By Associate Professor Yang Song

Journal articles

Xiang T; Zhang C; Wang X; Song Y; Liu D; Huang H; Cai W, 2022, 'Towards bi-directional skip connections in encoder-decoder architectures and beyond', Medical Image Analysis, 78, http://dx.doi.org/10.1016/j.media.2022.102420

Zhu J; Bolsterlee B; Chow BVY; Cai C; Herbert RD; Song Y; Meijering E, 2021, 'Deep learning methods for automatic segmentation of lower leg muscles and bones from MRI scans of children with and without cerebral palsy', NMR in Biomedicine, 34, http://dx.doi.org/10.1002/nbm.4609

Rana P; Sowmya A; Meijering E; Song Y, 2021, 'Estimation of three-dimensional chromatin morphology for nuclear classification and characterisation', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-021-82985-9

Liu D; Zhang D; Song Y; Huang H; Cai W, 2021, 'Panoptic Feature Fusion Net: A Novel Instance Segmentation Paradigm for Biomedical and Biological Images', IEEE Transactions on Image Processing, 30, pp. 2045 - 2059, http://dx.doi.org/10.1109/TIP.2021.3050668

Liu D; Zhang D; Song Y; Zhang F; O'Donnell L; Huang H; Chen M; Cai W, 2021, 'PDAM: A Panoptic-Level Feature Alignment Framework for Unsupervised Domain Adaptive Instance Segmentation in Microscopy Images', IEEE Transactions on Medical Imaging, 40, pp. 154 - 165, http://dx.doi.org/10.1109/TMI.2020.3023466

Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2020, 'NFN＋: A novel network followed network for retinal vessel segmentation', Neural Networks, 126, pp. 153 - 162, http://dx.doi.org/10.1016/j.neunet.2020.02.018

Jia H; Xia Y; Song Y; Zhang D; Huang H; Zhang Y; Cai W, 2020, '3D APA-Net: 3D Adversarial Pyramid Anisotropic Convolutional Network for Prostate Segmentation in MR Images', IEEE Transactions on Medical Imaging, 39, pp. 447 - 457, http://dx.doi.org/10.1109/TMI.2019.2928056

Zheng Y; Meng F; Liu J; Guo B; Song Y; Zhang X; Wang L, 2020, 'Fourier Transform to Group Feature on Generated Coarser Contours for Fast 2D Shape Matching', IEEE Access, 8, pp. 90141 - 90152, http://dx.doi.org/10.1109/ACCESS.2020.2994234

Khanal D; Zhang F; Song Y; Hau H; Gautam A; Yamaguchi S; Uertz J; Mills S; Kondyurin A; Knowles JC; Georgiou G; Ramzan I; Cai W; Ng KW; Chrzanowski W, 2019, 'Biological impact of nanodiamond particles–label free, high-resolution methods for nanotoxicity assessment', Nanotoxicology, 13, pp. 1210 - 1226, http://dx.doi.org/10.1080/17435390.2019.1650970

Xie Y; Xia Y; Zhang J; Song Y; Feng D; Fulham M; Cai W, 2019, 'Knowledge-based Collaborative Deep Learning for Benign-Malignant Lung Nodule Classification on Chest CT', IEEE Transactions on Medical Imaging, 38, pp. 991 - 1004, http://dx.doi.org/10.1109/TMI.2018.2876510

Gao C; He X; Gan D; Chen X; Feng F; Li Y; Chua T; Yao L; Song Y; Jin D, 2019, 'Learning to Recommend with Multiple Cascading Behaviors', IEEE Transactions on Knowledge and Data Engineering, pp. 1 - 1, http://dx.doi.org/10.1109/TKDE.2019.2958808

Liu S; Zhang D; Song Y; Peng H; Cai W, 2018, 'Automated 3-D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back Tracking', IEEE Transactions on Medical Imaging, 37, pp. 2441 - 2452, http://dx.doi.org/10.1109/TMI.2018.2833420

Pan Y; Xia Y; Song Y; Cai W, 2018, 'Locality constrained encoding of frequency and spatial information for image classification', Multimedia Tools and Applications, 77, pp. 24891 - 24907, http://dx.doi.org/10.1007/s11042-018-5712-3

Tareef A; Song Y; Huang H; Feng D; Chen M; Wang Y; Cai W, 2018, 'Multi-Pass Fast Watershed for Accurate Segmentation of Overlapping Cervical Cells', IEEE Transactions on Medical Imaging, 37, pp. 2044 - 2059, http://dx.doi.org/10.1109/TMI.2018.2815013

Meng F; Shan D; Shi R; Song Y; Guo B; Cai W, 2018, 'Merged region based image retrieval', Journal of Visual Communication and Image Representation, 55, pp. 572 - 585, http://dx.doi.org/10.1016/j.jvcir.2018.07.003

Zhang F; Savadjiev P; Cai W; Song Y; Rathi Y; Tunç B; Parker D; Kapur T; Schultz RT; Makris N; Verma R; O'Donnell LJ, 2018, 'Whole brain white matter connectivity analysis using machine learning: An application to autism', NeuroImage, 172, pp. 826 - 837, http://dx.doi.org/10.1016/j.neuroimage.2017.10.029

Zhang F; Wu W; Ning L; McAnulty G; Waber D; Gagoski B; Sarill K; Hamoda HM; Song Y; Cai W; Rathi Y; O'Donnell LJ, 2018, 'Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis', NeuroImage, 171, pp. 341 - 354, http://dx.doi.org/10.1016/j.neuroimage.2018.01.006

Zhang D; Liu S; Song Y; Feng D; Peng H; Cai W, 2018, 'Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction', Neuroinformatics, 16, pp. 153 - 166, http://dx.doi.org/10.1007/s12021-017-9353-x

Jia H; Xia Y; Song Y; Cai W; Fulham M; Feng DD, 2018, 'Atlas registration and ensemble deep convolutional neural network-based prostate segmentation using magnetic resonance imaging', Neurocomputing, 275, pp. 1358 - 1369, http://dx.doi.org/10.1016/j.neucom.2017.09.084

Meng F; Shi R; Shan D; Song Y; He W; Cai W, 2017, 'Multi-sensor image fusion based on regional characteristics', International Journal of Distributed Sensor Networks, 13, http://dx.doi.org/10.1177/1550147717741105

Song Y; Li Q; Huang H; Feng D; Chen M; Cai W, 2017, 'Low Dimensional Representation of Fisher Vectors for Microscopy Image Classification', IEEE Transactions on Medical Imaging, 36, pp. 1636 - 1649, http://dx.doi.org/10.1109/TMI.2017.2687466

Tareef A; Song Y; Huang H; Wang Y; Feng D; Chen M; Cai W, 2017, 'Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling', Neurocomputing, 248, pp. 28 - 40, http://dx.doi.org/10.1016/j.neucom.2017.01.093

Song Y; Li Q; Zhang F; Huang H; Feng D; Wang Y; Chen M; Cai W, 2017, 'Dual discriminative local coding for tissue aging analysis', Medical Image Analysis, 38, pp. 65 - 76, http://dx.doi.org/10.1016/j.media.2016.10.001

Tareef A; Song Y; Cai W; Huang H; Chang H; Wang Y; Fulham M; Feng D; Chen M, 2017, 'Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation', Neurocomputing, 221, pp. 94 - 107, http://dx.doi.org/10.1016/j.neucom.2016.09.070

Song Y; Li Q; Feng D; Zou JJ; Cai W, 2016, 'Texture image classification with discriminative neural networks', Computational Visual Media, 2, pp. 367 - 377, http://dx.doi.org/10.1007/s41095-016-0060-6

Yang MY; Verschuer J; Shi Y; Song Y; Katsifis A; Eberl S; Wong K; Brannan JD; Cai W; Finlay WH; Chan HK, 2016, 'The effect of device resistance and inhalation flow rate on the lung deposition of orally inhaled mannitol dry powder', International Journal of Pharmaceutics, 513, pp. 294 - 301, http://dx.doi.org/10.1016/j.ijpharm.2016.09.047

Song Y; Cai W; Huang H; Feng D; Wang Y; Chen M, 2016, 'Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors', BMC Bioinformatics, 17, http://dx.doi.org/10.1186/s12859-016-1318-9

Zhang F; Song Y; Cai W; Liu S; Liu S; Pujol S; Kikinis R; Xia Y; Fulham MJ; Feng DD, 2016, 'Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging', IEEE Transactions on Biomedical Engineering, 63, pp. 1058 - 1069, http://dx.doi.org/10.1109/TBME.2015.2478028

Zhang F; Song Y; Cai W; Hauptmann AG; Liu S; Pujol S; Kikinis R; Fulham MJ; Feng DD; Chen M, 2016, 'Dictionary pruning with visual word significance for medical image retrieval', Neurocomputing, 177, pp. 75 - 88, http://dx.doi.org/10.1016/j.neucom.2015.11.008

Song Y; Cai W; Huang H; Zhou Y; Feng DD; Wang Y; Fulham MJ; Chen M, 2015, 'Large margin local estimate with applications to medical image classification', IEEE Transactions on Medical Imaging, 34, pp. 1362 - 1377, http://dx.doi.org/10.1109/TMI.2015.2393954

Song Y; Cai W; Huang H; Zhou Y; Wang Y; Feng DD, 2015, 'Locality-constrained Subcluster Representation Ensemble for lung image classification', Medical Image Analysis, 22, pp. 102 - 113, http://dx.doi.org/10.1016/j.media.2015.03.003

Song Y; Cai W; Huang H; Wang X; Zhou Y; Fulham MJ; Feng DD, 2014, 'Lesion detection and characterization with context driven approximation in thoracic FDG PET-CT images of NSCLC studies', IEEE Transactions on Medical Imaging, 33, pp. 408 - 421, http://dx.doi.org/10.1109/TMI.2013.2285931

Zhang F; Song Y; Cai W; Lee MZ; Zhou Y; Huang H; Shan S; Fulham MJ; Feng DD, 2014, 'Lung nodule classification with multilevel patch-based context analysis', IEEE Transactions on Biomedical Engineering, 61, pp. 1155 - 1166, http://dx.doi.org/10.1109/TBME.2013.2295593

Song Y; Cai W; Huang H; Wang Y; Feng DD; Chen M, 2013, 'Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling', BMC Bioinformatics, 14, http://dx.doi.org/10.1186/1471-2105-14-173

Song Y; Cai W; Zhou Y; Feng DD, 2013, 'Feature-based image patch approximation for lung tissue classification', IEEE Transactions on Medical Imaging, 32, pp. 797 - 808, http://dx.doi.org/10.1109/TMI.2013.2241448

Song Y; Cai W; Kim J; Feng DD, 2012, 'A multistage discriminative model for tumor and lymph node detection in thoracic images', IEEE Transactions on Medical Imaging, 31, pp. 1061 - 1075, http://dx.doi.org/10.1109/TMI.2012.2185057

Conference Papers

Li P; De Rijke M; Xue H; Ao S; Song Y; Salim FD, 2024, 'Large Language Models for Next Point-of-Interest Recommendation', in SIGIR 2024 - Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, pp. 1463 - 1472, http://dx.doi.org/10.1145/3626772.3657840

Fan L; Ding Y; Pagnucco M; Song Y, 2024, 'Patch-Wise Augmentation for Anomaly Detection and Localization', in ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), IEEE, pp. 5425 - 5429, presented at ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 14 April 2024 - 19 April 2024, http://dx.doi.org/10.1109/icassp48485.2024.10446994

Cong C; Xuan S; Liu S; Zhang S; Pagnucco M; Song Y, 2024, 'Decoupled Optimisation for Long-Tailed Visual Recognition', in Proceedings of the AAAI Conference on Artificial Intelligence, pp. 1380 - 1388, http://dx.doi.org/10.1609/aaai.v38i2.27902

Zhu Y; Tchetchenian A; Yin X; Liew A; Song Y; Meijering E, 2024, 'AC-UNet: Adaptive Connection UNet for White Matter Tract Segmentation Through Neural Architecture Search', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635404

Dodballapur V; Liu D; Song Y; Cai W, 2024, 'Cross-Domain Exemplars for Cell Counting', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635905

Limarga R; Song Y; Pagnucco M; Rajaratnam D, 2024, 'Epistemic Reasoning in Computational Machine Ethics', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 82 - 94, http://dx.doi.org/10.1007/978-981-99-8391-9_7

Limarga R; Song Y; Nayak A; Rajaratnam D; Pagnucco M, 2024, 'Formalisation and Evaluation of Properties for Consequentialist Machine Ethics', in IJCAI International Joint Conference on Artificial Intelligence, pp. 440 - 448

Hu Y; Meijering E; Song Y, 2024, 'Large-Kernel Attention Network with Distance Regression and Topological Self-correction for Airway Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 115 - 126, http://dx.doi.org/10.1007/978-981-99-8388-9_10

Yan S; Liu S; Di Ieva A; Pagnucco M; Song Y, 2024, 'Meta-Transfer Learning for Few-Shot Meningioma Segmentation', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635194

Malik M; Jiang J; Song Y; Jha S, 2024, 'MFVIEW: Multi-modal Fake News Detection with View-Specific Information Extraction', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 345 - 353, http://dx.doi.org/10.1007/978-3-031-56063-7_26

Wang Y; Pagnucco M; Song Y, 2024, 'Self-training with Domain-Mixed Data for Few-Shot Domain Adaptation in Medical Image Segmentation Tasks', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 299 - 309, http://dx.doi.org/10.1007/978-3-031-45673-2_30

Sandarenu P; Chen J; Slapetova I; Browne L; Graham PH; Swarbrick A; Millar EKA; Song Y; Meijering E, 2024, 'Semi-Supervised Variational Autoencoder for Cell Feature Extraction In Multiplexed Immunofluorescence Images', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635107

Heng Z; Pagnucco M; Meijering E; Song Y, 2024, 'Vascular Topology Rectification Network for Automated Retinal Artery/Vein Segmentation', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635229

Xu Y; Guo R; Pagnucco M; Song Y, 2023, 'Draw2Edit: Mask-Free Sketch-Guided Image Manipulation', in MM 2023 - Proceedings of the 31st ACM International Conference on Multimedia, pp. 7205 - 7215, http://dx.doi.org/10.1145/3581783.3612398

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