By Associate Professor Yang Song

Conference Papers

Tareef A; Song Y; Cai W; Feng DD; Chen M, 2014, 'Automated three-stage nucleus and cytoplasm segmentation of overlapping cells', in 2014 13th International Conference on Control Automation Robotics and Vision, ICARCV 2014, pp. 865 - 870, http://dx.doi.org/10.1109/ICARCV.2014.7064418

Song Y; Cail W; Huang H; Zhou Y; Feng DDA; Chen M, 2014, 'Large margin aggregation of local estimates for medical image classification', in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 196 - 203

Zhang F; Song Y; Cai W; Zhou Y; Shan S; Feng D, 2013, 'Context curves for classification of lung nodule images', in 2013 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2013, http://dx.doi.org/10.1109/DICTA.2013.6691494

Lu S; Wang Z; Song Y; Mei T; Feng DD, 2013, 'A bag-of-importance model for video summarization', in Electronic Proceedings of the 2013 IEEE International Conference on Multimedia and Expo Workshops, ICMEW 2013, http://dx.doi.org/10.1109/ICMEW.2013.6618454

Song Y; Cai W; Feng DD; Chen M, 2013, 'Cell nuclei segmentation in fluorescence microscopy images using inter- and intra-region discriminative information', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 6087 - 6090, http://dx.doi.org/10.1109/EMBC.2013.6610941

Lee MZ; Cai W; Song Y; Selvadurai H; Feng DD, 2013, 'Fully automated scoring of chest radiographs in cystic fibrosis', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 3965 - 3968, http://dx.doi.org/10.1109/EMBC.2013.6610413

Liu S; Cai W; Song Y; Pujol S; Kikinis R; Wen L; Feng DD, 2013, 'Localized Sparse Code Gradient in Alzheimer's disease staging', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 5398 - 5401, http://dx.doi.org/10.1109/EMBC.2013.6610769

Zhang F; Cai W; Song Y; Lee MZ; Shan S; Dagan D, 2013, 'Overlapping node discovery for improving classification of lung nodules', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 5461 - 5464, http://dx.doi.org/10.1109/EMBC.2013.6610785

Song Y; Cai W; Huh S; Chen M; Kanade T; Zhou Y; Feng D, 2013, 'Discriminative data transform for image feature extraction and classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 452 - 459, http://dx.doi.org/10.1007/978-3-642-40763-5_56

Liu S; Song Y; Cai W; Pujol S; Kikinis R; Wang X; Feng D, 2013, 'Multifold Bayesian kernelization in Alzheimer's diagnosis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 303 - 310, http://dx.doi.org/10.1007/978-3-642-40763-5_38

Song Y; Cai W; Huang H; Wang X; Eberl S; Fulham M; Feng D, 2013, 'Similarity guided feature labeling for lesion detection', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 284 - 291, http://dx.doi.org/10.1007/978-3-642-40811-3_36

Song Y; Cai W; Zhou Y; Wen L; Feng DD, 2013, 'Pathology-centric medical image retrieval with hierarchical contextual spatial descriptor', in Proceedings - International Symposium on Biomedical Imaging, pp. 198 - 201, http://dx.doi.org/10.1109/ISBI.2013.6556446

Song Y; Cai W; Huang H; Wang Y; Feng DD, 2013, 'Context enhanced graphical model for object localization in medical images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 194 - 205, http://dx.doi.org/10.1007/978-3-642-36620-8_19

Liu S; Zhang L; Cai W; Song Y; Wang Z; Wen L; Feng DD, 2013, 'A supervised multiview spectral embedding method for neuroimaging classification', in 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings, pp. 601 - 605, http://dx.doi.org/10.1109/ICIP.2013.6738124

Zhang L; Liu S; Wang Z; Cai W; Song Y; Feng DD, 2013, 'Graph cuts based relevance feedback in image retrieval', in 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings, pp. 4358 - 4362, http://dx.doi.org/10.1109/ICIP.2013.6738898

Song Y; Cai W; Feng DD, 2012, 'Microscopic image segmentation with two-level enhancement of feature discriminability', in 2012 International Conference on Digital Image Computing Techniques and Applications, DICTA 2012, http://dx.doi.org/10.1109/DICTA.2012.6411682

Song Y; Cai W; Huang H; Wang Y; Feng DD, 2012, 'Object localization in medical images based on graphical model with contrast and interest-region terms', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 1 - 7, http://dx.doi.org/10.1109/CVPRW.2012.6239240

Song Y; Cai W; Feng DD, 2012, 'Global context inference for adaptive abnormality detection in PET-CT images', in Proceedings - International Symposium on Biomedical Imaging, pp. 482 - 485, http://dx.doi.org/10.1109/ISBI.2012.6235589

Song Y; Cai W; Wang Y; Feng DD, 2012, 'Location classification of lung nodules with optimized graph construction', in Proceedings - International Symposium on Biomedical Imaging, pp. 1439 - 1442, http://dx.doi.org/10.1109/ISBI.2012.6235841

Cai W; Song Y; Feng DD, 2012, 'Regression and classification based distance metric learning for medical image retrieval', in Proceedings - International Symposium on Biomedical Imaging, pp. 1775 - 1778, http://dx.doi.org/10.1109/ISBI.2012.6235925

Song Y; Cai W; Zhou Y; Feng D, 2012, 'Thoracic abnormality detection with data adaptive structure estimation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 74 - 81, http://dx.doi.org/10.1007/978-3-642-33415-3_10

Song Y; Cai W; Eberl S; Fulham MJ; Feng DD, 2011, 'Thoracic image matching with appearance and spatial distribution', in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 4469 - 4472, http://dx.doi.org/10.1109/IEMBS.2011.6091108

Song Y; Cai W; Feng DD, 2011, 'Hierarchical spatial matching for medical image retrieval', in MM'11 - Proceedings of the 2011 ACM Multimedia Conference and Co-Located Workshops - 2011 ACM International Workshop on Medical Multimedia Analysis and Retrieval, MMAR'11, pp. 1 - 6, http://dx.doi.org/10.1145/2072545.2072547

Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Thoracic image case retrieval with spatial and contextual information', in Proceedings - International Symposium on Biomedical Imaging, pp. 1885 - 1888, http://dx.doi.org/10.1109/ISBI.2011.5872776

Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Discriminative pathological context detection in thoracic images based on multi-level inference', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 191 - 198, http://dx.doi.org/10.1007/978-3-642-23626-6_24

Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2011, 'Region and learning based retrieval for multi-modality medical images', in Proceedings of the 8th IASTED International Conference on Biomedical Engineering, Biomed 2011, pp. 343 - 350, http://dx.doi.org/10.2316/P.2011.723-063

Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2010, 'A content-based image retrieval framework for multi-modality lung images', in Proceedings - IEEE Symposium on Computer-Based Medical Systems, pp. 285 - 290, http://dx.doi.org/10.1109/CBMS.2010.6042657

Song Y; Cai W; Eberl S; Fulham MJ; Feng D, 2010, 'Structure-adaptive feature extraction and representation for multi-modality lung images retrieval', in Proceedings - 2010 Digital Image Computing: Techniques and Applications, DICTA 2010, pp. 152 - 157, http://dx.doi.org/10.1109/DICTA.2010.37

Conference Presentations

Thurow S; Del Favero D; Frohne U; Moinuddin K; Sharma A; Song Y, 2023, 'Re-Imagining the Climate Emergency Using AI Visualisation', presented at RE:SOURCE – 10th International Conference on the Histories of Media Art, Science & Technology, Venice Centre for Digital & Public Humanities, Università Ca’Foscari Venice, Italy, 13 September 2023 - 16 September 2023, https://www.resource-media.art/

Conference Abstracts

Del Favero D; Song Y; Moinuddin K; Green C; Sharples J; Ong A; Brohier N, 2023, 'Penumbra2.0', in ACM SIGGRAPH Asia 2023 Art Gallery, ACM, pp. 1 - 2, presented at SA Art Gallery '23: ACM SIGGRAPH Asia 2023 Art Gallery, http://dx.doi.org/10.1145/3610537.3622946

Song Y; Cai W; Zhou Y; Fulham M; Feng D, 2014, 'Volume-of-interest retrieval for PET-CT images with a conditional random field alignment', in JOURNAL OF NUCLEAR MEDICINE, SOC NUCLEAR MEDICINE INC, MO, St Louis, Vol. 55, presented at Annual Meeting of the Society-of-Nuclear-Medicine-and-Molecular-Imaging (SNMMI), MO, St Louis, 07 June 2014 - 11 June 2014, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000361438103236&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Working Papers

Rana P; Sowmya A; Meijering E; Song Y, 2020, Estimation of Three-Dimensional Chromatin Morphology for Nuclear Classification and Characterisation, http://dx.doi.org10.1101/2020.07.29.226498

Creative Works (non-textual)

Del Favero D; Brohier N; Ong A; Clemente L; Sharples J; Song Y; Green C; Moinuddin K; Ong A, 2023, Penumbra 2.0, Viscera, Cavallerizza Reale (Turin, Italy), 13 September 2023 - 14 October 2023, medium: Computer-Graphic Installation, at: https://recontemporary.com/en/mostre/dennis-del-favero-viscera-2/

Del Favero D; Thurow S; Tirado Cortes C; Ong A; Brohier N; Helsby-Clark N; Song Y; Sharples J, 2022, Penumbra 1.0, Düsseldorf Cologne Open, Galerie Brigitte Schenk, Cologne, Germany, 02 September 2022 - 06 December 2022, medium: single channel video, at: https://www.dc-open.de/venues/galerie-brigitte-schenk

Preprints

Jin Q; Cui H; Sun C; Song Y; Zheng J; Cao L; Wei L; Su R, 2024, Inter- and intra-uncertainty based feature aggregation model for semi-supervised histopathology image segmentation, http://dx.doi.org/10.48550/arxiv.2403.12767

Fan L; Ding Y; Fan D; Wu Y; Chu H; Pagnucco M; Song Y, 2023, An annotated grain kernel image database for visual quality inspection, http://dx.doi.org/10.48550/arxiv.2401.08599

Fan L; Ding Y; Fan D; Wu Y; Pagnucco M; Song Y, 2023, Identifying the Defective: Detecting Damaged Grains for Cereal Appearance Inspection, http://dx.doi.org/10.48550/arxiv.2311.11901

Chen Y; Zekelman LR; Zhang C; Xue T; Song Y; Makris N; Rathi Y; Golby AJ; Cai W; Zhang F; O'Donnell LJ, 2023, TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance, http://dx.doi.org/10.48550/arxiv.2307.03982

Huang R; Xue H; Pagnucco M; Salim F; Song Y, 2023, Multimodal Trajectory Prediction: A Survey, http://dx.doi.org/10.48550/arxiv.2302.10463

Chen Y; Zhang F; Zekelman LR; Xue T; Zhang C; Song Y; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2023, TractGraphCNN: anatomically informed graph CNN for classification using diffusion MRI tractography, http://dx.doi.org/10.48550/arxiv.2301.01911

Rana P; Sowmya A; Meijering E; Song Y, 2022, Imbalanced classification for protein subcellular localisation with multilabel oversampling, http://dx.doi.org/10.1101/2022.09.12.507675

Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification, http://dx.doi.org/10.1101/2022.08.30.505762

Xue T; Zhang F; Zhang C; Chen Y; Song Y; Golby AJ; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2022, Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions, http://dx.doi.org/10.48550/arxiv.2207.08975

Chen Y; Zhang F; Zhang C; Xue T; Zekelman LR; He J; Song Y; Makris N; Rathi Y; Golby AJ; Cai W; O'Donnell LJ, 2022, White Matter Tracts are Point Clouds: Neuropsychological Score Prediction and Critical Region Localization via Geometric Deep Learning, http://dx.doi.org/10.48550/arxiv.2207.02402

Rana P; Sowmya A; Meijering E; Song Y, 2022, Data augmentation for imbalanced blood cell image classification, http://dx.doi.org/10.21203/rs.3.rs-1645828/v1

Chen Y; Zhang C; Xue T; Song Y; Makris N; Rathi Y; Cai W; Zhang F; O'Donnell LJ, 2022, Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation, http://dx.doi.org/10.48550/arxiv.2205.00627

Fan L; Ding Y; Fan D; Di D; Pagnucco M; Song Y, 2022, GrainSpace: A Large-scale Dataset for Fine-grained and Domain-adaptive Recognition of Cereal Grains, http://dx.doi.org/10.48550/arxiv.2203.05306

Xue T; Zhang F; Zhang C; Chen Y; Song Y; Makris N; Rathi Y; Cai W; O'Donnell LJ, 2022, SupWMA: Consistent and Efficient Tractography Parcellation of Superficial White Matter with Deep Learning, http://dx.doi.org/10.48550/arxiv.2201.12528

Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), http://dx.doi.org/10.1101/2022.05.10.491423

Wang H; Zhang C; Yu J; Song Y; Liu S; Chrzanowski W; Cai W, 2021, Voxel-wise Cross-Volume Representation Learning for 3D Neuron Reconstruction, http://dx.doi.org/10.48550/arxiv.2108.06522

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