Select Publications

Book Chapters

Hu M; Lee M; Zhong L; Manefield MJ, 2019, 'Method Development for DNA and Proteome SIP Analysis of Activated Sludge for Anaerobic Dichloromethane Biodegradation', in Stable Isotope Probing, United States, pp. 207 - 219,

Cheema S; Zhang M; Labine-Romain M; Lal B; Lavania M; Lee M; Li X; Lauro FM; Beckmann S; Manefield M, 2018, 'Neutral red: The synthetic phenazine full of electrochemical surprises', in Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry, pp. 382 - 391,

Manefield M; Alfan-Guzman R; Lee M, 2017, 'Anaerobic bioreactors for the treatment of chlorinated hydrocarbons', in Thangadurai D; Sangeetha J (ed.), Industrial Biotechnology: Sustainable Production and Bioresource Utilization, CRC Press Taylor & Francis Group, pp. 421 - 452

Das T; Kimyon O; Manefield MJ, 2017, 'Bacterial Biofilms on Wounds, a Major Factor That Delays Wound Healing and a Potential Threat to Human Life and Economy', in Biofilm, Pilonidal Cysts and Sinuses, Springer International Publishing, pp. 69 - 88,

Manefield M; Lee M; Koenig J, 2017, 'The nature and relevance of solvent stress in microbes and mechanisms of tolerance.', in Chénard C; Lauro FM (ed.), Microbial Ecology in Extreme Environments., Springer, pp. 201 - 213,

Manefield M; Das T; Clare W; Ibugo A, 2016, 'Role of pyocyanin and extracellular DNA in facilitating Pseudomonas aeruginosa biofilm formation', in Dhanasekaran D; Thajuddin N (ed.), Microbial Biofilms - Importance and Applications, Intech,

Manefield M; Gutierrez-Zamora M-L; Whiteley AS, 2011, 'RNA STABLE ISOTOPE PROBING', in Murrell JC; Whiteley AS (ed.), STABLE ISOTOPE PROBING AND RELATED TECHNOLOGIES, AMER SOC MICROBIOLOGY, pp. 25 - 36,

Manefield MJ; Gutierrez-Zamora M; Whiteley A, 2011, 'RNA based stable isotope probing', in Murrell WG; Whiteley AS (ed.), Stable isotope probing in microbial molecular ecology, edn. 1, Wiley,

Griffiths RI; Manefield M; Whiteley AS; Bailey MJ, 2008, 'Section 1 update: DNA and RNA extraction from soil', in Molecular Microbial Ecology Manual, Springer Netherlands, pp. 2051 - 2060,

Whiteley A; Manefield MJ, 2005, 'Lessons from the genomes: Microbial ecology and genomics', in Osbourne M; Smith C (ed.), Molecular Microbial Ecology, edn. Original, Routledge, pp. 241 - 260

Manefield MJ; Griffiths R; Whiteley A; Bailey MJ, 2005, 'Stable Isotope Probing: A critique of its role in linking phylogeny and function', in Nannipieri P; Smalla K (ed.), Nucleic Acids and Proteins in Soil, edn. Original, Springer-Verlag, Heidelberg

Griffiths R; Manefield MJ; Whiteley A; Bailey MJ, 2004, 'DNA and RNA extraction from soil', in Kowalchuk GA; De Bruijn FJ; Head IM; Akkermans AD; Elsas JD (ed.), Molecular Microbial Ecology Manual, edn. 2nd, Kluwer Academic Publishers, Netherlands

Manefield MJ, 2003, 'Are you out there? Intercellular signalling in the microbial world', in Miller B; Day M (ed.), Mechanisms of Genomic Evolution in Bacteria, edn. Original, ASM Press, Washington DC, pp. 231 - 248

Journal articles

Kronen M; Vázquez-Campos X; Wilkins MR; Lee M; Manefield MJ, 2023, 'Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae.', mSystems, 8, pp. e0011923,

Lee M; Manefield M, 2023, 'Microbiology in sustainable remediation of contaminated sites', Microbiology Australia, 44, pp. 49 - 51,

Doyle E; Blanchon D; Wells S; de Lange P; Lockhart P; Waipara N; Manefield M; Wallis S; Berry TA, 2023, 'Internal Transcribed Spacer and 16S Amplicon Sequencing Identifies Microbial Species Associated with Asbestos in New Zealand', Genes, 14, pp. 729 - 729,

Rezaeimotlagh A; Serasinghe P; Manefield M; Trujillo FJ, 2023, 'An investigation into the electro-tolerance of Escherichia coli treated by radio frequency electric fields', Journal of Chemical Technology and Biotechnology, 98, pp. 151 - 158,

Wang S; He J; Shen C; Manefield MJ, 2022, 'Editorial: Organohalide respiration: New findings in metabolic mechanisms and bioremediation applications, Volume II', Frontiers in Microbiology, 13,

Holland SI; Vázquez-Campos X; Ertan H; Edwards RJ; Manefield MJ; Lee M, 2022, 'Metaproteomics reveals methyltransferases implicated in dichloromethane and glycine betaine fermentation by ‘Candidatus Formimonas warabiya’ strain DCMF', Frontiers in Microbiology, 13, pp. 1035247,

Méndez V; Holland S; Bhardwaj S; McDonald J; Khan S; O'Carroll D; Pickford R; Richards S; O'Farrell C; Coleman N; Lee M; Manefield MJ, 2022, 'Aerobic biotransformation of 6:2 fluorotelomer sulfonate by Dietzia aurantiaca J3 under sulfur-limiting conditions', Science of the Total Environment, 829,

Sun J; Jennepalli S; Lee M; Jones A; O'Carroll DM; Manefield MJ; Bhadbhade M; Åkermark B; Das B; Kumar N, 2022, 'Efficient Reductive Defluorination of Branched PFOS by Metal-Porphyrin Complexes', Environmental Science and Technology, 56, pp. 7830 - 7839,

Lee M; Liang G; Holland SI; O'Farrell C; Osborne K; Manefield MJ, 2022, 'Dehalobium species implicated in 2,3,7,8-tetrachlorodibenzo-p-dioxin dechlorination in the contaminated sediments of Sydney Harbour Estuary', Marine Pollution Bulletin, 179, pp. 113690,

Chen H; Kimyon Ö; Ramandi HL; Craig P; Gunawan C; Wu S; Manefield M; Crosky A; Saydam S, 2022, 'Microbiologically influenced stress corrosion cracking responsible for catastrophic failure of cable bolts', Engineering Failure Analysis, 131, pp. 105884 - 105884,

Lauro FM; Manefield MJ, 2022, 'Editorial—Self-assembly and emergent properties in populations of microbiologists', ISME Communications, 2, pp. 60 - 60,

Hellauer K; Michel P; Holland SI; Hübner U; Drewes JE; Lauro FM; Manefield MJ, 2021, 'Inferring trophic conditions in managed aquifer recharge systems from metagenomic data', Science of the Total Environment, 772,

Holland SI; Ertan H; Montgomery K; Manefield MJ; Lee M, 2021, 'Novel dichloromethane-fermenting bacteria in the Peptococcaceae family', ISME Journal, 15, pp. 1709 - 1721,

Sun J; Jennepalli S; Lee M; O'Carroll DM; Åkermark B; Manefield MJ; Das B; Kumar N, 2021, 'Removal of per- And polyfluoroalkyl substances (PFAS) from water by ceric(iv) ammonium nitrate', RSC Advances, 11, pp. 17642 - 17645,

Chen H; Kimyon O; Lamei Ramandi H; Manefield M; Kaksonen AH; Morris C; Crosky A; Saydam S, 2021, 'Microbiologically influenced corrosion of cable bolts in underground coal mines: The effect of Acidithiobacillus ferrooxidans', International Journal of Mining Science and Technology, 31, pp. 357 - 363,

Su H; Zhang D; Antwi P; Xiao L; Luo W; Deng X; Lai C; Liu Z; Shi M; Manefield MJ, 2021, 'Unraveling the effects of light rare-earth element (Lanthanum (III)) on the efficacy of partial-nitritation process and its responsible functional genera', Chemical Engineering Journal, 408,

Hazrin-Chong NH; Das T; Manefield M, 2021, 'Surface physico-chemistry governing microbial cell attachment and biofilm formation on coal', International Journal of Coal Geology, 236,

Su H; Zhang D; Antwi P; Xiao L; Deng X; Liu Z; Long B; Shi M; Manefield MJ; Ngo HH, 2021, 'Exploring potential impact(s) of cerium in mining wastewater on the performance of partial-nitrification process and nitrogen conversion microflora', Ecotoxicology and Environmental Safety, 209,

Kitto RZ; Dhillon Y; Bevington J; Horne M; Giegé P; Drouard L; Heintz D; Villette C; Corre N; Arrivé M; Manefield MJ; Bowman R; Favier JJ; Osborne B; Welch C; McKay CP; Hammond MC, 2021, 'Synthetic biological circuit tested in spaceflight', Life Sciences in Space Research, 28, pp. 57 - 65,

Penesyan A; Paulsen IT; Gillings MR; Kjelleberg S; Manefield MJ, 2020, 'Secondary Effects of Antibiotics on Microbial Biofilms', Frontiers in Microbiology, 11,

Charlesworth J; Kimyon O; Manefield M; Beloe CJ; Burns BP, 2020, 'Archaea join the conversation: detection of AHL-like activity across a range of archaeal isolates', FEMS Microbiology Letters, 367,

O'Carroll DM; Jeffries TC; Lee MJ; Le ST; Yeung A; Wallace S; Battye N; Patch DJ; Manefield MJ; Weber KP, 2020, 'Developing a roadmap to determine per- and polyfluoroalkyl substances-microbial population interactions', Science of the Total Environment, 712, pp. 135994,

Iverach CP; Cendón DI; Beckmann S; Hankin SI; Manefield M; Kelly BFJ, 2020, 'Constraining source attribution of methane in an alluvial aquifer with multiple recharge pathways', Science of the Total Environment, 703, pp. 134927,

Webster J; Lee M; Gurba LW; Manefield M; Thomas T, 2019, 'The effect of oxidative treatment on soluble compounds from Australian coal', Fuel, 257, pp. 116071 - 116071,

Low A; Zhao S; Rogers MJ; Zemb O; Lee M; He J; Manefield M, 2019, 'Isolation, characterization and bioaugmentation of an acidotolerant 1,2-dichloroethane respiring Desulfitobacterium species from a low pH aquifer', FEMS Microbiology Ecology, 95,

Kronen M; Lee M; Jones ZL; Manefield MJ, 2019, 'Reductive metabolism of the important atmospheric gas isoprene by homoacetogens', ISME Journal, 13, pp. 1168 - 1182,

Heckel B; Phillips E; Edwards E; Sherwood Lollar B; Elsner M; Manefield MJ; Lee M, 2019, 'Reductive Dehalogenation of Trichloromethane by Two Different Dehalobacter restrictus Strains Reveal Opposing Dual Element Isotope Effects', Environmental Science and Technology, 53, pp. 2332 - 2343,

Beckmann S; Luk AWS; Gutierrez-Zamora ML; Chong NHH; Thomas T; Lee M; Manefield M, 2019, 'Long-term succession in a coal seam microbiome during in situ biostimulation of coalbed-methane generation', ISME Journal, 13, pp. 632 - 650,

Wang S; He J; Shen C; Manefield MJ, 2019, 'Editorial: Organohalide respiration: New findings in metabolic mechanisms and bioremediation applications', Frontiers in Microbiology, 10, pp. 526,

Holland SI; Edwards RJ; Ertan H; Wong YK; Russell TL; Deshpande NP; Manefield MJ; Lee M, 2019, 'Whole genome sequencing of a novel, dichloromethane-fermenting Peptococcaceae from an enrichment culture', PeerJ, 2019,

Luk AWS; Beckmann S; Manefield M, 2018, 'Dependency of DNA extraction efficiency on cell concentration confounds molecular quantification of microorganisms in groundwater', FEMS Microbiology Ecology, 94,

Bakthavathsalam P; Longatte G; Jensen SO; Manefield M; Gooding JJ, 2018, 'Locked nucleic acid molecular beacon for multiplex detection of loop mediated isothermal amplification', Sensors and Actuators, B: Chemical, 268, pp. 255 - 263,

Chau ATT; Lee M; Adrian L; Manefield MJ, 2018, 'Syntrophic partners enhance growth and respiratory dehalogenation of hexachlorobenzene by Dehalococcoides mccartyi strain CBDB1', Frontiers in Microbiology, 9,

in 't Zandt MH; Beckmann S; Rijkers R; Jetten MSM; Manefield M; Welte CU, 2018, 'Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well', Microbial Biotechnology, 11, pp. 626 - 638,

Jugder BE; Payne KAP; Fisher K; Bohl S; Lebhar H; Manefield M; Lee MJ; Leys D; Marquis C, 2018, 'Heterologous Production and Purification of a Functional Chloroform Reductive Dehalogenase', ACS Chemical Biology,

Kuppusamy R; Yasir M; Berry T; Cranfield CG; Nizalapur S; Yee E; Kimyon O; Taunk A; Ho KKK; Cornell B; Manefield M; Willcox M; Black DSC; Kumar N, 2018, 'Design and synthesis of short amphiphilic cationic peptidomimetics based on biphenyl backbone as antibacterial agents', European Journal of Medicinal Chemistry, 143, pp. 1702 - 1722,

Das T; Simone M; Ibugo AI; Witting PK; Manefield M; Manos J, 2017, 'Glutathione enhances antibiotic efficiency and effectiveness of DNase I in disrupting Pseudomonas aeruginosa biofilms while also inhibiting pyocyanin activity, thus facilitating restoration of cell enzymatic activity, Confluence and Viability', Frontiers in Microbiology, 8,

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