By Associate Professor Jason Dowling

Conference Papers

Bell LR; Dowling JA; Pogson EM; Metcalfe P; Holloway L, 2016, 'Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast', in Baldock C; Rozenfeld A; Metcalfe P (eds.), Journal of Physics Conference Series, IOP Publishing, AUSTRALIA, Tasmania, pp. 012002, presented at Conference on Micro-Mini and Nano-Dosimetry and Innovative Technologies in Radiation Therapy (MMND and ITRO), AUSTRALIA, Tasmania, 26 January 2016 - 28 January 2016, http://dx.doi.org/10.1088/1742-6596/777/1/012002

, 2016, 'EPSM 2016, Engineering and Physical Sciences in Medicine', in Physical and Engineering Sciences in Medicine, Springer Nature, pp. 1045 - 1190, http://dx.doi.org/10.1007/s13246-016-0494-2

Greer PB; Dowling J; Rivest-Henault D; Ghose S; Pichler P; Sun J; Richardson H; Menk F; Martin J; Wratten C, 2015, 'Generation of density maps for dose calculations from MRI using atlas methods', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S11 - S12, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000688178300042&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ghose S; Mitra J; Khanna S; Dowling J, 2015, 'An Improved Patient-Specific Mortality Risk Prediction in ICU in a Random Forest Classification Framework', in Studies in Health Technology and Informatics, pp. 56 - 61, http://dx.doi.org/10.3233/978-1-61499-558-6-56

Ghose S; Mitra J; Karunanithi M; Dowling J, 2015, 'Human Activity Recognition from Smart-Phone Sensor Data using a Multi-Class Ensemble Learning in Home Monitoring', in Studies in Health Technology and Informatics, pp. 62 - 67, http://dx.doi.org/10.3233/978-1-61499-558-6-62

Dowling JA; Burdett N; Greer PB; Sun J; Parker J; Pichler P; Stanwell P; Chandra S; Rivest-Hénault D; Ghose S; Salvado O; Fripp J, 2014, 'Automatic Atlas Based Electron Density and Structure Contouring for MRI-based Prostate Radiation Therapy on the Cloud', in Journal of Physics Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012048

Dowling J; Pichler P; Sun J; Rivest-Henault D; Ghose S; Martin J; Wratten C; Stanwell P; Fripp J; Greer P, 2014, 'CT substitute derived from MRI for external beam prostate radiotherapy', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S135 - S135, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000688272900341&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Dowling J; Dang K; Fox CD; Chandra S; Gill S; Kron T; Pham D; Foroudi F, 2014, 'Fast cine-magnetic resonance imaging point tracking for prostate cancer radiation therapy planning', in Journal of Physics Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012027

Rivest-Hénault D; Ghose S; Pluim JPW; Greer PB; Fripp J; Dowling JA, 2014, 'Fast multiatlas selection using composition of transformations for radiation therapy planning', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 105 - 115, http://dx.doi.org/10.1007/978-3-319-13972-2_10

Rivest-Hénault D; Dowson N; Greer P; Dowling J, 2014, 'Inverse-consistent rigid registration of CT and MR for MR-based planning and adaptive prostate radiation therapy', in Journal of Physics Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012039

Rivest-Hénault D; Greer P; Fripp J; Dowling J, 2014, 'Structure-guided nonrigid registration of CT-MR pelvis scans with large deformations in MR-based image guided radiation therapy', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 65 - 73, http://dx.doi.org/10.1007/978-3-319-05666-1_9

Ghose S; Denham J; Ebert M; Kennedy A; Mitra J; Rose S; Dowling J, 2013, 'Multi-atlas and Gaussian mixture modeling based perirectal fat segmentation from CT images', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 194 - 202, http://dx.doi.org/10.1007/978-3-642-41083-3_22

Dimigen M; Vinod S; Borok N; Holloway L; Dowling J; Lim K, 2012, 'The Use of Cervical Cancer MRI Contouring Guidelines in Clinical Practice', in INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, ELSEVIER SCIENCE INC, MA, Boston, pp. S433 - S433, presented at 54th Annual Meeting of the American-Society-for-Radiation-Oncology (ASTRO), MA, Boston, 28 October 2012 - 31 October 2012, http://dx.doi.org/10.1016/j.ijrobp.2012.07.1147

Whelan B; Kumar S; Dowling J; Lambert J; Lim K; Salvado O; Begg J; Greer P; Vinod S; Holloway L, 2012, 'Requirements for the Accuracy of Electron Density Data Planning for MRI Based Cervix Cancer Treatment Planning', in MEDICAL PHYSICS, AMER ASSOC PHYSICISTS MEDICINE AMER INST PHYSICS, NC, Charlotte, pp. 3694 - 3694, presented at 54th Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), NC, Charlotte, 29 July 2012 - 02 August 2012, http://dx.doi.org/10.1118/1.4735020

Whelan B; Pant N; Dowling J; Lambert J; Lim K; Salvado O; Begg J; Greer P; Vinod SK; Holloway L, 2012, 'Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning', in Medical Physics, American Association Physicists Medicine American Inst P, Melville, NY, USA, pp. 39 (6):3694-3694; JUN 2012, presented at 55th Annual Meeting of the American Association of Physicists in Medicine, http://dx.doi.org/10.1118/1.4735020

Chandra S; Dowling J; Shen K; Pluim J; Greer P; Salvado O; Fripp J, 2011, 'Automatic segmentation of the prostate in 3D magnetic resonance images using case specific deformable models', in Proceedings 2011 International Conference on Digital Image Computing Techniques and Applications Dicta 2011, pp. 7 - 12, http://dx.doi.org/10.1109/DICTA.2011.10

Dowling JA; Fripp J; Chandra S; Pluim JPW; Lambert J; Parker J; Denham J; Greer PB; Salvado O, 2011, 'Fast automatic multi-atlas segmentation of the prostate from 3D MR images', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 10 - 21, http://dx.doi.org/10.1007/978-3-642-23944-1_2

Lambert J; Dowling J; Menk F; Parker J; Capp A; Denham J; Salvado O; Greer PB, 2011, 'SU‐D‐110‐05: MR‐Based Dose Calculation for Prostate Radiotherapy Using Atlas‐ Based Auto‐Segmentation', in Medical Physics, pp. 3387 - 3388, http://dx.doi.org/10.1118/1.3611541

Tomaszewski JE, 2010, 'HistoCAD: Machine Facilitated Quantitative Histoimaging with Computer Assisted Diagnosis', in Madabhushi A; Dowling J; Yan PK; Fenster A; Abolmaesumi P; Hata N (eds.), PROSTATE CANCER IMAGING: COMPUTER-AIDED DIAGNOSIS, PROGNOSIS, AND INTERVENTION, SPRINGER-VERLAG BERLIN, PEOPLES R CHINA, Beijing, pp. 63 - 65, presented at International Workshop on Prostate Cancer Imaging, PEOPLES R CHINA, Beijing, 24 September 2010, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000286796700008&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Futterer JJ, 2010, 'Prostate Cancer MR Imaging', in Madabhushi A; Dowling J; Yan PK; Fenster A; Abolmaesumi P; Hata N (eds.), PROSTATE CANCER IMAGING: COMPUTER-AIDED DIAGNOSIS, PROGNOSIS, AND INTERVENTION, SPRINGER-VERLAG BERLIN, PEOPLES R CHINA, Beijing, pp. 1 - 3, presented at International Workshop on Prostate Cancer Imaging, PEOPLES R CHINA, Beijing, 24 September 2010, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000286796700001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Acosta O; Dowling J; Cazoulat G; Simon A; Salvado O; De Crevoisier R; Haigron P, 2010, 'Atlas based segmentation and mapping of organs at risk from planning CT for the development of voxel-wise predictive models of toxicity in prostate radiotherapy', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 42 - 51, http://dx.doi.org/10.1007/978-3-642-15989-3_6

Dowling J; Lambert J; Parker J; Greer PB; Fripp J; Denham J; Ourselin S; Salvado O, 2010, 'Automatic MRI atlas-based external beam radiation therapy treatment planning for prostate cancer', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 25 - 33, http://dx.doi.org/10.1007/978-3-642-15989-3_4

Dowling J; Lambert J; Parker J; Fripp J; Denham JW; Wratten C; Capp A; Tang C; Bourgeat P; Salvado O; Greer PB, 2010, 'Sci—Sat AM(1): Planning — 05: Feasibility of Atlas‐Based Organ Segmentation and Electron Density Mapping for MRI‐Based Prostate Radiation Therapy Planning', in Medical Physics, pp. 3907, http://dx.doi.org/10.1118/1.3476205

Dowling J; Bourgeat P; Raffelt D; Fripp J; Greer PB; Patterson J; Denham J; Gupta S; Tang C; Stanwell P; Ourselin S; Salvado O, 2009, 'Nonrigid correction of interleaving artefacts in pelvic MRI', in Progress in Biomedical Optics and Imaging Proceedings of SPIE, http://dx.doi.org/10.1117/12.812460

Dowling J; Planitz BM; Maeder AJ; Du J; Pham B; Boyd C; Chen S; Bradley AP; Crozier S, 2008, 'A comparison of DCT and DWT block based watermarking on medical image quality', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 454 - 466, http://dx.doi.org/10.1007/978-3-540-92238-4_35

Maeder A; Dowling J; Nguyen A; Brunton E; Nguyen P, 2008, 'Assuring authenticity of digital mammograms by image watermarking', in Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, pp. 204 - 211, http://dx.doi.org/10.1007/978-3-540-70538-3_29

Dowling JA; Planitz BM; Maeder AJ; Jiang D; Pham B; Boyd C; Shaokang C; Bradley AP; Crozier S, 2007, 'Visual quality assessment of watermarked medical images', in Progress in Biomedical Optics and Imaging Proceedings of SPIE, http://dx.doi.org/10.1117/12.707571

Dowling J; Boles W; Maeder A, 2006, 'A display framework for presenting information from a visual prosthesis', in 13th Annual International Conference on Mechatronics and Machine Vision in Practice 2006, pp. 230 - 235

Dowling J; Boles W; Maeder A, 2006, 'Simulated Artificial Human Vision: The Effects of Spatial Resolution and Frame Rate on Mobility', in Frontiers in Artificial Intelligence and Applications, pp. 138 - 143

Dowling J; Boles W; Maeder A, 2005, 'Mobility assessment using simulated Artificial Human Vision', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, http://dx.doi.org/10.1109/CVPR.2005.494

Dowling J; Maeder A; Boles W, 2004, 'Mobility enhancement and assessment for a visual prosthesis', in Proceedings of SPIE the International Society for Optical Engineering, pp. 780 - 791, http://dx.doi.org/10.1117/12.534866

Conference Presentations

Chin V; Finnegan RN; Chlap P; Otton J; Haidar A; Delaney GP; Holloway L; Thwaites DI; Dowling J; Vinod SK, 2022, 'MO-0889 Validation and clinical impact of a novel hybrid cardiac substructure automatic segmentation method', http://dx.doi.org/10.1016/s0167-8140(22)02455-0

Conference Abstracts

Otton J; Belous G; Finnegan R; Dowling J, 2022, '407 A Novel Machine Learning Technique For Detecting Cardiac Substructures In Computed Tomography', in Journal of Cardiovascular Computed Tomography, Elsevier, Vol. 16, pp. s4, http://dx.doi.org/10.1016/j.jcct.2022.06.012

Finnegan R; Chin V; Chlap P; Haidar A; Otton J; Dowling J; Thwaites D; Vinod S; Delaney G; Holloway L, 2022, 'OC-0756 Development and implementation of a hybrid method for automatic cardiac substructure segmentation', in Radiotherapy and Oncology, Elsevier, Vol. 170, pp. s670 - s672, http://dx.doi.org/10.1016/s0167-8140(22)02662-7

Finnegan R; Otton J; Dowling J, 2021, 'Machine learning analysis of chest CT to detect cardiac abnormalities in COVID19', in EUROPEAN HEART JOURNAL, OXFORD UNIV PRESS, Vol. 42, pp. 170 - 170, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000720456900125&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Finnegan R; Reynolds H; Sun Y; Ebert M; Holloway L; Sykes J; Dowling J; Haworth A, 2021, 'A three-dimensional computational model of prostate cancer biology', in ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY, WILEY, Vol. 17, pp. 17 - 18

Chin RI; Chen K; Abraham CD; Robinson CG; Perkins SM; Johanns TM; Hernandez-Aya LF; Keller JW; Dowling J; Rich K; Chicoine M; Kim AH; Dunn GP; Ansstas G; Huang J, 2021, 'Brain Metastases in Metastatic Cutaneous Melanoma: Patterns of Care and Clinical Outcomes in the Era of Immunotherapy and Targeted Therapy', in International Journal of Radiation Oncology • Biology • Physics, Elsevier, Vol. 111, pp. e565 - e566, http://dx.doi.org/10.1016/j.ijrobp.2021.07.1528

Greer P; Skehan K; Goodwin J; Dowling J; Choi JH; Sidhom M; Wilton L; Smart J; Afinidad T; Martin J, 2019, 'A Multi-Centre Study of MRI-Only Prostate Radiation Therapy Planning: A NINJA Trial Sub-Study', in ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY, WILEY, Vol. 15, pp. 23 - 23, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000493746400020&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Choi J; Lee D; Dowling J; OConnor L; Pichler P; Greer P, 2019, 'Bulk Anatomical Density Maps for Quality Assurance in MRI-Only Prostate Treatment Planning', in MEDICAL PHYSICS, WILEY, TX, San Antonio, Vol. 46, pp. E318 - E318, presented at Annual Meeting of the American-Association-of-Physicists-in-Medicine (AAPM), TX, San Antonio, 14 July 2019 - 18 July 2019

Finnegan R; Lorenzen E; Dowling J; Holloway L; Thwaites D; Brink C, 2019, 'Dosimetric Validation of Automatic Cardiac and Coronary Artery Segmentation in Breast Radiotherapy', in MEDICAL PHYSICS, WILEY, TX, San Antonio, Vol. 46, pp. E138 - E138, presented at 61st Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), TX, San Antonio, 14 July 2019 - 18 July 2019

Marcello M; Kennedy A; Haworth A; Holloway L; Dowling J; Greer P; Gulliford S; Dearnaley D; Sydes M; Hall E; Denham J; Ebert M, 2019, 'External Validation of 3D Spatial Dose-Response Mapping for Toxicity Subsequent to Pelvic Radiotherapy', in MEDICAL PHYSICS, WILEY, TX, San Antonio, Vol. 46, pp. E314 - E314, presented at Annual Meeting of the American-Association-of-Physicists-in-Medicine (AAPM), TX, San Antonio, 14 July 2019 - 18 July 2019

Finnegan R; Dowling J; Brink C; Thwaites D; Lorenzen E; Holloway L, 2019, 'Uncertainty in Segmentation: Application to Iterative Atlas Selection', in MEDICAL PHYSICS, WILEY, TX, San Antonio, Vol. 46, pp. E139 - E139, presented at 61st Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), TX, San Antonio, 14 July 2019 - 18 July 2019

Greer P; Pichler P; Young T; Martin J; Hunter P; Wratten C; Denham J; Holloway L; Sidhom M; Dowling J, 2019, 'A multi-centre study for implementation of MRI-only prostate planning', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, ITALY, Milan, Vol. 133, pp. S224 - S225, presented at 38th Annual Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), ITALY, Milan, 26 April 2019 - 30 April 2019, http://dx.doi.org/10.1016/S0167-8140(19)30848-5

Largent A; Barateau A; Nunes J; Lafond C; Greer PB; Dowling JA; Saint-Jalmes H; Acosta O; De Crevoisier R, 2019, 'PO-1007 Comparison of deep learning with three other methods to generate pseudo-CT for MRI-only radiotherapy', in Radiotherapy and Oncology, Elsevier, Vol. 133, pp. s555 - s556, http://dx.doi.org/10.1016/s0167-8140(19)31427-6

Finnegan RN; Dowling JA; Holloway L; Otton J; Koh ES; Luo C; Satchithanandha A; Atluri P; Tang S; Delaney GP; Batumalai V; Thwaites DI, 2018, 'EP-2127: Feasibility of Automatic Multi-Atlas Based Cardiac Segmentation in Planning CT', in Radiotherapy and Oncology, Elsevier, Vol. 127, pp. s1171 - s1172, http://dx.doi.org/10.1016/s0167-8140(18)32436-8

Preprints

Chlap P; Lee M; Leong T; Field M; Dowling J; Min H; Chu J; Tan J; Tran PK; Kron T; Haworth A; Ebert MA; Vinod SK; Holloway L, 2026, Improving Clinical Target Volume Segmentation Accuracy using Anatomical Priors and Active Learning for the AGITG TOPGEAR Clinical Trial

Nicolson A; Cooper EJ; Yoon H-J; McCafferty C; Krishnan R; Craigie M; Saad N; Dowling J; Scott IA; Koopman B, 2026, CXRMate-2: Structured Multimodal Temporal Embeddings and Tractable Reinforcement Learning for Clinically Acceptable Chest X-ray Radiology Report Generation, http://dx.doi.org/10.48550/arxiv.2604.18967

Xin B; Hickey R; Blake T; Jin J; Wainwright CE; Benkert T; Stemmer A; Sly P; Coman D; Dowling J, 2025, Artificial Intelligence-assisted Pixel-level Lung (APL) Scoring for Fast and Accurate Quantification in Ultra-short Echo-time MRI, http://dx.doi.org/10.48550/arxiv.2506.23506

Boussot V; Hémon C; Nunes J-C; Dowling J; Rouzé S; Lafond C; Barateau A; Dillenseger J-L, 2025, IMPACT: A Generic Semantic Loss for Multimodal Medical Image Registration, http://dx.doi.org/10.48550/arxiv.2503.24121

Lynch M; Manoy S; Sly PD; Wainwright C; Wolvetang E; Feenstra J; Dowling J; Ware RS; Patel M; Hermith-Ramirez D; Vogel AP; Preece K; Zappala T; Dai S; Webber A; Yeo A; Sunramanian G; Rao G; Ma CS; Jose S; Gatei M; Xin B; Sandona N; Lewindon P; Sinclair K; Nayler S; Lavin MF; Coman D, 2025, Ataxia-Telangiectasia: Treating Mitochondrial Dysfunction with a Novel Form of Anaplerosis (A-TC7), http://dx.doi.org/10.2139/ssrn.5099303

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