By Professor Raina MacIntyre

Journal articles

Quigley A; Chen R; Notaras A; Muluneh AG; Lim S; Chughtai AA; MacIntyre CR, 2026, 'A century of emergence: trends and patterns in human viral pathogens, 1900–2024, a systematic review', BMC Infectious Diseases, 26, http://dx.doi.org/10.1186/s12879-025-12362-8

Kolawole O; Quigley A; Chughtai AA; MacIntyre CR, 2026, 'Early Detection and Surveillance of Infectious Disease Outbreaks in Nigeria : Integrating Nigerian Pidgin English (NPE) into the EPIWATCH® Platform', Journal of Medical Systems, 50, http://dx.doi.org/10.1007/s10916-026-02340-1

Zhang P; MacIntyre CR, 2026, 'An overview of HPAI H5N1 clade 2.3.4.4b and its emerging threat in mainland Australia: Identified knowledge gaps', One Health, 22, http://dx.doi.org/10.1016/j.onehlt.2025.101292

Hutchinson D; Lee L; Stone H; Moa A; Seale H; MacIntyre CR, 2026, 'Comparison of Artificial Intelligence Tools With Human Coding for Sentiment, Topic, and Thematic Analysis Tasks of Public Health Datasets During the COVID-19 Pandemic in Australia: Case Study.', Online J Public Health Inform, 18, pp. e80824, http://dx.doi.org/10.2196/80824

Honeyman DA; Moa A; Muluneh AG; MacIntyre CR, 2026, 'From Reedley to Las Vegas: Illegal Biolabs as a Persistent Community Biosecurity Threat', Global Biosecurity, http://dx.doi.org/10.31646/gbio.362

Honeyman DA; Heslop DJ; MacIntyre CR, 2026, 'The Fall of the Syrian Regime: The End of Chemical Warfare in Syria', Global Biosecurity, http://dx.doi.org/10.31646/gbio.344

Costantino V; Notaras A; MacIntyre CR, 2026, 'Long COVID in children in Australia and the potential impact of vaccination.', Vaccine, 79, pp. 128442, http://dx.doi.org/10.1016/j.vaccine.2026.128442

Zhang P; MacIntyre R; Kunasekaran M; Chughtai A; Bari N, 2026, 'Emergence of HPAI H5N1 Clade 2.3.4.4b in Australia’s Sub-Antarctic Territory: Implications for National Preparedness and Biosecurity', Global Biosecurity, http://dx.doi.org/10.31646/gbio.343

Akhtar Z; Islam MA; Aleem MA; Shuvo TA; Hassan MZ; Asadullah ; Rahman M; Rahman MZ; Hossain ME; Shirin T; Rahman M; Khan Jony MH; Monalisa ; Sarker FR; Alam AN; Rubaid Anwar SNM; Rahman M; Jiamsakul A; Moa AM; Tan TC; Fröbert O; Chowdhury F; MacIntyre CR, 2026, 'COVID-19 vaccination and mortality among coronary care patients with severe acute respiratory infection in Bangladesh: a prospective study (2021–2024)', Lancet Regional Health Southeast Asia, 46, http://dx.doi.org/10.1016/j.lansea.2026.100745

MacIntyre CR; Notaras A; Bari N; Doolan C; Mahmoud MMA; Honeyman D; de Araujo Aquino AFV; Seppelt I; Nicholls M; Turville S; Aggarwal A; Kunasekaran M; Gresham R; Walker G; Sevendal A; Rawlinson W; Emmen IE; O'Connor SL; O'Connor DH; de Silva C, 2026, 'Detection of SARS-CoV-2 in aerosol and surface samples in high acuity hospital settings during community epidemic waves - implications for risk-based infection control', Respiratory Medicine, 253, pp. 108712, http://dx.doi.org/10.1016/j.rmed.2026.108712

Oswin HP; Tellier R; Groth R; Silvonen V; Bull R; MacIntyre CR; de Silva C; Doolan C; Mahmoud MMA; Honeyman D; Seppelt I; Nicholls M; Turville S; Aggarwal A; Kabir KMA; Notaras A; Milton D; Morawska L, 2026, 'Quantification of airborne respiratory microflora provides insights into airborne infection risk', International Journal of Infectious Diseases, 164, http://dx.doi.org/10.1016/j.ijid.2026.108403

Honeyman DA; Heslop DJ; MacIntyre CR, 2026, 'The global epidemiology of botulism outbreaks from open-source intelligence, 2017–2024', American Journal of Emergency Medicine, 101, pp. 71 - 78, http://dx.doi.org/10.1016/j.ajem.2025.12.022

Akhtar Z; Notaras A; Tawfiq E; Kunasekaran M; MacIntyre CR; Rawlinson W; Walker GJ, 2026, 'Epidemiology of respiratory syncytial virus within a New South Wales-based multi-centre health district between 2018 and 2024 in Australia', Pathology, 58, pp. 97 - 102, http://dx.doi.org/10.1016/j.pathol.2025.06.011

Chughtai AA; Kpozehouen E; Seale H; Shah S; Marks GB; MacIntyre CR, 2026, 'Facemask and respirator use for bushfire smoke protection: A cross-country comparison of public health policies in Australia, Canada, India, and the United States', Health Policy, 164, http://dx.doi.org/10.1016/j.healthpol.2025.105510

Muluneh AG; Lim S; Moa A; Maclntyre CR, 2026, 'Geospatial analysis of open-source intelligence data to early detect laboratory-acquired infections, using the 2019 brucellosis laboratory leak in China as a case study', Infection, 54, pp. 331 - 338, http://dx.doi.org/10.1007/s15010-025-02666-x

MacIntyre R; Lim S; Chughtai A; Notaras AE, 2026, 'P-552. Analysis and Spatiotemporal Distribution of Infectious Disease Early Warning Signals During a Major Flooding Event: New South Wales and Queensland 2022 Floods', Open Forum Infectious Diseases, 13, http://dx.doi.org/10.1093/ofid/ofaf695.767

Dhawan S; Pan-Ngum W; MacIntyre CR; Blacksell SD, 2026, 'Epidemiological indicators of accidental laboratory-origin outbreaks', Epidemiology and Infection, 154, http://dx.doi.org/10.1017/S0950268825100915

Dhakal AP; Quigley A; Kalyar F; MacIntyre CR; Chughtai AA, 2026, 'Analysis of Infectious Disease Outbreaks in EPIWATCH® Before and After Including Nepali Language Search Terms', Global Biosecurity, 8, pp. 1 - 13, http://dx.doi.org/10.31646/gbio.333

Honeyman DA; Heslop DJ; Akhtar Z; Lim S; MacIntyre CR, 2026, 'Global patterns of chemical incident reporting from open-source intelligence, 2023–2024', International Journal of Environmental Health Research, http://dx.doi.org/10.1080/09603123.2026.2634946

Biedlingmaier B; Bari N; Quigley A; Chughtai A; Maclntyre CR, 2026, 'Nipah virus outbreak in West Bengal after nearly 20 years.', Global Biosecurity, 8, pp. 1 - 2, http://dx.doi.org/10.31646/gbio.353

Hammoud M; Smith AKJ; Sachs O; Bavinton BR; Holt M; Giles ML; MacGibbon J; Read P; Fairley C; Jin F; Kelleher A; Delpech V; Keane R; MacIntyre R; Grulich AE, 2026, 'Drivers, barriers, and implications of mpox vaccine uptake in Australia among gay, bisexual, and other men who have sex with men: results from a prospective observational mixed-methods study (2022–2024)', Vaccine, 70, pp. 128041 - 128041, http://dx.doi.org/10.1016/j.vaccine.2025.128041

Steinhöfel KK; Heslop D; MacIntyre CR, 2025, 'Agent-Based Models of Virus Infection', Current Clinical Microbiology Reports, 12, http://dx.doi.org/10.1007/s40588-024-00238-5

Notaras A; Lim S; Chughtai AA; MacIntyre CR, 2025, 'Analysis and spatiotemporal distribution of infectious disease early warning signals during a major flooding event: New South Wales and Queensland 2022 floods', Public Health, 249, http://dx.doi.org/10.1016/j.puhe.2025.106013

Ewing AG; Joffe D; Blitshteyn S; Brooks AES; Wist J; Bar-Yam Y; Bilodeau S; Curtin J; Duncan R; Faghy M; Galland L; Pretorius E; Salamon S; Buonsenso D; Hastie C; Kane B; Khan MA; Lal A; Lau D; MacIntyre R; McFarland S; Munblit D; Nicholson J; Ollila HM; Putrino D; Rosario A; Tan T; Zhang J; Zaman A; Wüst R; Wong M; Weisblatt E; Weir W; Waters M; Vivaldi G; Vipond J; Vermeesch A; Venter C; Vaughn J; Trecca E; Tosetti I; Thompson T; Thomas C; Thierry A; Tewolde C; Taylor C; Tate W; Spyridopoulos I; Sinclair B; Shah J; Seagly K; Schenck S; Scheibenbogen C; Šalamon Š; Rydberg L; Ruhoy I; Rosen C; Roncati L; Rodriguez-Morales AJ; Rayner C; Rajenesh A; Raj N; Raina S; Qureshi SP; Puhan M; Proal A; Porter A; Ponting C; Pitzele J; Pidgeon C; Perlowski A; Peers T; Paredes R; Pallanti S; O’Brien K; Owen R; Ong’wen OM; Olivier M; Nova-Lamperti E; Niebauer J; Nauman J; Naik H; Myers B; Miller D; Mera-Cordero F; Mentis AF; Meije Y; Medinger G; Master H; Malcolm S; Madan K; MacIntyre CR; Lloyd-Jones G; Leone J; Leisk J; Laubscher J; Landi F; Labarca G; Kurz K; Kudiersky N, 2025, 'Correction: Long COVID clinical evaluation, research and impact on society: a global expert consensus (Annals of Clinical Microbiology and Antimicrobials, (2025), 24, 1, (27), 10.1186/s12941-025-00793-9)', Annals of Clinical Microbiology and Antimicrobials, 24, http://dx.doi.org/10.1186/s12941-025-00803-w

Ewing AG; Joffe D; Blitshteyn S; Brooks AES; Wist J; Bar-Yam Y; Bilodeau S; Curtin J; Duncan R; Faghy M; Galland L; Pretorius E; Salamon S; Buonsenso D; Hastie C; Kane B; Khan MA; Lal A; Lau D; Macintyre R; McFarland S; Munblit D; Nicholson J; Ollila HM; Putrino D; Rosario A; Tan T; Afrin LB; Moreno CAA; Alwan N; Amaravadi SK; Ashraf H; Morales VA; Atkinson P; Axtell R; Ayuzo C; Azola A; Bagley J; Bagnato S; Banerjee A; Yam YB; Barry J; Bassi-Dibai D; Bhereur A; Bix G; Blanco JR; Bonilla H; Bowers A; Bruyneel M; Yonts AB; Bucker G; Capaccione K; Carroll H; Cathebras P; Chaudhry A; Cheda B; Chia K; Chowdary P; Chung TH; Conner L; Conte C; Dalton C; Darling K; Davies H; Davies K; Davies-Payne D; Deans K; Del Carpio Orantes L; Doherty A; Dowell T; Evans RA; Ewing A; Falcone EL; Fan BE; Fatakhov E; Fearnley K; Fedorowski A; Ferrarese C; Ferraro F; Figtree G; Findlay L; Fortini A; Foschi M; Gagnon F; Gall N; Gerbis N; Ali G; Ghram A; da Silva ALG; Goss H; Grach S; Gregoire C; Groot G; Guana R; Guedj E; Hellemons M; Hoppers M; Hosseini MS; Ingle L; Jarte L, 2025, 'Long COVID clinical evaluation, research and impact on society: a global expert consensus', Annals of Clinical Microbiology and Antimicrobials, 24, http://dx.doi.org/10.1186/s12941-025-00793-9

Berry MT; MacIntyre CR; Cromer D; Hacker A; Davenport MP; Khoury DS, 2025, 'Optimal deployment of limited vaccine supplies to control mpox outbreaks', Npj Vaccines, 10, http://dx.doi.org/10.1038/s41541-025-01289-5

Wiblin S; Feldman C; MacIntyre CR; Soulsby N; van Buynder P; Waterer G, 2025, 'Risk Groups for Vaccine-Preventable Respiratory Infections in Children and Adults: An Overview of the Australian Environment', Vaccines, 13, http://dx.doi.org/10.3390/vaccines13121212

Moa AM; Vargas-Zambrano JC; Maruszak H; Costantino V; MacIntyre CR, 2025, 'The Burden of Pertussis Disease and Vaccination Coverage in Australian Adults Attending Primary Health Care', Vaccines, 13, http://dx.doi.org/10.3390/vaccines13101029

Yeh KB; Bahnfleth WP; Bradforda E; Cardona C; Coleman KK; Hudson PJ; Dadonaite B; Hutchins RJ; Maresso A; Macintyre CR; Scotch M, 2025, 'Three things we can do now to reduce the risk of avian influenza spillovers (vol 122, e2503565122, 2025)', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 122, http://dx.doi.org/10.1073/pnas.2524485122

Anderson CS; Hua C; Wang Z; Wang C; Jiang C; Liu R; Han R; Li Q; Shan S; Billot L; Macintyre CR; Patel A; Zhang H; Ma C; Dong J; Du X, 2025, 'Influenza vaccination to improve outcomes for patients with acute heart failure (PANDA II): a multiregional, seasonal, hospital-based, cluster-randomised, controlled trial in China', Lancet, 406, pp. 1020 - 1031, http://dx.doi.org/10.1016/S0140-6736(25)01485-0

Body A; Lal L; Downie P; Anazodo A; O’Brien T; Padhye B; Fuentes-Bolanos N; Srihari S; Ahern ES; Haber M; Smith C; Lineburg K; Turville S; Naing Z; Rawlinson W; Buttery J; Raina MacIntyre C; Milch V; Segelov E, 2025, 'Immune Response to COVID-19 Vaccination in Children With Cancer', Pediatrics, 156, http://dx.doi.org/10.1542/peds.2024-070209

Akhtar Z; Chowdhury F; Aleem MA; Rahman M; Rahman M; Rahman MZ; Hossain ME; Islam AKMM; Uddin MJ; Moa A; Kabir A; Tan TC; MacIntyre CR; Fröbert O, 2025, 'Incidence of Recurrent Adverse Cardiovascular Events Among Patients With Acute Myocardial Infarction During the First Wave of the COVID-19 Pandemic in Bangladesh: A Prospective Observational Study', Health Science Reports, 8, http://dx.doi.org/10.1002/hsr2.71254

Dhawan S; Muluneh AG; Pan-gnum W; MacIntyre CR; Summermatter K; Blacksell SD, 2025, 'Risk factors and mitigation strategies of laboratory-acquired infections in research and clinical laboratories worldwide: a systematic review', Lancet Microbe, 6, http://dx.doi.org/10.1016/j.lanmic.2025.101157

Yeh KB; Bahnfleth WP; Bradforda E; Cardona C; Coleman KK; Hudson PJ; Dadonaite B; Hutchins RJ; Maresso A; MacIntyre CR; Scotch M, 2025, 'Three things we can do now to reduce the risk of avian influenza spillovers', Proceedings of the National Academy of Sciences of the United States of America, 122, http://dx.doi.org/10.1073/pnas.2503565122

Tabasi M; Najmi A; Miller EJ; MacIntyre CR; Rashidi TH, 2025, 'Effectiveness of vaccination, travel load, and facemask use control strategies for controlling COVID Delta variant: the case of Sydney Metropolitan Area', Transportation, 52, pp. 1709 - 1743, http://dx.doi.org/10.1007/s11116-024-10471-y

Mahmoud MMA; Bahl P; de AFV; Maclntyre CR; Green D; Doolan C; de Silva C, 2025, 'An infection risk model for estimating infection probability and occupancy time: A CFD approach with aerosol measurements', Building and Environment, 279, http://dx.doi.org/10.1016/j.buildenv.2025.113035

Hutchinson D; Moa A; Skouteris H; Ayton D; Tawfiq E; Seale H; MacIntyre CR, 2025, 'Knowledge, Behaviours, and Preferred Information Sources Relating to COVID-19 Mitigation Strategies Among Ethnically Diverse Australians', Asia Pacific Journal of Public Health, 37, pp. 611 - 614, http://dx.doi.org/10.1177/10105395251371252

Tawfiq E; Chen R; Honeyman DA; Dawson R; Kunasekaran M; Notaras A; Gurdasani D; Skouteris H; Ayton D; MacIntyre CR, 2025, 'Long Covid Symptom Clusters, Correlates and Predictors in a Highly Vaccinated Australian Population in 2023', Health Expectations, 28, http://dx.doi.org/10.1111/hex.70273

Strickling M; Zarif N; Nguyen H; Khalaj SM; MacIntyre CR; Packard R; Selvaduray G; Wang Y, 2025, 'A comparison of fit, heat stress, oxygen saturation and comfort between a novel reusable mask and disposable N95 respirator', Plos One, 20, http://dx.doi.org/10.1371/journal.pone.0321538

Akhtar Z; Moa AM; Tan TC; Fröbert O; Menzies R; MacIntyre CR, 2025, 'Prevention of Cardiovascular Diseases with Standard-Dose Quadrivalent Influenza Vaccine in People Aged ≥50 Years in Australia During the 2017 A/H3N2 Epidemic', Vaccines, 13, http://dx.doi.org/10.3390/vaccines13040407

Jindal M; Stone H; Lim S; MacIntyre CR, 2025, 'A Geospatial Perspective Toward the Role of Wild Bird Migrations and Global Poultry Trade in the Spread of Highly Pathogenic Avian Influenza H5N1', Geohealth, 9, http://dx.doi.org/10.1029/2024GH001296

Quigley AL; Kunasekaran M; Stone H; Honeyman D; Notaras A; Lim S; MacIntyre R, 2025, 'The impact of the cruise ship Coral Princess on COVID-19 transmission in regional Western Australia in 2022', Journal of Travel Medicine, 32, http://dx.doi.org/10.1093/jtm/taae044

MacIntyre CR, 2025, 'Thinking globally for pandemic early warning systems: Infectious diseases', Nature Medicine, 31, pp. 731 - 732, http://dx.doi.org/10.1038/s41591-024-03460-2

Body A; Lal L; Srihari S; MacIntyre CR; Buttery J; Ahern ES; Opat S; Leahy MF; Hamad N; Milch V; Turville S; Smith C; Lineburg K; Naing Z; Rawlinson W; Segelov E, 2025, 'Comprehensive humoral and cellular immune responses to COVID-19 vaccination in adults with cancer', Vaccine, 46, http://dx.doi.org/10.1016/j.vaccine.2024.126547

Li X; Ding P; Deng F; Mao Y; Zhou L; Ding C; Wang Y; Luo Y; Zhou Y; MacIntyre CR; Tang S; Xu D; Shi X, 2025, 'Corrigendum to “Wearing time and respiratory volume affect the filtration efficiency of masks against aerosols at different sizes” [Environ. Technol. Innov. 25 (2022) 102165] (Environmental Technology & Innovation (2022) 25, (S2352186421007720), (10.1016/j.eti.2021.102165))', Environmental Technology and Innovation, 37, http://dx.doi.org/10.1016/j.eti.2025.104056

Honeyman D; Gurdasani D; Notaras A; Akhtar Z; Edgeworth J; Moa A; Chughtai AA; Quigley A; Lim S; MacIntyre CR, 2025, 'Global Epidemiology of Outbreaks of Unknown Cause Identified by Open-Source Intelligence, 2020–2022', Emerging Infectious Diseases, 31, pp. 298 - 308, http://dx.doi.org/10.3201/eid3102.240533

Honeyman D; Muluneh AG; Kalyar F; Macintyre CR, 2025, 'Biowarfare scare: Pakistani judges under threat from suspicious substance', Global Biosecurity, 7, http://dx.doi.org/10.31646/gbio.271

Honeyman D; Heslop D; Macintyre CR, 2025, 'Deadly Mass Methanol Poisoning in Laos, 2024', Global Biosecurity, 7, http://dx.doi.org/10.31646/gbio.310

MacIntyre CR; Akhtar Z; Moa A, 2025, 'Corrigendum to “Influenza B/Yamagata - extinct, eradicated or hiding? [Vaccine 42/26 (2024) 126450]” (Vaccine (2025) 44, (S0264410X24011320), (10.1016/j.vaccine.2024.126450))', Vaccine, 44, http://dx.doi.org/10.1016/j.vaccine.2024.126486

MacIntyre CR; Akhtar Z; Moa A, 2025, 'Influenza B/Yamagata cannot currently be declared extinct', Vaccine, 44, http://dx.doi.org/10.1016/j.vaccine.2024.126450

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