Select Publications

Book Chapters

MacIntyre R; Chughtai A, 2017, 'Facemasks and Respirators for the Prevention of Infection in Healthcare and Community Settings', in , CRC Press, pp. 338 - 375

MacIntyre CR; Wood JG; Watkins R; Gao Z, 2011, 'Modeling in Immunization and Biosurveillance Research', in Zeng D; Chen H; CastilloChavez C; Lober WB; Thurmond M (ed.), INFECTIOUS DISEASE INFORMATICS AND BIOSURVEILLANCE, edn. Integrated Series in Information Systems, Springer Science+Business Media, LLC, New York, pp. 259 - 278, http://dx.doi.org/10.1007/978-1-4419-6892-0_12

Williams K; Hayen A; MacIntyre CR; Mellis C, 2004, 'Using evidence to inform decisions', in Moyer VA; Elliot EJ (ed.), Evidence-Based Pediatrics and Child Health with CD-ROM, BMJ Publishing Group, London, pp. 161 - 166, http://dx.doi.org/10.1002/9780470987384.ch17

Journal articles

Adam DC; Scotch M; MacIntyre CR, 2019, 'Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants.', Viruses, vol. 11, http://dx.doi.org/10.3390/v11090791

Raj SM; Chughtai AA; Sharma A; Tan TC; MacIntyre CR, 2019, 'Cost-benefit analysis of a national influenza vaccination program in preventing hospitalisation costs in Australian adults aged 50–64 years old', Vaccine, http://dx.doi.org/10.1016/j.vaccine.2019.08.028

Offner K; Sitnikova E; Joiner K; MacIntyre R, 2019, 'Towards understanding cybersecurity capability in Australian healthcare organisations: A systematic review of recent trends, threats and mitigation', Intelligence and National Security

Bhattacharjee S; Joshi R; Chughtai AA; Macintyre CR, 2019, 'Graphene Modified Multifunctional Personal Protective Clothing', Advanced Materials Interfaces, pp. 1900622 - 1900622, http://dx.doi.org/10.1002/admi.201900622

MacIntyre CR; Shaw PJ; Mackie FE; Boros C; Marshall H; Seale H; Kennedy SE; Moa A; Chughtai AA; Trent M; O'Loughlin EV; Stormon M, 2019, 'Long term follow up of persistence of immunity following quadrivalent Human Papillomavirus (HPV) vaccine in immunocompromised children', Vaccine, vol. 37, pp. 5630 - 5636, http://dx.doi.org/10.1016/j.vaccine.2019.07.072

Trent MJ; Zhang EJ; Chughtai AA; MacIntyre CR, 2019, 'Parental opinions towards the “No Jab, No Pay” policy in Australia', Vaccine, vol. 37, pp. 5250 - 5256, http://dx.doi.org/10.1016/j.vaccine.2019.07.066

Kunasekaran MP; Chen X; Costantino V; Chughtai AA; MacIntyre CR, 2019, 'Evidence for Residual Immunity to Smallpox After Vaccination and Implications for Re-emergence.', Mil Med, http://dx.doi.org/10.1093/milmed/usz181

Moa A; Muscatello D; Chughtai A; Chen X; MacIntyre CR, 2019, 'Flucast: A Real-Time Tool to Predict Severity of an Influenza Season.', JMIR Public Health Surveill, vol. 5, pp. e11780, http://dx.doi.org/10.2196/11780

Dyda A; Karki S; Kong M; Gidding HF; Kaldor JM; McIntyre P; Banks E; MacIntyre CR; Liu B, 2019, 'Influenza vaccination coverage in a population-based cohort of Australian-born Aboriginal and non-Indigenous older adults', COMMUNICABLE DISEASES INTELLIGENCE, vol. 43, http://dx.doi.org/10.33321/cdi.2019.43.30

MacIntyre CR; Ridda I; Trent MJ; McIntyre P, 2019, 'Persistence of immunity to conjugate and polysaccharide pneumococcal vaccines in frail, hospitalised older adults in long-term follow up', Vaccine, vol. 37, pp. 5016 - 5024, http://dx.doi.org/10.1016/j.vaccine.2019.07.005

MacIntyre CR; Costantino V; Kunasekaran MP, 2019, 'Health system capacity in Sydney, Australia in the event of a biological attack with smallpox', PLoS ONE, vol. 14, pp. e0217704 - e0217704, http://dx.doi.org/10.1371/journal.pone.0217704

Chughtai AA; Stelzer-Braid S; Rawlinson W; Pontivivo G; Wang Q; Pan Y; Zhang D; Zhang Y; Li L; MacIntyre CR, 2019, 'Contamination by respiratory viruses on outer surface of medical masks used by hospital healthcare workers', BMC Infectious Diseases, vol. 19, pp. 491, http://dx.doi.org/10.1186/s12879-019-4109-x

Armstrong J; Adam D; Kunasekaran M; MacIntyre R; Nand D; Heslop D, 2019, 'Themes and correlations of participant experience and evaluation of an interactive bioterrorism release exercise – a mixed methods study', Journal of Global Biosecurity, vol. 1

Barnes CE; MacIntyre CR, 2019, 'Risk modelling the mortality impact of antimicrobial resistance in secondary pneumococcal pneumonia infections during the 2009 influenza pandemic', International Journal of Infectious Diseases, vol. 85, pp. 1 - 6, http://dx.doi.org/10.1016/j.ijid.2019.05.005

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Rejoinder', Quality Engineering, vol. 31, pp. 105 - 107, http://dx.doi.org/10.1080/08982112.2018.1547831

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Real-time monitoring of events applied to syndromic surveillance', Quality Engineering, vol. 31, pp. 73 - 90, http://dx.doi.org/10.1080/08982112.2018.1537443

Padmawati RS; Heywood A; Sitaresmi MN; Atthobari J; MacIntyre CR; Soenarto Y; Seale H, 2019, 'Religious and community leaders' acceptance of rotavirus vaccine introduction in Yogyakarta, Indonesia: A qualitative study', BMC Public Health, vol. 19, pp. 368, http://dx.doi.org/10.1186/s12889-019-6706-4

Zhang EJ; Chughtai AA; Heywood A; MacIntyre CR, 2019, 'Influence of political and medical leaders on parental perception of vaccination: A cross-sectional survey in Australia', BMJ Open, vol. 9, http://dx.doi.org/10.1136/bmjopen-2018-025866

Moa AM; Adam DC; MacIntyre CR, 2019, 'Inter-seasonality of influenza in Australia', Influenza and other Respiratory Viruses, vol. 13, pp. 459 - 464, http://dx.doi.org/10.1111/irv.12642

Dirmesropian S; Liu B; Wood JG; MacIntyre CR; McIntyre P; Karki S; Jayasinghe S; Newall AT, 2019, 'Pneumonia hospitalisation and case-fatality rates in older australians with and without risk factors for pneumococcal disease: Implications for vaccine policy', Epidemiology and Infection, vol. 147, pp. e118, http://dx.doi.org/10.1017/S0950268818003473

Joshi A; Karim S; Sparks R; Paris C; MacIntyre R, 2019, 'Survey of Text-based Epidemic Intelligence: A Computational Linguistic Perspective', ACM Computing Surveys

David H; MacIntyre R, 2019, 'Germ line genome editing and the emerging struggle for supremacy in the Chemical, Biological and Radiological (CBR) balance of power', Global Biosecurity, vol. 1, pp. 169 - 173

MacIntyre R; Valentina C; Biswajit M; Devina N; Mohana Priya K; David H, 2019, 'Epidemic size, duration and vaccine stockpiling following a large-scale attack with smallpox', Global Biosecurity, vol. 1, pp. 74 - 81, http://dx.doi.org/10.31646/gbio.13

MacIntyre R; Heslop D; Nand D; Schramm C; Butel M; Rawlinson W; Baker M; Kiedrzynski T; Nelson C; Fotualii L; Yeo K; Elsgaard J; Fonua L; Lane M, 2019, 'Exercise Mataika: White Paper on response to a smallpox bioterrorism release in the Pacific', Journal of Global Biosecurity

Jayasundara D; Hui BB; Regan DG; Heywood AE; MacIntyre CR; Wood JG, 2019, 'Modelling the decline and future of hepatitis A transmission in Australia', Journal of Viral Hepatitis, vol. 26, pp. 199 - 207, http://dx.doi.org/10.1111/jvh.13018

Chen X; Chughtai A; MacIntyre RAINA, 2018, 'Recalibration of the Grunow-Finke Assessment Tool to Improve Performance in Detecting Unnatural Epidemics', Risk Analysis, http://dx.doi.org/10.1111/risa.13255

Hii A; Chughtai AA; Housen T; Saketa S; Kunasekaran MP; Sulaiman F; Yanti NS; MacIntyre CR, 2018, 'Epidemic intelligence needs of stakeholders in the Asia-Pacific region', Western Pacific surveillance and response journal : WPSAR, vol. 9, pp. 28 - 36, http://dx.doi.org/10.5365/wpsar.2018.9.2.009

Chen X; Chughtai A; MacIntyre RAINA, 2018, 'Recalibration of the Grunow-Finke Assessment Tool to Improve Performance in Detecting Unnatural Epidemics', Risk Analysis, http://dx.doi.org/10.1111/risa.13255

MacIntyre CR; Chughtai AA; Barnes M; Ridda I; Seale H; Toms R; Heywood A, 2018, 'The role of pneumonia and secondary bacterial infection in fatal and serious outcomes of pandemic influenza a(H1N1)pdm09 11 Medical and Health Sciences 1103 Clinical Sciences 11 Medical and Health Sciences 1117 Public Health and Health Services', BMC Infectious Diseases, vol. 18, pp. 637, http://dx.doi.org/10.1186/s12879-018-3548-0

Bui CM; Adam DC; Njoto E; Scotch M; MacIntyre CR, 2018, 'Characterising routes of H5N1 and H7N9 spread in China using Bayesian phylogeographical analysis', Emerging microbes & infections, vol. 7, pp. 184, http://dx.doi.org/10.1038/s41426-018-0185-z

Zhang Y; Muscatello DJ; Wang Q; Yang P; Pan Y; Huo D; Liu Z; Zhao X; Tang Y; Li C; Chughtai AA; Macintyre CR, 2018, 'Hospitalizations for influenza-associatesevere acute respiratory infection, Beijing, China, 2014–2016', Emerging Infectious Diseases, vol. 24, pp. 2098 - 2102, http://dx.doi.org/10.3201/eid2411.171410

Tian Y; Chughtai AA; Gao Z; Yan H; Chen Y; Liu B; Huo D; Jia L; Wang Q; MacIntyre CR, 2018, 'Prevalence and genotypes of group A rotavirus among outpatient children under five years old with diarrhea in Beijing, China, 2011-2016', BMC Infectious Diseases, vol. 18, http://dx.doi.org/10.1186/s12879-018-3411-3

Chen C; Beutels P; Wood J; Menzies R; MacIntyre CR; McIntyre P; Newall AT, 2018, 'Retrospective cost-effectiveness of the 23-valent pneumococcal polysaccharide vaccination program in Australia', Vaccine, vol. 36, pp. 6307 - 6313, http://dx.doi.org/10.1016/j.vaccine.2018.08.084

MacIntyre CR; Dyda A; Bui CM; Chughtai AA, 2018, 'Author Response to Comments on “Rolling epidemic of Legionnaires’ disease outbreaks in small geographic areas”', Emerging Microbes and Infections, vol. 7, http://dx.doi.org/10.1038/s41426-018-0150-x

Adam DC; Bui CM; Heywood AE; Kunasekaran M; Sheikh M; Narasimhan P; MacIntyre CR, 2018, 'Adherence to anti-vectorial prevention measures among travellers with chikungunya and malaria returning to Australia: Comparative epidemiology', BMC Research Notes, vol. 11, http://dx.doi.org/10.1186/s13104-018-3695-9

Costantino V; Kunasekaran MP; Chughtai AA; MacIntyre CR, 2018, 'How Valid Are Assumptions about Re-emerging Smallpox? A Systematic Review of Parameters Used in Smallpox Mathematical Models', Military Medicine, vol. 183, pp. e200 - e207, http://dx.doi.org/10.1093/milmed/usx092

Adam DC; Scotch M; MacIntyre CR, 2018, 'Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes', Molecular Biology and Evolution, vol. 35, pp. msy153 - msy153, http://dx.doi.org/10.1093/molbev/msy153

Zhang Y; Cao Z; Costantino V; Muscatello DJ; Chughtai AA; Yang P; Wang Q; MacIntyre CR, 2018, 'Influenza illness averted by influenza vaccination among school year children in Beijing, 2013-2016', Influenza and other Respiratory Viruses, vol. 12, pp. 687 - 694, http://dx.doi.org/10.1111/irv.12585

Chughtai AA; Chen X; Macintyre CR, 2018, 'Risk of self-contamination during doffing of personal protective equipment', American Journal of Infection Control, vol. 46, pp. 1329 - 1334, http://dx.doi.org/10.1016/j.ajic.2018.06.003

Dyda A; McIntyre P; Karki S; MacIntyre CR; Newall AT; Banks E; Kaldor J; Liu B, 2018, 'Pertussis vaccination in a cohort of older Australian adults following a cocooning vaccination program', Vaccine, vol. 36, pp. 4157 - 4160, http://dx.doi.org/10.1016/j.vaccine.2018.05.109

Saha A; Hayen A; Ali M; Rosewell A; MacIntyre CR; Clemens JD; Qadri F, 2018, 'Socioeconomic drivers of vaccine uptake: An analysis of the data of a geographically defined cluster randomized cholera vaccine trial in Bangladesh', Vaccine, vol. 36, pp. 4742 - 4749, http://dx.doi.org/10.1016/j.vaccine.2018.04.084

Njoto EN; Scotch M; Bui CM; Adam DC; Chughtai AA; MacIntyre CR, 2018, 'Phylogeography of H5N1 avian influenza virus in Indonesia', Transboundary and Emerging Diseases, vol. 65, pp. 1339 - 1347, http://dx.doi.org/10.1111/tbed.12883

Haire BG; Komesaroff PA; Leontini R; MacIntyre CR, 2018, 'Raising Rates of Childhood Vaccination: The Trade-off Between Coercion and Trust', Journal of Bioethical Inquiry, vol. 15, pp. 199 - 209, http://dx.doi.org/10.1007/s11673-018-9841-1

MacIntyre CR; Dyda A; Bui CM; Chughtai AA, 2018, 'Rolling epidemic of Legionnaires' disease outbreaks in small geographic areas article', Emerging Microbes and Infections, vol. 7, http://dx.doi.org/10.1038/s41426-018-0051-z

MacIntyre CR; Costantino V; Chen X; Segelov E; Chughtai AA; Kelleher A; Kunasekaran M; Lane JM, 2018, 'Influence of population immunosuppression and past vaccination on smallpox reemergence', Emerging Infectious Diseases, vol. 24, pp. 646 - 653, http://dx.doi.org/10.3201/eid2404.171233

Karki S; Muscatello DJ; Banks E; MacIntyre CR; McIntyre P; Liu B, 2018, 'Association between body mass index and laboratory-confirmed influenza in middle aged and older adults: a prospective cohort study', International Journal of Obesity, vol. 42, pp. 1480 - 1488, http://dx.doi.org/10.1038/s41366-018-0029-x

Ajisegiri WS; Chughtai AA; MacIntyre CR, 2018, 'A Risk Analysis Approach to Prioritizing Epidemics: Ebola Virus Disease in West Africa as a Case Study', Risk Analysis, vol. 38, pp. 429 - 441, http://dx.doi.org/10.1111/risa.12876


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