By Professor Raina MacIntyre

Conference Abstracts

Chughtai AA; MacIntyre R; Peng Y; Wang Q; Ashraf MO; Dung TC; Seale H, 2014, 'Infection control survey in the hospitals to examine the role of masks and respirators for the prevention of respiratory infections in healthcare workers (HCWs)', in International Journal of Infectious Diseases, Elsevier, Vol. 21, pp. 408, http://dx.doi.org/10.1016/j.ijid.2014.03.1262

Muscatello DJ; Amin J; MacIntyre CR; Newall AT; Rawlinson WD; Sintchenko V; Gilmour R; Thackway S, 2014, 'Under-ascertainment of Illness due to Influenza in Administrative Databases, a Population-based Record Linkage Study', in Online J Public Health Inform, University of Illinois at Chicago Library, Vol. 6, pp. e169, http://dx.doi.org/10.5210/ojphi.v6i1.5189

Muscatello D; MacIntyre R; Dwyer D; Newall A, 2012, 'Comparison of influenza A(H1N1)pdm09 mortality with seasonal influenza mortality in Australia', in INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, ELSEVIER SCI LTD, Vol. 16, pp. E355 - E355, http://dx.doi.org/10.1016/j.ijid.2012.05.439

Seale H; MacIntyre R; McLaws M-L; Maher L; Newall A; Kaur R; Nga PT; Nguyen TH; Dung TC; Dwyer D, 2012, 'Health care worker practices around face mask use in hospitals in Hanoi, Vietnam', in INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, ELSEVIER SCI LTD, Vol. 16, pp. E384 - E384, http://dx.doi.org/10.1016/j.ijid.2012.05.503

MacIntyre R; Dwyer D; Seale H; Quanyi W; Yi Z; Yang P; Weixan S, 2012, 'High risk procedures and respiratory infections in hospital health care workers - quantifying the risk', in INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, ELSEVIER SCI LTD, Vol. 16, pp. E379 - E379, http://dx.doi.org/10.1016/j.ijid.2012.05.491

Liyanage S; Segelov E; Garland S; Tabrizi S; Seale H; Crowe P; Dwyer D; Barbour A; Newall A; Malik A; MacIntyre R, 2012, 'The role of human papillomaviruses in oesophageal squamous cell carcinoma: a review of the evidence', in International Journal of Infectious Diseases, Elsevier, Vol. 16, pp. e351 - e352, http://dx.doi.org/10.1016/j.ijid.2012.05.431

Reports

Hammoud M; MacIntyre R; Grulich A, 2024, Final TraX mpox data report: Report period 10 October 2022 to 21 April 2024

Hammoud M; Wells N; Grulich A; MacIntyre R, 2024, TraX mpox data report: Report period 10 October 2022 to 31 December 2023, http://dx.doi.org/10.26190/unsworks/28724

Hammoud M; Grulich A; MacIntyre R, 2023, TraX mpox data report: Report period 10 October 2022 to 2 July 2023, http://dx.doi.org/10.26190/unsworks/28611

Hammoud M; Grulich A; MacIntyre R, 2023, TraX mpox month eight report: Report period 10 October 2022 to 21 May 2023, http://dx.doi.org/10.26190/unsworks/28601

Hammoud M; MacIntyre R; Grulich A, 2023, TraX Six Month MPOX Report: Report period 10 October 2022 to 26 March 2023

Hammoud M; MacIntyre R; Grulich A, 2023, TraX Study Quarterly Monkeypox (MPOX) Report 01: Report period 10 October 2022 to 1 January 2023, http://dx.doi.org/10.26190/unsworks/28473

Simpson P; Butler T; MacIntyre R; Levy M, 2021, Updated report on the impact of the COVID-19 virus on the New South Wales prisoner population (9 September 2021): Report to Legal Aid NSW, School of Population Health, UNSW Sydney, Sydney

Butler T; MacIntyre R; Simpson P; Levy M, 2020, Report on the efficacy of measures to prevent the introduction and spread of COVID-19 to Silverwater women’s correctional centre

Butler T; MacIntyre R; Simpson P; Levy M, 2020, Supplementary Report on COVID-19 and the Impact on NSW Prisoners, The Kirby Institute, Sydney, https://www.publicdefenders.nsw.gov.au/Documents/supplementary-report-covid-19-impact-on-nsw-prisoners-22-5-2020.pdf

Butler T; MacIntyre R; Simpson P; Levy M, 2020, COVID-19 and the Impact on NSW Prisoners, The Kirby Institute, Sydney, https://www.publicdefenders.nsw.gov.au/Documents/butler-et-al-report-on-covid-19-and-impact%20on-nsw-prisoners.pdf

Zwi A; Rosewell A; Bieb S; Clark G; Ropa B; Posanai E; Miller G; MacIntyre R, 2013, Human resources for health: practice and policy implications for emergency response arising from the cholera outbreak in Papua New Guinea, Human Resources for Health Knowledge Hub, UNSW, Sydney, Australia, https://www.researchgate.net/publication/243114608

MacIntyre CR, 2004, Protecting Australia from communicable diseases: everybody’s business, Commonwealth Chief Medical Officer, Department of Health and Ageing, Canberra, Australia

Greenhalgh T; Baker M; Chugtai A; Fisman D; Kunasekaran M; Kvalsvig A; Lupton D; MacIntyre CR; Meng MO; Bhattacharjee S; Tawfiq E; Ungrin M; Vipond J; Chughtai A, Masks and Respirators for Prevention of Respiratory Infections: A State of the Science Review, INPLASY - International Platform of Registered Systematic Review and Meta-analysis Protocols, http://dx.doi.org/10.37766/inplasy2024.1.0087

Honeyman D; Keep J; Heslop DJ; Lim S; Gurdasani D; Macintyre CR, The history of chemical warfare: a systematic review, INPLASY - International Platform of Registered Systematic Review and Meta-analysis Protocols, http://dx.doi.org/10.37766/inplasy2024.3.0016, https://doi.org/10.37766/inplasy2024.3.0016

Media

MacIntyre R; Chughtai A; de Silva C; Doolan C; Bahl P; Bhattacharjee S, 2020, This video shows just how easily COVID-19 could spread when people sing together, The Conversation, Australia, https://theconversation.com/this-video-shows-just-how-easily-covid-19-could-spread-when-people-sing-together-144789

MacIntyre R; Chughtai A; Doolan C; Bahl P; Bhattacharjee S, 2020, Which mask works best? We filmed people coughing and sneezing to find out, The Conversation, Australia, https://theconversation.com/which-mask-works-best-we-filmed-people-coughing-and-sneezing-to-find-out-143173

MacIntyre R; Phelps K; Maher L; Bhattacharjee S, 2020, Victorians, and anyone else at risk, should now be wearing face masks. Here’s how to make one, The Conversation, Australia, https://theconversation.com/victorians-and-anyone-else-at-risk-should-now-be-wearing-face-masks-heres-how-to-make-one-141980

Preprints

Khaokaew Y; Kong R; Zufle A; Xue H; Anderson T; MacIntyre CR; Scotch M; Salim FD; Heslop DJ, 2026, An Infectious Disease Spread Simulation Based on Large Language Model Decision Making, http://dx.doi.org/10.48550/arxiv.2606.06360

Stone H; MacIntyre CR; Kunasekaran M; Poulos C; Heslop D, 2026, Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study, http://dx.doi.org/10.48550/arxiv.2512.03866

Du J; Stone H; Yang Y; Desai A; Xue H; Züfle A; MacIntyre CR; Salim FD, 2026, Genomic-Informed Heterogeneous Graph Learning for Spatiotemporal Avian Influenza Outbreak Forecasting, http://dx.doi.org/10.48550/arxiv.2505.22692

Stone H; Du J; Yang Y; Desai A; Dawson R; Xue H; Heslop D; Scotch M; Züfle A; MacIntyre CR; Salim F, 2026, From Ecological Connectivity to Outbreak Risk: A Heterogeneous Graph Network for Epidemiological Reasoning under Sparse Spatiotemporal Data, http://dx.doi.org/10.48550/arxiv.2601.09738

Dhawan S; Lim PL; Pan-ngum W; MacIntyre CR; Blacksell S, 2026, Determinants of Fatality and Secondary Transmission Following Accidental Laboratory-Associated Pathogen Incidents: A Global Risk Modelling Study (1900–2025), http://dx.doi.org/10.2139/ssrn.6348568

Kolawole O; Quigley A; Chughtai A; Macintyre C, 2025, Early Detection and Surveillance of Infectious Disease Outbreaks in Nigeria: Integrating Nigerian Pidgin English (Npe) Into the Epiwatch® Platform, http://dx.doi.org/10.21203/rs.3.rs-5066946/v1

Stone H; Du J; Xue H; Scotch M; Heslop D; Züfle A; MacIntyre CR; Salim F, 2025, A Probabilistic Framework for Imputing Genetic Distances in Spatiotemporal Pathogen Models, http://dx.doi.org/10.48550/arxiv.2506.09076

Khaokaew Y; Salim FD; Züfle A; Xue H; Anderson T; MacIntyre CR; Scotch M; Heslop DJ, 2025, Evaluating the Bias in LLMs for Surveying Opinion and Decision Making in Healthcare, http://dx.doi.org/10.48550/arxiv.2504.08260

Hammoud M; Smith AKJ; Sachs O; Bavinton B; Holt M; Giles M; MacGibbon J; Read P; Fairley CK; Jin F; Kelleher A; Delpech V; Keane R; MacIntyre CR; Grulich AE, 2025, Drivers, Barriers, and Implications of Mpox Vaccine Uptake in Australia Among Gay, Bisexual, and Other Men Who Have Sex with Men: Results from a Prospective Observational Mixed-Methods Study (2022-2024), http://dx.doi.org/10.2139/ssrn.5290952

Moa A; Vargas-Zambrano J; Maruszak H; Costantino V; MacIntyre R, 2025, The burden of pertussis disease and vaccination coverage in Australian adults attending primary health care, http://dx.doi.org/10.1101/2025.08.09.25333139

Body A; Lal L; Srihari S; MacIntyre CR; Buttery J; Ahern ES; Opat S; Leahy M; Hamad N; Milch V; Turville S; Smith C; Lineburg KE; Naing Z; Rawlinson W; Segelov E, 2024, Comprehensive Humoral and Cellular Immune Responses to Covid-19 Vaccination In Adults with Cancer, http://dx.doi.org/10.2139/ssrn.4951802

Body A; Lal L; Downie PA; Anazodo A; O' Brien T; Padhye B; Fuentes Bolanos N; Srihari S; Ahern ES; Haber M; Smith C; Lineburg KE; Turville S; Naing Z; Rawlinson W; Buttery J; MacIntyre CR; Milch V; Segelov E, 2024, Humoral and Cellular Immune Responses to BNT162b2 COVID-19 Vaccination in Children with Cancer, http://dx.doi.org/10.2139/ssrn.5025909

Akhtar Z; Moa AM; Tan T; Fröbert O; Menzies R; MacIntyre CR, 2024, Prevention of Cardiovascular Diseases (CVD) with Standard-Dose Influenza Vaccine in People Aged ≥50 Years in Australia During the 2017 A/H3N2 Epidemic, http://dx.doi.org/10.2139/ssrn.4941324

Hong J; Dung D; Hutchinson D; Akhtar Z; Chen R; Dawson R; Joshi A; Lim S; MacIntyre CR; Gurdasani D, 2023, Relation Extraction from News Articles (RENA): A Tool for Epidemic Surveillance, http://dx.doi.org/10.48550/arxiv.2311.01472

Body A; Martin C; Busija L; Lal L; Ahern E; MacIntyre R; Segelov E, 2023, SARS-CoV-2 post-vaccine surveillance studies in Australian children and adults with cancer: SerOzNET Statistical Analysis Plan, http://dx.doi.org/10.1101/2023.02.26.23286261

Li M; Chong KL; Ng CS; Bahl P; de Silva CM; Verzicco R; Doolan C; MacIntyre CR; Lohse D, 2022, Towards realistic simulations of human cough: effect of droplet emission duration and spread angle, http://dx.doi.org/10.48550/arxiv.2210.00534

NWACHUKWU C; MacIntyre CR; Stone H, 2021, Epidemiological and phylogenetic analyses of COVID-19 in Africa using open-source sequence data., http://dx.doi.org/10.22541/au.161160186.62286068/v1

Ngonghala CN; Iboi E; Eikenberry S; Scotch M; MacIntyre CR; Bonds MH; Gumel AB, 2020, Mathematical assessment of the impact of non-pharmaceutical interventions on curtailing the 2019 novel Coronavirus, http://dx.doi.org/10.48550/arxiv.2004.07391

Quigley AL; Nguyen PY; Stone H; Heslop DJ; Chughtai AA; MacIntyre CR, 2020, Estimated Mask Use and Temporal Relationship to COVID-19 Epidemiology of Black Lives Matter Protests in 12 Cities, http://dx.doi.org/10.2139/ssrn.3712951

Scott N; Saul A; Spelman T; Stoove M; Pedrana A; Saeri A; Grundy E; Smith L; Toole M; MacIntyre R; Crabb B; Hellard ME, 2020, The Introduction of a Mandatory Mask Policy Was Associated with Significantly Reduced COVID-19 Cases in a Major Metropolitan City, http://dx.doi.org/10.2139/ssrn.3714648

Joshi A; Karimi S; Sparks R; Paris C; MacIntyre CR, 2019, A Comparison of Word-based and Context-based Representations for Classification Problems in Health Informatics, http://dx.doi.org/10.48550/arxiv.1906.05468

Joshi A; Karimi S; Sparks R; Paris C; MacIntyre CR, 2019, Survey of Text-based Epidemic Intelligence: A Computational Linguistic Perspective, http://dx.doi.org/10.48550/arxiv.1903.05801

Lim S; Jindal M; Stone H; McIntyre R, A geospatial perspective towards the role of migratory birds and poultry in the spread of Avian Influenza, http://dx.doi.org/10.21203/rs.3.rs-4451337/v1

Wang X; Pan Y; Zhang D; Chen L; Jia L; Li X; Yang P; Wang Q; Macintyre CR, Basic epidemiological parameter values from data of real-world in mega-cities: the characteristics of COVID-19 in Beijing, China, http://dx.doi.org/10.21203/rs.3.rs-23937/v2

Wang X; Pan Y; Zhang D; Chen L; Jia L; Li X; Yang P; Wang Q; Macintyre CR, Basic epidemiological parameter values from data of real-world in mega-cities: the characteristics of COVID-19 in Beijing, China, http://dx.doi.org/10.21203/rs.3.rs-23937/v1

Wiblin S; Kunasekaran M; MacIntyre R; Seale H, Behavioural Drivers of COVID-19 Vaccination and Antiviral Uptake in Australia: A Cross-Sectional Analysis Using the COM-B Framework, http://dx.doi.org/10.20944/preprints202604.1674.v1

Najmi A; Safarighouzhdi F; Miller EJ; MacIntyre R; Rashidi TH, Determination of COVID-19 parameters for an agent-based model: Easing or tightening control strategies, http://dx.doi.org/10.1101/2020.06.20.20135186

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