Select Publications

Journal articles

Jonnagaddala J; Liaw S-T; Ray P; Kumar M; Dai H-J, 2015, 'Identification and progression of heart disease risk factors in diabetic patients from longitudinal electronic health records.', BioMed Research International

Sue D; Ray P; Talaei-Khoei A; Jonnagaddala J; Vichitvanichphong S, 2014, 'Assessing video games to improve driving skills: a literature review and observational study', JMIR serious games, 2, pp. e5 - e5

Jonnagaddala J; Jue TR; Ray P; Talaei-Khoei A, 2014, 'Data Sharing Challenges and Recommendations for Human Biorepositories: A Systematic Literature Review', The International Technology Management Review, 4, pp. 68 - 77

Conference Papers

Shulajkovska M; Jelenc M; Jonnagaddala J; Gradišek A, 2026, 'Colorectal Cancer Survival Prediction Using Multimodal Fusion', in Studies in Health Technology and Informatics, pp. 87 - 91, http://dx.doi.org/10.3233/SHTI260114

Mir TH; Yang HP; Chou YY; Teng YC; Liao WH; Lin YC; Gupta S; Panchal O; Jonnagaddala J; Chen CT; Dai HJ, 2025, 'Deidentification and Temporal Normalization of the Electronic Health Record Notes Using Large Language Models: The 2023 SREDH/AI-Cup Competition for Deidentification of Sensitive Health Information', in Communications in Computer and Information Science, pp. 1 - 16, http://dx.doi.org/10.1007/978-981-97-7966-6_1

Gupta S; Alla NLV; Panchal O; Witowski J; Jonnagaddala J, 2025, 'Evaluation of OpenDeID Pipeline in the 2023 SREDH/AI-Cup Competition for Deidentification of Sensitive Health Information', in Communications in Computer and Information Science, pp. 107 - 119, http://dx.doi.org/10.1007/978-981-97-7966-6_8

Ru ZJ; Panchal O; Chen CT; Jonnagaddala J; Dai HJ; Hsueh SC, 2025, 'Utilizing Large Language Models for Privacy Protection and Advancing Medical Digitization', in Communications in Computer and Information Science, pp. 177 - 188, http://dx.doi.org/10.1007/978-981-97-7966-6_13

Rakhshanda S; Liaw ST; Rhee J; Rye KA; Jonnagaddala J; Liaw T, 2024, 'Strategies to Address Statin Medication Intolerance Among Patients at Risk of Cardiovascular Disease Identified Through Electronic Health Records: A Literature Review and Pooled Analysis', in Mantas J; Hasman A; Demiris G; Saranto K; Marschollek M; Arvanitis TN; Ognjanovic I; Benis A; Gallos P; Zoulias E; Andrikopoulou E (eds.), Studies in Health Technology and Informatics, IOS Press, GREECE, Athens, pp. 132 - 136, presented at 34th Medical Informatics Europe Conference-MIE, GREECE, Athens, 25 August 2024 - 29 August 2024, http://dx.doi.org/10.3233/SHTI240362

Lukitasari M; Jonnagaddala J; Liaw ST; Jalaludin B, 2024, 'Approaches for Evaluating Visit-to-Visit Blood Pressure Variability as a Cardiovascular Disease Risk Factor: A Scoping Review', in Studies in Health Technology and Informatics, pp. 349 - 353, http://dx.doi.org/10.3233/SHTI240417

Gupta S; Liu J; Wong ZSY; Jonnagaddala J, 2024, 'Preliminary Evaluation of Fine-Tuning the OpenDeLD Deidentification Pipeline Across Multi-Center Corpora', in Studies in Health Technology and Informatics, pp. 719 - 723, http://dx.doi.org/10.3233/SHTI240515

Lukitasari M; Jonnagaddala J; Liaw ST; Jalaludin B, 2024, 'Association between Visit to Visit Blood Pressure Variability and Cardiovascular Outcome: A Meta-Analysis', in Studies in Health Technology and Informatics, pp. 262 - 266, http://dx.doi.org/10.3233/SHTI240149

Lukitasari M; Liaw ST; Jalaludin B; Jonnagaddala J, 2024, 'Visit-to-Visit Blood Pressure Variability in Cardiovascular Disease', in Studies in Health Technology and Informatics, pp. 1358 - 1359, http://dx.doi.org/10.3233/SHTI231193

Rakhshanda S; Liaw ST; Rhee J; Rye KA; Jonnagaddala J; Liaw T, 2023, 'Strategies to Improve Statin Medication Adherence Among Patients at Risk of Cardiovascular Disease Identified Through Electronic Health Records: A Literature Review', in Bichel-Findlay J; Otero P; Scott P; Huesing E (eds.), Studies in Health Technology and Informatics, IOS Press, AUSTRALIA, Sydney, pp. 986 - 990, presented at 19th World Congress on Medical and Health Informatics (MEDINFO), AUSTRALIA, Sydney, 08 July 2023 - 12 July 2023, http://dx.doi.org/10.3233/SHTI231112

Lukitasari M; Liaw S-T; Jalaludin B; Jonnagaddala J, 2023, 'Visit to Visit Blood Pressure Variability and Cardiovascular Disease', in Bichel-Findlay J; Otero P; Scott P; Huesing E (eds.), IOS Press, ICC Sydney, presented at MEDINFO 2023, ICC Sydney, 08 July 2023 - 12 July 2023, http://dx.doi.org/10.3233/SHTI310

Lu Y; Li J; Wang X; Dorajoo S; Feng M; Hsu M-H; Hsu JCC; Hwang J; Iqbal U; Chen ZJ; Jonnagaddala J, 2021, 'Characterizing Dual Combination Therapy Use In Treatment Escalation Of Hypertension: Real-world Evidence From Multinational Cohorts', in CIRCULATION, LIPPINCOTT WILLIAMS & WILKINS, MA, Boston, presented at Annual Scientific Sessions of the American-Heart-Association / Resuscitation Science Symposium, MA, Boston, 12 November 2021 - 15 November 2021

Prats-Uribe A; Sena AG; Lai LYH; Ahmed W-U-R; Alghoul H; Alser O; Alshammari TM; Areia C; Carter WA; Casajust P; Dawoud D; Golozar A; Jonnagaddala J; Mehta P; Mengchun G; Morales DR; Nyberg F; Posada JD; Recalde M; Roel E; Shah K; Shah NH; Schilling LM; Subbian V; Vizcaya D; Zhang L; Zhang Y; Zhu H; Liu L; You SC; Rijnbeek PR; Hripcsak G; Lane J; Burn E; Reich C; Suchard MA; Duartes-Salles T; Kostka K; Ryan P; Prieto-Alhambra D, 2021, 'Heterogeneity and temporal variation in the management of COVID-19: A multinational drug utilisation study including 274,719 hospitalised patients from, the United States of America, China, Spain, and South Korea', in PHARMACOEPIDEMIOLOGY AND DRUG SAFETY, WILEY, pp. 78 - 79, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000687807300157&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ostropolets A; Reich C; Ryan P; Weng C; Molinaro A; DeFalco F; Jonnagaddala J; Liaw ST; Jeon H; Park RW; Spotnitz ME; Natarajan K; Argyriou G; Kostka K; Miller R; Williams A; Minty E; Posada J; Hripcsak G, 2020, 'Characterizing database granularity using SNOMED-CT hierarchy', in AMIA Annual Symposium Proceedings AMIA Symposium, pp. 983 - 992

Raju A; Yao J; Haq MMH; Jonnagaddala J; Huang J, 2020, 'Graph Attention Multi-instance Learning for Accurate Colorectal Cancer Staging', in Lecture Notes in Computer Science, pp. 529 - 539, http://dx.doi.org/10.1007/978-3-030-59722-1_51

Chen A; Jonnagaddala J; Nekkantti C; Liaw S-T, 2019, 'Generation of Surrogates for De-Identification of Electronic Health Records.', in MedInfo, pp. 70 - 73

Chang N-W; Jonnagaddala J; Wang F-D; Dai H-J, 2018, 'A study on identification of organism and micro-RNA mentions in figure captions', in Proceedings of the BioCreative VI Challenge and Workshop (October 18–20). DoubleTree by Hilton Hotel, Bethesda, Maryland, USA, pp. 28 - 31

Chen A; Zhang Y; Jonnagaddala J, 2018, 'Action tremor detection in Parkinson’s disease patients using smartphone based sensor data', in 2017 Parkinson’s Disease Digital Biomarker DREAM Challenge, http://doi.org/10.7303/syn11423921, http://doi.org/10.7303/syn11423921

Liyanage H; Liaw S-T; Jonnagaddala J; Hinton W; de LUSIGNAN S, 2018, 'Common Data Models (CDMs) to Enhance International Big Data Analytics: A Diabetes Use Case to Compare Three CDMs.', in EFMI-STC, pp. 60 - 64

Chen EZ-Y; Singh O; Jue TR; Wang C-K; Jonnagaddala J; Dai H-J, 2018, 'Identifying Mutation-induced Protein-Protein Interactions in Scientific Literature', in Proceedings of the BioCreative VI Challenge Evaluation Workshop

Jonnagaddala J; Dai HJ; Chang YC, 2017, 'Introduction', in Dddsm 2017 1st International Workshop on Digital Disease Detection Using Social Media Proceedings of the Workshop, pp. iii

Jonnagaddala J; Hu F, 2017, 'Automatic coding of death certificates to ICD-10 terminology', in In Working Notes of CLEF 2017 - Conference and Labs of the Evaluation forum, Dublin, Ireland, September 11-14, 2017

Huang Y-J; Su CH; Chang Y-C; Ting T-H; Fu T-Y; Wang R-M; Dai H-J; Chang Y-C; Jonnagaddala J; Hsu W-L, 2017, 'Incorporating dependency trees improve identification of pregnant women on social media platforms', in Proceedings of the International Workshop on Digital Disease Detection using Social Media 2017 (DDDSM-2017), pp. 26 - 32

Jonnagaddala J; Dai H-J; Wang C-K; Lai P-T, 2017, 'Performance and interoperability assessment of Disease Extract Annotation Server (DEAS)', in Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, Barcelona, Spain, April 26-27, 2017

Adam DC; Jonnagaddala J; Han-Chen D; Batongbacal S; Almeida L; Zhu JZ; Yang JJ; Mundekkat JM; Badman S; Chughtai A; others , 2017, 'ZikaHack 2016: A digital disease detection competition', in Proceedings of the International Workshop on Digital Disease Detection using Social Media 2017 (DDDSM-2017), pp. 39 - 46

Jonnagaddala J; Jue TR; Dai H-J, 2016, 'Binary classification of Twitter posts for adverse drug reactions', in Proceedings of the Social Media Mining Shared Task Workshop at the Pacific Symposium on Biocomputing

Jonnagaddala J; Croucher JL; Jue TR; Meagher NS; Caruso L; Ward R; Hawkins NJ, 2016, 'Integration and Analysis of Heterogeneous Colorectal Cancer Data for Translational Research', in Nursing Informatics 2016, pp. 387 - 387

Jonnagaddala J; Liaw ST; Ray P; Liaw T, 2015, 'Impact of data quality assessment on development of clinical predictive models.', in Sarkar IN; Georgiou A; Marques PMD (eds.), Studies in health technology and informatics, IOS Press, BRAZIL, Int Med Informat Assoc, Brazilian Hlth Informat Soc, Sao Paulo, pp. 1069 - 1069, presented at 15th World Congress on Health and Biomedical Informatics (MEDINFO), BRAZIL, Int Med Informat Assoc, Brazilian Hlth Informat Soc, Sao Paulo, 19 August 2015 - 23 August 2015, http://dx.doi.org/10.3233/978-1-61499-564-7-1069

Jonnagaddala J; Dai H-J; Ray P; Liaw S-T, 2015, 'A preliminary study on automatic identification of patient smoking status in unstructured electronic health records', in Proceedings of BioNLP 15, pp. 147 - 151

Jonnagaddala J; Chang N-W; Jue TR; Dai H-J, 2015, 'Recognition and normalization of disease mentions in PubMed abstracts', in Proceedings of the fifth BioCreative challenge evaluation workshop, Sevilla, Spain, September 9-11, 2015.

Jonnagaddala J; Liaw S-T; Rayb P; Kumarc M; Dai H-J, 2015, 'TMUNSW: Identification of disorders and normalization to SNOMED-CT terminology in unstructured clinical notes', in 9th International Workshop on Semantic Evaluations.

Lin W-S; Dai H-J; Jonnagaddala J; Chang N-W; Jue TR; Iqbal U; Shao JY-H; Chiang I-J; Li Y-C, 2015, 'Utilizing different word representation methods for twitter data in adverse drug reactions extraction', in 2015 Conference on Technologies and Applications of Artificial Intelligence (TAAI), IEEE, pp. 260 - 265, IEEE

Jonnagaddala J; Liaw S-T; Ray P; Kumar M; Dai H-J, 2014, 'HTNSystem: Hypertension Information Extraction System for Unstructured Clinical Notes', in Technologies and Applications of Artificial Intelligence, Taipei, Taiwan, 21-23 November 2014, Springer International Publishing, pp. 219 - 227, Springer International Publishing

Jonnagaddala J; Kumar M; Dai H-J; Rachmani E; Hsu C-Y, 2014, 'TMUNSW: Disorder Concept Recognition and Normalization in Clinical Notes for SemEval-2014 Task 7', in 8th International Workshop on Semantic Evaluation (SemEval 2014), Dublin, Ireland, August 23-24, 2014., ACL Anthology, pp. 663 - 667, ACL Anthology

Jonnagaddala J; Li J; Ray P, 2013, 'Evaluation of caBIG¯ caTissue Software', in World Congress on Medical Physics and Biomedical Engineering May 26-31, 2012, Beijing, China, Springer, Berlin, Heidelberg, pp. 1592 - 1595, Springer, Berlin, Heidelberg

Conference Proceedings (Editor of)

Jonnagaddala J; Dai H-J; Chen C-T; Chang Y-C; Feng H-H, (eds.), 2025, 'Large Language Models for Automatic Deidentification of Sensitive Health Information in Clinical Speech', Taipei, Taiwan,, presented at 2025 International workshop on Deidentification of Electronic Medical Record Notes (2025 IW-DMRN), Taipei, Taiwan,, 10 August 2025, http://dx.doi.org/10.1007/978-981-92-2282-7

Jonnagaddala J, (ed.), 2024, 'Large Language Models for Automatic Deidentification of Electronic Health Record Notes', presented at 2024 International Workshop on Deidentification of Electronic Medical Record Notes, 15 January 2024, http://dx.doi.org/10.1007/978-981-97-7966-6

Jonnagaddala J; Dai H-J; Chang Y-C, (eds.), 2017, 'Proceedings of the International Workshop on Digital Disease Detection using Social Media 2017 (DDDSM-2017)', presented at International Workshop on Digital Disease Detection using Social Media 2017 (DDDSM-2017), 27 November 2017, https://aclanthology.org/volumes/W17-58/

Conference Abstracts

Guo J; Jonnagaddala J, 2025, 'Structuring Asia-Pacific Digital Therapeutics Regulatory Data within the OMOP Common Data Model', Shanghai, China, December 6-7, presented at 2025 OHDSI APAC Symposium, Shanghai, China, December 6-7, 06 December 2025 - 07 December 2025, http://dx.doi.org/10.5281/zenodo.17733575

Tran M; Rhee J; Jonnagaddala J; McColl A; Devi A; Funnell I; Montague C, 2025, 'From Prompt to Practice: Assessing the Quality and Safety of AI-Generated Medical Information', Geelong, Victoria, presented at Australasian Association for Academic Primary Care, Geelong, Victoria, 11 August 2025 - 12 August 2025

Simpson I; Rhee J; White S; Jonnagaddala J, 2024, 'Factors Influencing Consultation Length in General Practice: A Rapid Literature Review', UNSW, presented at Randwick Clinical Campus Emerging Researchers Symposium 2024, UNSW, 27 November 2024 - 27 November 2024, http://dx.doi.org/10.26190/unsworks/30749

Jiayue W; Sitas F; Jonnagaddala J, 2023, 'Systematic data quality assessment of general practitioner collected smoking information on smoking-associated disease risks', in 2023 OHDSI APAC Symposium, University of New South Wales Sydney, Australia, presented at 2023 OHDSI APAC Symposium, University of New South Wales Sydney, Australia, 13 July 2023 - 14 July 2023, http://dx.doi.org/10.5281/zenodo.10622474

Lukitasari M; Liaw S-T; Jalaludin B; Jonnagaddala J, 2023, 'Visit to Visit Blood Pressure Variability and Cardiovascular Disease', ICC Sydney, presented at MEDINFO 2023, ICC Sydney, 08 July 2023 - 12 July 2023, http://dx.doi.org/10.26190/unsworks/28721

Lu Y; Li J; Wang X; Dorajoo S; Feng M; Hsu M-H; Hsu JCC; Hwang J; Iqbal U; Chen ZJ; Jonnagaddala J; Li Y-CY; Liaw T; Ngiam KY; Nguyen P-A; Park RW; Pratt N; Reich C; Rhee SY; Sathappan SM; Tan HX; You SC; Zhang X; Krumholz HM; Suchard M; Liu Y; Van Zandt M; Xu H, 2021, 'Abstract 14094: Characterizing Dual Combination Therapy Use In Treatment Escalation Of Hypertension: Real-world Evidence From Multinational Cohorts', in Circulation, Wolters Kluwer, Vol. 144, pp. a14094 - a14094, http://dx.doi.org/10.1161/circ.144.suppl_1.14094

Liaw S-T; Guo G; Yeoh S-L; Jonnagaddala J, 2019, 'Opioids in general practice: use or abuse', in AUSTRALIAN JOURNAL OF PRIMARY HEALTH, CSIRO PUBLISHING UNIPARK, BLDG 1, LEVEL 1, 195 WELLINGTON RD, LOCKED BAG 10 …, Vol. 25, pp. XXXII - XXXIII, CSIRO PUBLISHING UNIPARK, BLDG 1, LEVEL 1, 195 WELLINGTON RD, LOCKED BAG 10 …

Godinho M; Jonnagaddala J; Gudi N; Narasimhan P; Liaw S-T, 2018, 'mHealth for integrated service delivery in the Western Pacific Region: A Systematic Review', Colombo, Sri Lanka, presented at 10th Biennial Conference of the Asia Pacific Association for Medical Informatics (APAMI 2018), Colombo, Sri Lanka, 09 October 2018 - 11 October 2018, http://dhw2018.org/apami2018/download/2588/

Jonnagaddala J; Croucher JL; Meagher NS; Kumar M; Caruso L; Jue TR; London J; Ward RL; Hawkins NJ, 2015, 'Supporting translational research: Accessing colorectal cancer research data', in Australian Open Research Data Showcase, Canberra, Australia, http://dx.doi.org/10.26190/unsworks/25673


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