Crohn's and Colitis, 19, pp. i2422 - i2423, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1519
, 2025, 'The gut microbiome at the onset of inflammatory bowel disease: A systematic review of the literature and unified bioinformatic synthesis of sequencing data from >1000 treatment naïve patients', JOURNAL OF CROHNS & COLITIS, 19, pp. i2397 - i2398, http://dx.doi.org/10.1093/ecco-jcc/jjae190.1504
, 2025, 'Mo1960: IMPAIRED HEALTH-RELATED QUALITY OF LIFE IS ASSOCIATED WITH ALTERATIONS IN GUT MICROBIOTA SIGNATURES IN PATIENTS WITH INFLAMMATORY BOWEL DISEASE: BASELINE DATA FROM THE AUSTRALIAN IBD MICROBIOME STUDY.', Gastroenterology, 169, pp. s - 1243, http://dx.doi.org/10.1016/s0016-5085(25)03747-3
, 2025, 'Sa1795: GUT MICROBIOTA CHANGES ARE ASSOCIATED WITH TYPE OF ADVANCED THERAPY IN PATIENTS WITH IBD: BASELINE DATA FROM THE AUSTRALIAN IBD MICROBIOME STUDY', Gastroenterology, 169, pp. s - 532, http://dx.doi.org/10.1016/s0016-5085(25)02163-8
, 2025, 'Sa1921: IMPACT OF HIGH- AND LOW-EMULSIFIER DIETS ON GUT MICROBIOTA IN HEALTHY ADULTS', Gastroenterology, 169, http://dx.doi.org/10.1016/s0016-5085(25)02283-8
, 2025, 'Tu1939: INFANT MICROBIOME COLONISATION - A SYSTEMATIC REVIEW AND SECONDARY BIOINFORMATIC RE-ANALYSIS OF 16S SEQUENCING DATA', Gastroenterology, 169, pp. S - 1568, http://dx.doi.org/10.1016/s0016-5085(25)04468-3
, 2025, 'Tu2093: DISTINCT MICROBIAL SIGNATURES ARE ASSOCIATED WITH PEDIATRIC INFLAMMATORY BOWEL DISEASE - BASELINE DATA FROM THE AUSTRALIAN IBD MICROBIOME STUDY', Gastroenterology, 169, http://dx.doi.org/10.1016/s0016-5085(25)04560-3
, 2025, 'Welcome to Gut Microbiology: A new platform for a thriving field', Gut Microbiology, 1, pp. 100001 - 100001, http://dx.doi.org/10.1016/j.gutmic.2025.100001
, 2024, 'Dietary Patterns and Fibre Intake Are Associated with Disease Activity in Australian Adults with Inflammatory Bowel Disease: An Exploratory Dietary Pattern Analysis †', Nutrients, 16, http://dx.doi.org/10.3390/nu16244349
, 2024, 'Optimised human stool sample collection for multi-omic microbiota analysis', Scientific Reports, 14, http://dx.doi.org/10.1038/s41598-024-67499-4
, 2024, 'Dietary Emulsifier Exposure in People with Inflammatory Bowel Disease Compared with Healthy Controls: Is There a Cause for Concern?', Inflammatory Bowel Diseases, 30, pp. 1241 - 1250, http://dx.doi.org/10.1093/ibd/izad318
, 2024, 'Switching from Dose-Intensified intravenous to SubCutaneoUS infliximab in Inflammatory Bowel Disease (DISCUS-IBD): protocol for a multicentre randomised controlled trial', BMJ Open, 14, http://dx.doi.org/10.1136/bmjopen-2023-081787
, 2024, 'Prebiotic selection influencing inflammatory bowel disease treatment outcomes: A review of the preclinical and clinical evidence', Egastroenterology, 2, http://dx.doi.org/10.1136/egastro-2023-100055
, 2024, 'Pathogenesis and precision medicine for predicting response in inflammatory bowel disease: Advances and future directions', Egastroenterology, 2, http://dx.doi.org/10.1136/egastro-2023-100006
, 2024, 'Sa1887 IS DIVERSITY IMPORTANT IN THE GUT MICROBIOME AT IBD ONSET? A SYSTEMATIC REVIEW OF THE LITERATURE AND META-ANALYSIS OF ALPHA-DIVERSITY DATA', Gastroenterology, 166, pp. s-565-s-566, http://dx.doi.org/10.1016/s0016-5085(24)01772-4
, 2023, 'Mucin-microbiome signatures shape the tumor microenvironment in gastric cancer', Microbiome, 11, http://dx.doi.org/10.1186/s40168-023-01534-w
, 2023, 'HLA-DP on Epithelial Cells Enables Tissue Damage by NKp44+ Natural Killer Cells in Ulcerative Colitis', Gastroenterology, 165, pp. 946 - 962.e13, http://dx.doi.org/10.1053/j.gastro.2023.06.034