Select Publications
Journal articles
2024, 'Methylation of elongation factor 1A by yeast Efm4 or human eEF1A-KMT2 involves a beta-hairpin recognition motif and crosstalks with phosphorylation', Journal of Biological Chemistry, 300, http://dx.doi.org/10.1016/j.jbc.2024.105639
,2023, 'Effect of Ginger Root Powder on Gastrointestinal Bacteria Composition, Gastrointestinal Symptoms, Mental Health, Fatigue, and Quality of Life: A Double-Blind Placebo-Controlled Trial', Journal of Nutrition, 153, pp. 3193 - 3206, http://dx.doi.org/10.1016/j.tjnut.2023.09.002
,2023, 'Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell', Proceedings of the National Academy of Sciences of the United States of America, 120, http://dx.doi.org/10.1073/pnas.2219418120
,2023, 'Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae', mSystems, 8, pp. e00119 - e00123, http://dx.doi.org/10.1128/msystems.00119-23
,2022, 'Contaminant release, mixing and microbial fluctuations initiated by infiltrating water within a replica field-scale legacy radioactive waste trench', Science of the Total Environment, 851, http://dx.doi.org/10.1016/j.scitotenv.2022.158241
,2022, 'Metaproteomics reveals methyltransferases implicated in dichloromethane and glycine betaine fermentation by ‘Candidatus Formimonas warabiya’ strain DCMF', Frontiers in Microbiology, 13, pp. 1035247, http://dx.doi.org/10.3389/fmicb.2022.1035247
,2022, 'The Interplay Between Use of Biological Therapies, Psychological State, and the Microbiome in IBD', Frontiers in Medicine, 9, pp. 788992, http://dx.doi.org/10.3389/fmed.2022.788992
,2022, 'Characterisation of Bacteriophage vB_SmaM_Ps15 Infective to Stenotrophomonas maltophilia Clinical Ocular Isolates', Viruses, 14, pp. 709 - 709, http://dx.doi.org/10.3390/v14040709
,2021, 'Genomic Insights Into the Archaea Inhabiting an Australian Radioactive Legacy Site', Frontiers in Microbiology, 12, pp. 732575 - 732575, http://dx.doi.org/10.3389/fmicb.2021.732575
,2021, 'Biogeochemical Mobility of Contaminants from a Replica Radioactive Waste Trench in Response to Rainfall-Induced Redox Oscillations', Environmental Science and Technology, 55, pp. 8793 - 8805, http://dx.doi.org/10.1021/acs.est.1c01604
,2021, 'Biocrust cyanobacterial composition, diversity, and environmental drivers in two contrasting climatic regions in Brazil', Geoderma, 386, http://dx.doi.org/10.1016/j.geoderma.2020.114914
,2021, 'Community-led, integrated, reproducible multi-omics with anvi’o', Nature Microbiology, 6, pp. 3 - 6, http://dx.doi.org/10.1038/s41564-020-00834-3
,2020, 'Shed light in the dark lineages of the fungal tree of life—stres', Life, 10, pp. 1 - 13, http://dx.doi.org/10.3390/life10120362
,2020, 'Bacteriophage genotyping using BOXA repetitive-PCR', BMC Microbiology, 20, http://dx.doi.org/10.1186/s12866-020-01770-2
,2019, 'Genomic insights into the Archaea inhabiting an Australian radioactive legacy site', , http://dx.doi.org/10.1101/728089
,2018, 'Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes', ISME Journal, 12, pp. 2619 - 2639, http://dx.doi.org/10.1038/s41396-018-0208-8
,2017, 'Response of microbial community function to fluctuating geochemical conditions within a legacy radioactive waste trench environment', Applied and Environmental Microbiology, 83, pp. e00729 - e00717, http://dx.doi.org/10.1128/AEM.00729-17
,2017, 'Uranium extraction from a low-grade, stockpiled, non-sulfidic ore: Impact of added iron and the native microbial consortia', Hydrometallurgy, 167, pp. 81 - 91, http://dx.doi.org/10.1016/j.hydromet.2016.11.002
,2017, 'Response of microbial community function to fluctuating geochemical conditions within a legacy radioactive waste trench environment', , http://dx.doi.org/10.1101/121376
,2015, 'Uranium Binding Mechanisms of the Acid-Tolerant Fungus Coniochaeta fodinicola', Environmental Science and Technology, 49, pp. 8487 - 8496, http://dx.doi.org/10.1021/acs.est.5b01342
,2015, 'Acidotolerant genus Fodinomyces (Ascomycota: Capnodiales) is a synonym of Acidiella', Czech Mycology, 67, pp. 37 - 38
,2014, 'Fodinomyces uranophilus gen. nov. sp. nov. and Coniochaeta fodinicola sp. nov., two uranium mine-inhabiting Ascomycota fungi from northern Australia', Mycologia, 106, pp. 1073 - 1089, http://dx.doi.org/10.3852/14-013
,2012, 'Isolation of novel benzo[a]anthracene-degrading microorganisms and continuous bioremediation in an expanded-bed bioreactor', Bioproc Biosystems Eng, 35, pp. 851 - 855, http://dx.doi.org/10.1007/s00449-011-0669-x
,2007, 'Lixiviación Microbiana', REBIGO, pp. 47 - 54
,Conference Papers
2012, 'The isolation of fungi from low-pH, high ionic strength uranium mine process water', in Proceedings of the 6th International Symposium on Biohydrometallurgy, 6th International Symposium on Biohydrometallurgy, Falmouth (UK), presented at 6th International Symposium on Biohydrometallurgy, Falmouth (UK), 18 June 2012 - 20 June 2012, http://dx.doi.org/10.13140/2.1.2786.9762
,Conference Posters
2019, 'P234 Longitudinal course of inflammatory bowel diseases: a model of microbial, immune, and neuropsychological integration', Vol. 13, pp. S213 - S214, https://academic.oup.com/ecco-jcc/article/13/Supplement_1/S213/5300882
,2018, 'New Archaea lineages from a radioactive legacy site'
,2018, 'OTUreporter: a modular automated pipeline for the analysis and report of amplicon data', http://dx.doi.org/10.6084/m9.figshare.6521171
,2018, 'OTUreporter: an automated pipeline for the analysis and report of amplicon sequencing data'
,2017, 'Impacts of dynamic geochemical conditions on plutonium and americium mobility at a legacy trench disposal site', Barcelona, Spain, presented at 16th International Conference on the Chemistry and Migration Behaviour of Actinides and Fission Products in the Geosphere, Barcelona, Spain, 10 September 2017 - 15 September 2017
,2017, 'Phylogenomics of a radioactive legacy site reveals new Archaea phyla of unknown function', Sydney, Australia, presented at Sydney Bioinformatics Research Symposium 2017, Sydney, Australia, 13 June 2017 - 13 June 2017
,2017, 'Understanding oat stem rust pathogen genome by PacBio sequencing', Sydney, Australia, presented at Sydney Bioinformatics Research Symposium 2017, Sydney, Australia, 13 June 2017 - 13 June 2017
,2016, 'Rainfall-mediated biogeochemical changes at a legacy radionuclide waste disposal site', Montreal, Canada, presented at 16th International Symposium on Microbial Ecology, Montreal, Canada, 21 August 2016 - 26 August 2016, http://dx.doi.org/10.6084/m9.figshare.3502709
,2014, 'Biogeochemical changes during experimental column leaching of a weathered uranium composite', Seoul, South Korea, presented at 15th International Symposium on Microbial Ecology, Seoul, South Korea, 24 August 2014 - 29 August 2014
,2010, 'Biodegradación de compuestos aromáticos contaminantes de suelos por hongos soportados en residuos agroindustriales [Biodegradation of pollutant aromatic compounds in soils by fungi supported on agroindustrial residues].'
,Conference Presentations
2019, 'Unusual DPANN Archaea from a radioactive legacy site'
,2018, 'Microbial profiling of the Himalayan Puga geothermal system: towards an astrobiological model'
,2017, 'Metagenomic and geochemical changes following rainfall at a legacy radionuclide waste disposal site', presented at Australian Microbial Ecology Conference - AusME 2017, Melbourne, Australia, 13 February 2017 - 15 February 2017
,2012, 'The isolation of fungi from low-pH, high ionic strength uranium mine process water'
,Conference Abstracts
2021, 'Biological therapies and bio-microbial dynamics in inflammatory bowel diseases', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 15, pp. S468 - S469, http://dx.doi.org/10.1093/ecco-jcc/jjab076.602
,2020, 'Biological therapies and the trajectories of biopsychological factors in inflammatory bowel diseases', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 35, pp. 108 - 108, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000589476200155&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
,2020, 'P289 Biological therapies and the trajectories of biopsychological factors in inflammatory bowel diseases', in Journal of Crohn's and Colitis, Oxford University Press (OUP), Vol. 14, pp. S296 - S297, http://dx.doi.org/10.1093/ecco-jcc/jjz203.418
,2019, 'Longitudinal course of inflammatory bowel diseases: A model of microbial, immune, and neuropsychological integration', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 34, pp. 140 - 142, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000483843100222&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
,2018, 'Role of iron in controlling radionuclide migration at a legacy waste site exhibiting dynamic redox transitions', in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, AMER CHEMICAL SOC, New Orleans, LA, Vol. 255, presented at 255th National Meeting and Exposition of the American-Chemical-Society (ACS) - Nexus of Food, Energy, and Water, New Orleans, LA, 18 March 2018 - 22 March 2018, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000435539901658&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a
,Reports
2015, Biogeochemical controls of uranium heap leaching
,Theses / Dissertations
2015, Geomicrobiological aspects of the (bio)leaching of weathered low-grade uranium ore, UNSW
,2008, Puesta a punto de metodologías de ecología molecular para el seguimiento de las poblaciones microbianas en un reactor indirecto para la biolixiviación de Zn a partir de concentrados de sulfuros polimetálicos [Set-up of molecular ecology methodologies for monitoring of the microbial populations in an indirect reactor for bioleaching of Zn from polimetalic sulphides concentrates], phdthesis, Universidad Autónoma de Madrid
,Preprints
2022, Cross-linking mass spectrometry discovers, evaluates, and validates the experimental and predicted structural proteome, http://dx.doi.org/10.1101/2022.11.16.516813
,2022, Evidence for a putative isoprene reductase inAcetobacterium wieringae, http://dx.doi.org/10.1101/2022.11.16.516518
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