By Dr Xiaotao Jiang

Journal articles

Jin J; Yim HCH; Chang HME; Wang Y; Choy KHK; Chan SY; Alqawasmeh OAM; Liao J; Jiang XT; Chan DYL; Fok EKL, 2024, 'DEFB119 stratifies dysbiosis with distorted networks in the seminal microbiome associated with male infertility', PNAS Nexus, 3, http://dx.doi.org/10.1093/pnasnexus/pgae419

do Rosario V; Lorzadeh E; Brodaty H; Anstey KJ; Chan K; Roodenrys S; Kent K; Bliokas V; Phillipson L; Weston-Green K; Francois ME; Jiang X; George J; Potter J; Batterham MJ; Charlton K, 2024, 'Assessing the effect of anthocyanins through diet and supplementation on cognitive function in older adults at risk for dementia: protocol for a randomised controlled trial', BMJ Open, 14, pp. e086435, http://dx.doi.org/10.1136/bmjopen-2024-086435

Alqawasmeh OAM; Jiang XT; Cong L; Wu W; Leung MBW; Chung JPW; Yim HCH; Fok EKL; Chan DYL, 2024, 'Vertical transmission of microbiomes into embryo culture media and its association with assisted reproductive outcomes', Reproductive BioMedicine Online, 49, http://dx.doi.org/10.1016/j.rbmo.2024.103977

Clay N; Charlton K; Stefoska-Needham A; Heffernan E; Hassan HIC; Jiang X; Stanford J; Lambert K, 2023, 'What is the climate footprint of therapeutic diets for people with chronic kidney disease? Results from an Australian analysis', Journal of Human Nutrition and Dietetics, 36, pp. 2246 - 2255, http://dx.doi.org/10.1111/jhn.13204

Yin X; Zheng X; Li L; Zhang AN; Jiang XT; Zhang T, 2023, 'ARGs-OAP v3.0: Antibiotic-Resistance Gene Database Curation and Analysis Pipeline Optimization', Engineering, 27, pp. 234 - 241, http://dx.doi.org/10.1016/j.eng.2022.10.011

Yin X; Chen X; Jiang XT; Yang Y; Li B; Shum MHH; Lam TTY; Leung GM; Rose J; Sanchez-Cid C; Vogel TM; Walsh F; Berendonk TU; Midega J; Uchea C; Frigon D; Wright GD; Bezuidenhout C; Picão RC; Ahammad SZ; Nielsen PH; Hugenholtz P; Ashbolt NJ; Corno G; Fatta-Kassinos D; Bürgmann H; Schmitt H; Cha CJ; Pruden A; Smalla K; Cytryn E; Zhang Y; Yang M; Zhu YG; Dechesne A; Smets BF; Graham DW; Gillings MR; Gaze WH; Manaia CM; van Loosdrecht MCM; Alvarez PJJ; Blaser MJ; Tiedje JM; Topp E; Zhang T, 2023, 'Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples', Environmental Science and Technology, 57, pp. 9713 - 9721, http://dx.doi.org/10.1021/acs.est.3c00159

Liou JM; Jiang XT; Chen CC; Luo JC; Bair MJ; Chen PY; Chou CK; Fang YJ; Chen MJ; Chen CC; Lee JY; Yang TH; Yu CC; Kuo CC; Chiu MC; Chen CY; Shun CT; Hu WH; Tsai MH; Hsu YC; Tseng CH; Chang CY; Lin JT; El-Omar EM; Wu MS; Wu CY; Lee YC; Tseng PH; Wu JY; Tai CM; Lee CT; Wang WL, 2023, 'Second-line levofloxacin-based quadruple therapy versus bismuth-based quadruple therapy for Helicobacter pylori eradication and long-term changes to the gut microbiota and antibiotic resistome: a multicentre, open-label, randomised controlled trial', The Lancet Gastroenterology and Hepatology, 8, pp. 228 - 241, http://dx.doi.org/10.1016/S2468-1253(22)00384-3

Zhang F; Gia A; Chen G; Gong L; Behary J; Hold GL; Zekry A; Tang X; Sun Y; El-Omar E; Jiang XT, 2023, 'Critical Assessment of Whole Genome and Viral Enrichment Shotgun Metagenome on the Characterization of Stool Total Virome in Hepatocellular Carcinoma Patients', Viruses, 15, pp. 53, http://dx.doi.org/10.3390/v15010053

O'Donnell M; Teasdale S; Chua X-Y; Hardman J; Wu N; Curtis J; Samaras K; Bolton P; Morris M; Shannon-Weickert C; Purves-Tyson T; El-Assaad F; Jiang X; Hold G; El-Omar E; Wu N, 2022, 'The role of the microbiome in the metabolic health of people with schizophrenia and related psychoses: cross-sectional and pre-post lifestyle intervention analyses', Pathogens, 11, pp. 1279, http://dx.doi.org/10.3390/pathogens11111279

Ma L; Jiang XT; Guan L; Li B; Zhang T, 2022, 'Nationwide biogeography and health implications of bacterial communities in household drinking water', Water Research, 215, http://dx.doi.org/10.1016/j.watres.2022.118238

Li Y; Zhang F; Zheng H; Kalasabail S; Hicks C; Fung KY; Preaudet A; Putoczki T; Beretov J; Millar EKA; El-Omar E; Jiang XT; Yim HCH, 2022, 'Fecal DNA Virome Is Associated with the Development of Colorectal Neoplasia in a Murine Model of Colorectal Cancer', Pathogens, 11, http://dx.doi.org/10.3390/pathogens11040457

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'Corrigendum: The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy(Front. Cell. Infect. Microbiol., (2022), 12, (646165), 10.3389/fcimb.2022.646165)', Frontiers in Cellular and Infection Microbiology, 12, pp. 895332, http://dx.doi.org/10.3389/fcimb.2022.895332

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy', Frontiers in Cellular and Infection Microbiology, 12, pp. 646165, http://dx.doi.org/10.3389/fcimb.2022.646165

Behary J; Amorim N; Jiang XT; Raposo A; Gong L; McGovern E; Ibrahim R; Chu F; Stephens C; Jebeili H; Fragomeli V; Koay YC; Jackson M; O’Sullivan J; Weltman M; McCaughan G; El-Omar E; Zekry A, 2021, 'Gut microbiota impact on the peripheral immune response in non-alcoholic fatty liver disease related hepatocellular carcinoma', Nature Communications, 12, pp. 187, http://dx.doi.org/10.1038/s41467-020-20422-7

Wang Y; Ye J; Ju F; Liu L; Boyd JA; Deng Y; Parks DH; Jiang X; Yin X; Woodcroft BJ; Tyson GW; Hugenholtz P; Polz MF; Zhang T, 2021, 'Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years', Microbiome, 9, http://dx.doi.org/10.1186/s40168-021-01151-5

Wang Y; Qin W; Jiang X; Ju F; Mao Y; Zhang A; Stahl DA; Zhang T, 2021, 'Seasonal prevalence of ammonia-oxidizing archaea in a full-scale municipal wastewater treatment plant treating saline wastewater revealed by a 6-year time-series analysis', Environmental Science and Technology, 55, pp. 2662 - 2673, http://dx.doi.org/10.1021/acs.est.0c07703

Liu J; Li B; Wang Y; Zhang G; Jiang X; Li X, 2019, 'Passage and community changes of filterable bacteria during microfiltration of a surface water supply', Environment International, 131, http://dx.doi.org/10.1016/j.envint.2019.104998

Ng C; Tan B; Jiang XT; Gu X; Chen H; Schmitz BW; Haller L; Charles FR; Zhang T; Gin K, 2019, 'Metagenomic and resistome analysis of a full-scale municipal wastewater treatment plant in Singapore containing membrane bioreactors', Frontiers in Microbiology, 10, http://dx.doi.org/10.3389/fmicb.2019.00172

Zhang G; Li B; Liu J; Luan M; Yue L; Jiang XT; Yu K; Guan Y, 2018, 'The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems', Microbiome, 6, http://dx.doi.org/10.1186/s40168-018-0610-5

Jiang XT; Ye L; Ju F; Li B; Ma LP; Zhang T, 2018, 'Temporal dynamics of activated sludge bacterial communities in two diversity variant full-scale sewage treatment plants', Applied Microbiology and Biotechnology, 102, pp. 9379 - 9388, http://dx.doi.org/10.1007/s00253-018-9287-8

Yin X; Jiang XT; Chai B; Li L; Yang Y; Cole JR; Tiedje JM; Zhang T, 2018, 'ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes', Bioinformatics, 34, pp. 2263 - 2270, http://dx.doi.org/10.1093/bioinformatics/bty053

Feng J; Li B; Jiang X; Yang Y; Wells GF; Zhang T; Li X, 2018, 'Antibiotic resistome in a large-scale healthy human gut microbiota deciphered by metagenomic and network analyses', Environmental microbiology, 20, pp. 355 - 368

Xiong W; Wang Y; Sun Y; Ma L; Zeng Q; Jiang X; Li A; Zeng Z; Zhang T, 2018, 'Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes', Microbiome, 6, pp. 34 - 34

Wang Y; Jiang X-T; Liu L; Li B; Zhang T, 2018, 'High-Resolution Temporal and Spatial Patterns of Virome in Wastewater Treatment Systems', Environmental science & technology

Liu T; Zhang AN; Wang J; Liu S; Jiang X; Dang C; Ma T; Liu S; Chen Q; Xie S; others , 2018, 'Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River', Microbiome, 6, pp. 16 - 16

Jiang X-T; Ye L; Ju F; Wang Y-L; Zhang T, 2018, 'Toward an Intensive Longitudinal Understanding of Activated Sludge Bacterial Assembly and Dynamics', Environmental Science & Technology, 52, pp. 8224 - 8232

Li AD; Ma L; Jiang XT; Zhang T, 2017, 'Cultivation-dependent and high-throughput sequencing approaches studying the co-occurrence of antibiotic resistance genes in municipal sewage system', Applied Microbiology and Biotechnology, 101, pp. 8197 - 8207, http://dx.doi.org/10.1007/s00253-017-8573-1

Xia Y; Li AD; Deng Y; Jiang XT; Li LG; Zhang T, 2017, 'MinION Nanopore sequencing enables correlation between resistome phenotype and genotype of coliform bacteria in municipal sewage', Frontiers in Microbiology, 8, http://dx.doi.org/10.3389/fmicb.2017.02105

Wang Y; Ma L; Mao Y; Jiang X; Xia Y; Yu K; Li B; Zhang T, 2017, 'Comammox in drinking water systems', Water Research, 116, pp. 332 - 341, http://dx.doi.org/10.1016/j.watres.2017.03.042

Yuan K; Xiao S; Jiang X; Yang L; Chen B; Luan T; Lin L; Tam NFY, 2017, 'Effects of endocrine disrupting chemicals (EDCs) on bacterial communities in mangrove sediments', Marine Pollution Bulletin, 122, pp. 122 - 128, http://dx.doi.org/10.1016/j.marpolbul.2017.06.035

Ma L; Li B; Jiang X-T; Wang Y-L; Xia Y; Li A-D; Zhang T, 2017, 'Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey', Microbiome, 5, pp. 154 - 154

Yang Y; Jiang X; Chai B; Ma L; Li B; Zhang A; Cole JR; Tiedje JM; Zhang T, 2016, 'ARGs-OAP: Online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database', Bioinformatics, 32, pp. 2346 - 2351, http://dx.doi.org/10.1093/bioinformatics/btw136

Mao Y; Wang Z; Li L; Jiang X; Zhang X; Ren H; Zhang T, 2016, 'Exploring the shift in structure and function of microbial communities performing biological phosphorus removal', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0161506

Jiang XT; Guo F; Zhang T, 2016, 'Population dynamics of bulking and foaming bacteria in a full-scale wastewater treatment plant over five years', Scientific Reports, 6, http://dx.doi.org/10.1038/srep24180

He Y; Caporaso JG; Jiang X-T; Sheng H-F; Huse SM; Rideout JR; Edgar RC; Kopylova E; Walters WA; Knight R; Zhou H-W, 2015, 'Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity', MICROBIOME, 3, http://dx.doi.org/10.1186/s40168-015-0081-x

Yang Y; Jiang XT; Zhang T, 2014, 'Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes', PLoS ONE, 9, http://dx.doi.org/10.1371/journal.pone.0110947

He Y; Zhou BJ; Deng GH; Jiang XT; Zhang H; Zhou HW, 2013, 'Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons', BMC Microbiology, 13, http://dx.doi.org/10.1186/1471-2180-13-208

Jiang XT; Peng X; Deng GH; Sheng HF; Wang Y; Zhou HW; Tam NFY, 2013, 'Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland', Microbial Ecology, 66, pp. 96 - 104, http://dx.doi.org/10.1007/s00248-013-0238-8

Jiang XT; Zhang H; Sheng HF; Wang Y; He Y; Zou F; Zhou HW, 2012, 'Two-stage clustering (TSC): A pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons', PLoS ONE, 7, http://dx.doi.org/10.1371/journal.pone.0030230

Zhou HW; Li DF; Tam NFY; Jiang XT; Zhang H; Sheng HF; Qin J; Liu X; Zou F, 2011, 'BIPES, a cost-effective high-throughput method for assessing microbial diversity', ISME Journal, 5, pp. 741 - 749, http://dx.doi.org/10.1038/ismej.2010.160

Wu JY; Jiang XT; Jiang YX; Lu SY; Zou F; Zhou HW, 2010, 'Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method', BMC Microbiology, 10, http://dx.doi.org/10.1186/1471-2180-10-255

Software / Code

Jiang X, 2016, ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database, Github, https://github.com/biofuture/Ublastx_stageone, OpenSource, Published: 17 August 2016, Software / Code

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