Select Publications

Journal articles

Offner K; Sitnikova E; Joiner K; MacIntyre R, 2020, 'Towards understanding cybersecurity capability in Australian healthcare organisations: A systematic review of recent trends, threats and mitigation (submitted)', Intelligence and National Security

Joshi A; Sparks R; McHugh J; Karimi S; Paris C; MacIntyre CR, 2020, 'Harnessing Tweets for Early Detection of an Acute Disease Event', Epidemiology (Cambridge, Mass.), vol. 31, pp. 90 - 97, http://dx.doi.org/10.1097/EDE.0000000000001133

Stelzer-Braid S; Wynn M; Chatoor R; Scotch M; Ramachandran V; Teoh HL; Farrar MA; Sampaio H; Andrews PI; Craig ME; MacIntyre CR; Varadhan H; Kesson A; Britton PN; Newcombe J; Rawlinson WD, 2020, 'Next generation sequencing of human enterovirus strains from an outbreak of enterovirus A71 shows applicability to outbreak investigations', Journal of Clinical Virology, vol. 122, pp. 104216 - 104216, http://dx.doi.org/10.1016/j.jcv.2019.104216

Bhat A; Khanna S; Chen HH; Lee L; Gan GCH; Negishi K; MacIntyre CR; Nunes MCP; Tan TC, 2020, 'Impairment of left atrial function and cryptogenic stroke: Potential insights in the pathophysiology of stroke in the young', IJC Heart and Vasculature, vol. 26, http://dx.doi.org/10.1016/j.ijcha.2019.100454

Liu B; He W-Q; Newall AT; Quinn HE; Bartlett M; Hayen A; Sheppeard V; Rose N; MacIntyre CR; McIntyre P, 2019, 'Effectiveness of acellular pertussis vaccine in older adults: nested matched case-control study.', Clin Infect Dis, http://dx.doi.org/10.1093/cid/ciz821

Trent MJ; Zhang EJ; Chughtai AA; MacIntyre CR, 2019, 'Parental opinions towards the “No Jab, No Pay” policy in Australia', Vaccine, vol. 37, pp. 5250 - 5256, http://dx.doi.org/10.1016/j.vaccine.2019.07.066

Raj SM; Chughtai AA; Sharma A; Tan TC; MacIntyre CR, 2019, 'Cost-benefit analysis of a national influenza vaccination program in preventing hospitalisation costs in Australian adults aged 50–64 years old', Vaccine, vol. 37, pp. 5979 - 5985, http://dx.doi.org/10.1016/j.vaccine.2019.08.028

Bhattacharjee S; Joshi R; Chughtai AA; Macintyre CR, 2019, 'Graphene Modified Multifunctional Personal Protective Clothing', Advanced Materials Interfaces, pp. 1900622 - 1900622, http://dx.doi.org/10.1002/admi.201900622

MacIntyre R; Valentina C; Biswajit M; Devina N; Mohana Priya K; David H, 2019, 'Epidemic size, duration and vaccine stockpiling following a large-scale attack with smallpox', Global Biosecurity, vol. 1, pp. 74 - 81, http://dx.doi.org/10.31646/gbio.13

David H; MacIntyre R, 2019, 'Germ line genome editing and the emerging struggle for supremacy in the Chemical, Biological and Radiological (CBR) balance of power', Global Biosecurity, vol. 1, pp. 169 - 173

Costantino V; Trent M; MacIntyre CR, 2019, 'Modelling of optimal timing for influenza vaccination as a function of intraseasonal waning of immunity and vaccine coverage', Vaccine, vol. 37, pp. 6768 - 6775, http://dx.doi.org/10.1016/j.vaccine.2019.08.069

Dyda A; Karki S; Kong M; Gidding HF; Kaldor JM; McIntyre P; Banks E; MacIntyre CR; Liu B, 2019, 'Influenza vaccination coverage in a population-based cohort of Australian-born Aboriginal and non-Indigenous older adults', Communicable diseases intelligence (2018), vol. 43, http://dx.doi.org/10.33321/cdi.2019.43.30

Joshi A; Karim S; Sparks R; Paris C; MacIntyre R, 2019, 'Survey of Text-based Epidemic Intelligence: A Computational Linguistic Perspective', ACM Computing Surveys

MacIntyre CR; Ridda I; Trent MJ; McIntyre P, 2019, 'Persistence of immunity to conjugate and polysaccharide pneumococcal vaccines in frail, hospitalised older adults in long-term follow up', Vaccine, vol. 37, pp. 5016 - 5024, http://dx.doi.org/10.1016/j.vaccine.2019.07.005

Tan HY; Lai E; Kunasekaran M; Chughtai AA; Trent M; Poulos CJ; MacIntyre CR, 2019, 'Prevalence and predictors of influenza vaccination among residents of long-term care facilities', Vaccine, vol. 37, pp. 6329 - 6335, http://dx.doi.org/10.1016/j.vaccine.2019.09.021

MacIntyre CR; Shaw PJ; Mackie FE; Boros C; Marshall H; Seale H; Kennedy SE; Moa A; Chughtai AA; Trent M; O'Loughlin EV; Stormon M, 2019, 'Long term follow up of persistence of immunity following quadrivalent Human Papillomavirus (HPV) vaccine in immunocompromised children', Vaccine, vol. 37, pp. 5630 - 5636, http://dx.doi.org/10.1016/j.vaccine.2019.07.072

Chughtai AA; Stelzer-Braid S; Rawlinson W; Pontivivo G; Wang Q; Pan Y; Zhang D; Zhang Y; Li L; MacIntyre CR, 2019, 'Contamination by respiratory viruses on outer surface of medical masks used by hospital healthcare workers', BMC Infectious Diseases, vol. 19, pp. 491, http://dx.doi.org/10.1186/s12879-019-4109-x

Padmawati RS; Heywood A; Sitaresmi MN; Atthobari J; MacIntyre CR; Soenarto Y; Seale H, 2019, 'Religious and community leaders' acceptance of rotavirus vaccine introduction in Yogyakarta, Indonesia: A qualitative study', BMC Public Health, vol. 19, pp. 368, http://dx.doi.org/10.1186/s12889-019-6706-4

Armstrong J; Adam D; Kunasekaran M; MacIntyre R; Nand D; Heslop D, 2019, 'Themes and correlations of participant experience and evaluation of an interactive bioterrorism release exercise – a mixed methods study', Journal of Global Biosecurity, vol. 1

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Real-time monitoring of events applied to syndromic surveillance', Quality Engineering, vol. 31, pp. 73 - 90, http://dx.doi.org/10.1080/08982112.2018.1537443

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Rejoinder', Quality Engineering, vol. 31, pp. 105 - 107, http://dx.doi.org/10.1080/08982112.2018.1547831

Adam DC; Scotch M; Macintyre CR, 2019, 'Phylodynamics of influenza A/H1N1pdm09 in India reveals circulation patterns and increased selection for clade 6b residues and other high mortality mutants', Viruses, vol. 11, http://dx.doi.org/10.3390/v11090791

Zhang EJ; Chughtai AA; Heywood A; MacIntyre CR, 2019, 'Influence of political and medical leaders on parental perception of vaccination: A cross-sectional survey in Australia', BMJ Open, vol. 9, http://dx.doi.org/10.1136/bmjopen-2018-025866

MacIntyre CR; Costantino V; Kunasekaran MP, 2019, 'Health system capacity in Sydney, Australia in the event of a biological attack with smallpox', PLoS ONE, vol. 14, pp. e0217704 - e0217704, http://dx.doi.org/10.1371/journal.pone.0217704

MacIntyre R; Heslop D; Nand D; Schramm C; Butel M; Rawlinson W; Baker M; Kiedrzynski T; Nelson C; Fotualii L; Yeo K; Elsgaard J; Fonua L; Lane M, 2019, 'Exercise Mataika: White Paper on response to a smallpox bioterrorism release in the Pacific', Journal of Global Biosecurity

Moa A; Muscatello D; Chughtai A; Chen X; Raina MacIntyre C, 2019, 'Flucast: A real-time tool to predict severity of an influenza season', Journal of Medical Internet Research, vol. 21, pp. e11780, http://dx.doi.org/10.2196/11780

Moa AM; Adam DC; MacIntyre CR, 2019, 'Inter-seasonality of influenza in Australia', Influenza and other Respiratory Viruses, vol. 13, pp. 459 - 464, http://dx.doi.org/10.1111/irv.12642

Jayasundara D; Hui BB; Regan DG; Heywood AE; MacIntyre CR; Wood JG, 2019, 'Modelling the decline and future of hepatitis A transmission in Australia', Journal of Viral Hepatitis, vol. 26, pp. 199 - 207, http://dx.doi.org/10.1111/jvh.13018

Dirmesropian S; Liu B; Wood JG; MacIntyre CR; McIntyre P; Karki S; Jayasinghe S; Newall AT, 2019, 'Pneumonia hospitalisation and case-fatality rates in older australians with and without risk factors for pneumococcal disease: Implications for vaccine policy', Epidemiology and Infection, vol. 147, pp. e118, http://dx.doi.org/10.1017/S0950268818003473

Kunasekaran MP; Chen X; Costantino V; Chughtai AA; MacIntyre CR, 2019, 'Evidence for Residual Immunity to Smallpox After Vaccination and Implications for Re-emergence', Military medicine, vol. 184, pp. e668 - e679, http://dx.doi.org/10.1093/milmed/usz181

Barnes CE; MacIntyre CR, 2019, 'Risk modelling the mortality impact of antimicrobial resistance in secondary pneumococcal pneumonia infections during the 2009 influenza pandemic', International Journal of Infectious Diseases, vol. 85, pp. 1 - 6, http://dx.doi.org/10.1016/j.ijid.2019.05.005

Iuliano AD; Roguski KM; Chang HH; Muscatello DJ; Palekar R; Tempia S; Cohen C; Gran JM; Schanzer D; Cowling BJ; Wu P; Kyncl J; Ang LW; Park M; Redlberger-Fritz M; Yu H; Espenhain L; Krishnan A; Emukule G; van Asten L; Pereira da Silva S; Aungkulanon S; Buchholz U; Widdowson MA; Bresee JS; Azziz-Baumgartner E; Cheng PY; Dawood F; Foppa I; Olsen S; Haber M; Jeffers C; MacIntyre CR; Newall AT; Wood JG; Kundi M; Popow-Kraupp T; Ahmed M; Rahman M; Marinho F; Sotomayor Proschle CV; Vergara Mallegas N; Luzhao F; Sa L; Barbosa-Ramírez J; Sanchez DM; Gomez LA; Vargas XB; Acosta Herrera AB; Llanés MJ; Fischer TK; Krause TG; Mølbak K; Nielsen J; Trebbien R; Bruno A; Ojeda J; Ramos H; an der Heiden M; del Carmen Castillo Signor L; Serrano CE; Bhardwaj R; Chadha M; Narayan V; Kosen S; Bromberg M; Glatman-Freedman A; Kaufman Z; Arima Y; Oishi K; Chaves S; Nyawanda B; Al-Jarallah RA; Kuri-Morales PA; Matus CR; Corona MEJ; Burmaa A; Darmaa O; Obtel M; Cherkaoui I; van den Wijngaard CC; van der Hoek W; Baker M; Bandaranayake D; Bissielo A; Huang S; Lopez L; Newbern C; Flem E; Grøneng GM; Hauge S; de Cosío FG; de Moltó Y; Castillo LM; Cabello MA; von Horoch M; Medina Osis J; Machado A; Nunes B; Rodrigues AP, 2018, 'Estimates of global seasonal influenza-associated respiratory mortality: a modelling study', The Lancet, vol. 391, pp. 1285 - 1300, http://dx.doi.org/10.1016/S0140-6736(17)33293-2

Saha A; Hayen A; Ali M; Rosewell A; MacIntyre CR; Clemens JD; Qadri F, 2018, 'Socioeconomic drivers of vaccine uptake: An analysis of the data of a geographically defined cluster randomized cholera vaccine trial in Bangladesh', Vaccine, vol. 36, pp. 4742 - 4749, http://dx.doi.org/10.1016/j.vaccine.2018.04.084

Chen X; Chughtai A; MacIntyre RAINA, 2018, 'Recalibration of the Grunow-Finke Assessment Tool to Improve Performance in Detecting Unnatural Epidemics', Risk Analysis, http://dx.doi.org/10.1111/risa.13255

Bui CM; Adam DC; Njoto E; Scotch M; MacIntyre CR, 2018, 'Characterising routes of H5N1 and H7N9 spread in China using Bayesian phylogeographical analysis', Emerging microbes & infections, vol. 7, pp. 184, http://dx.doi.org/10.1038/s41426-018-0185-z

Dyda A; Stelzer-Braid S; Adam D; Chughtai AA; Macintyre CR, 2018, 'The association between acute flaccid myelitis (AFM) and enterovirus D68 (EV-D68) – what is the evidence for causation?', Eurosurveillance, vol. 23, http://dx.doi.org/10.2807/1560-7917.ES.2018.23.3.17-00310

Adam DC; Bui CM; Heywood AE; Kunasekaran M; Sheikh M; Narasimhan P; MacIntyre CR, 2018, 'Adherence to anti-vectorial prevention measures among travellers with chikungunya and malaria returning to Australia: Comparative epidemiology', BMC Research Notes, vol. 11, http://dx.doi.org/10.1186/s13104-018-3695-9

Chen C; Beutels P; Wood J; Menzies R; MacIntyre CR; McIntyre P; Newall AT, 2018, 'Retrospective cost-effectiveness of the 23-valent pneumococcal polysaccharide vaccination program in Australia', Vaccine, vol. 36, pp. 6307 - 6313, http://dx.doi.org/10.1016/j.vaccine.2018.08.084

MacIntyre CR; Chughtai AA; Barnes M; Ridda I; Seale H; Toms R; Heywood A, 2018, 'The role of pneumonia and secondary bacterial infection in fatal and serious outcomes of pandemic influenza a(H1N1)pdm09 11 Medical and Health Sciences 1103 Clinical Sciences 11 Medical and Health Sciences 1117 Public Health and Health Services', BMC Infectious Diseases, vol. 18, pp. 637, http://dx.doi.org/10.1186/s12879-018-3548-0

Adam DC; Scotch M; MacIntyre CR, 2018, 'Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes', Molecular Biology and Evolution, vol. 35, pp. msy153 - msy153, http://dx.doi.org/10.1093/molbev/msy153

Dyda A; McIntyre P; Karki S; MacIntyre CR; Newall AT; Banks E; Kaldor J; Liu B, 2018, 'Pertussis vaccination in a cohort of older Australian adults following a cocooning vaccination program', Vaccine, vol. 36, pp. 4157 - 4160, http://dx.doi.org/10.1016/j.vaccine.2018.05.109

Tian Y; Chughtai AA; Gao Z; Yan H; Chen Y; Liu B; Huo D; Jia L; Wang Q; MacIntyre CR, 2018, 'Prevalence and genotypes of group A rotavirus among outpatient children under five years old with diarrhea in Beijing, China, 2011-2016', BMC Infectious Diseases, vol. 18, http://dx.doi.org/10.1186/s12879-018-3411-3

Hii A; Chughtai AA; Housen T; Saketa S; Kunasekaran MP; Sulaiman F; Yanti NS; MacIntyre CR, 2018, 'Epidemic intelligence needs of stakeholders in the Asia-Pacific region', Western Pacific surveillance and response journal : WPSAR, vol. 9, pp. 28 - 36, http://dx.doi.org/10.5365/wpsar.2018.9.2.009

Njoto EN; Scotch M; Bui CM; Adam DC; Chughtai AA; MacIntyre CR, 2018, 'Phylogeography of H5N1 avian influenza virus in Indonesia', Transboundary and Emerging Diseases, vol. 65, pp. 1339 - 1347, http://dx.doi.org/10.1111/tbed.12883

Zhang Y; Muscatello DJ; Wang Q; Yang P; Pan Y; Huo D; Liu Z; Zhao X; Tang Y; Li C; Chughtai AA; Macintyre CR, 2018, 'Hospitalizations for influenza-associatesevere acute respiratory infection, Beijing, China, 2014–2016', Emerging Infectious Diseases, vol. 24, pp. 2098 - 2102, http://dx.doi.org/10.3201/eid2411.171410

Zhang Y; Cao Z; Costantino V; Muscatello DJ; Chughtai AA; Yang P; Wang Q; MacIntyre CR, 2018, 'Influenza illness averted by influenza vaccination among school year children in Beijing, 2013-2016', Influenza and other Respiratory Viruses, vol. 12, pp. 687 - 694, http://dx.doi.org/10.1111/irv.12585

Ajisegiri WS; Chughtai AA; MacIntyre CR, 2018, 'A Risk Analysis Approach to Prioritizing Epidemics: Ebola Virus Disease in West Africa as a Case Study', Risk Analysis, vol. 38, pp. 429 - 441, http://dx.doi.org/10.1111/risa.12876

Haire BG; Komesaroff PA; Leontini R; MacIntyre CR, 2018, 'Raising Rates of Childhood Vaccination: The Trade-off Between Coercion and Trust', Journal of Bioethical Inquiry, vol. 15, pp. 199 - 209, http://dx.doi.org/10.1007/s11673-018-9841-1

Raina MacIntyre C; Engells TE; Scotch M; Heslop DJ; Gumel AB; Poste G; Chen X; Herche W; Steinhöfel K; Lim S; Broom A, 2018, 'Converging and emerging threats to health security', Environment Systems and Decisions, vol. 38, pp. 198 - 207, http://dx.doi.org/10.1007/s10669-017-9667-0

MacIntyre CR; Katelaris AL; Ridda I; Chughtai AA; Moa A; Barnes M; Kabir M; Bradstock K, 2018, 'The immunogenicity of 7-valent pneumococcal conjugate vaccine (PCV7) in adult bone marrow transplant patients', British Journal of Haematology, vol. 181, pp. 860 - 863, http://dx.doi.org/10.1111/bjh.14725


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