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Journal articles

Yin X; Chen X; Jiang XT; Yang Y; Li B; Shum MHH; Lam TTY; Leung GM; Rose J; Sanchez-Cid C; Vogel TM; Walsh F; Berendonk TU; Midega J; Uchea C; Frigon D; Wright GD; Bezuidenhout C; Picão RC; Ahammad SZ; Nielsen PH; Hugenholtz P; Ashbolt NJ; Corno G; Fatta-Kassinos D; Bürgmann H; Schmitt H; Cha CJ; Pruden A; Smalla K; Cytryn E; Zhang Y; Yang M; Zhu YG; Dechesne A; Smets BF; Graham DW; Gillings MR; Gaze WH; Manaia CM; van Loosdrecht MCM; Alvarez PJJ; Blaser MJ; Tiedje JM; Topp E; Zhang T, 2023, 'Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples', Environmental Science and Technology, 57, pp. 9713 - 9721,

Liou JM; Jiang XT; Chen CC; Luo JC; Bair MJ; Chen PY; Chou CK; Fang YJ; Chen MJ; Chen CC; Lee JY; Yang TH; Yu CC; Kuo CC; Chiu MC; Chen CY; Shun CT; Hu WH; Tsai MH; Hsu YC; Tseng CH; Chang CY; Lin JT; El-Omar EM; Wu MS; Wu CY; Lee YC; Tseng PH; Wu JY; Tai CM; Lee CT; Wang WL, 2023, 'Second-line levofloxacin-based quadruple therapy versus bismuth-based quadruple therapy for Helicobacter pylori eradication and long-term changes to the gut microbiota and antibiotic resistome: a multicentre, open-label, randomised controlled trial', The Lancet Gastroenterology and Hepatology, 8, pp. 228 - 241,

Yin X; Zheng X; Li L; Zhang AN; Jiang XT; Zhang T, 2023, 'ARGs-OAP v3.0: Antibiotic-Resistance Gene Database Curation and Analysis Pipeline Optimization', Engineering,

Zhang F; Gia A; Chen G; Gong L; Behary J; Hold GL; Zekry A; Tang X; Sun Y; El-Omar E; Jiang XT, 2022, 'Critical Assessment of Whole Genome and Viral Enrichment Shotgun Metagenome on the Characterization of Stool Total Virome in Hepatocellular Carcinoma Patients', Viruses, 15, pp. 53 - 53,

O'Donnell M; Teasdale S; Chua X-Y; Hardman J; Wu N; Curtis J; Samaras K; Bolton P; Morris M; Shannon-Weickert C; Purves-Tyson T; El-Assaad F; Jiang X; Hold G; El-Omar E, 2022, 'The role of the microbiome in the metabolic health of people with schizophrenia and related psychoses: cross-sectional and pre-post lifestyle intervention analyses', Pathogens

Ma L; Jiang XT; Guan L; Li B; Zhang T, 2022, 'Nationwide biogeography and health implications of bacterial communities in household drinking water', Water Research, 215, pp. 118238,

Li Y; Zhang F; Zheng H; Kalasabail S; Hicks C; Fung KY; Preaudet A; Putoczki T; Beretov J; Millar EKA; El-Omar E; Jiang XT; Yim HCH, 2022, 'Fecal DNA Virome Is Associated with the Development of Colorectal Neoplasia in a Murine Model of Colorectal Cancer', Pathogens, 11,

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'Corrigendum: The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy(Front. Cell. Infect. Microbiol., (2022), 12, (646165), 10.3389/fcimb.2022.646165)', Frontiers in Cellular and Infection Microbiology, 12, pp. 895332,

Susic DF; Wang L; Roberts LM; Bai M; Gia A; McGovern E; Jiang XT; Davis GK; El-Omar E; Henry A, 2022, 'The P4 Study: Postpartum Maternal and Infant Faecal Microbiome 6 Months After Hypertensive Versus Normotensive Pregnancy', Frontiers in Cellular and Infection Microbiology, 12, pp. 646165,

Behary J; Amorim N; Jiang XT; Raposo A; Gong L; McGovern E; Ibrahim R; Chu F; Stephens C; Jebeili H; Fragomeli V; Koay YC; Jackson M; O’Sullivan J; Weltman M; McCaughan G; El-Omar E; Zekry A, 2021, 'Gut microbiota impact on the peripheral immune response in non-alcoholic fatty liver disease related hepatocellular carcinoma', Nature Communications, 12, pp. 187,

Wang Y; Ye J; Ju F; Liu L; Boyd JA; Deng Y; Parks DH; Jiang X; Yin X; Woodcroft BJ; Tyson GW; Hugenholtz P; Polz MF; Zhang T, 2021, 'Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years', Microbiome, 9,

Wang Y; Qin W; Jiang X; Ju F; Mao Y; Zhang A; Stahl DA; Zhang T, 2021, 'Seasonal prevalence of ammonia-oxidizing archaea in a full-scale municipal wastewater treatment plant treating saline wastewater revealed by a 6-year time-series analysis', Environmental Science and Technology, 55, pp. 2662 - 2673,

Liu J; Li B; Wang Y; Zhang G; Jiang X; Li X, 2019, 'Passage and community changes of filterable bacteria during microfiltration of a surface water supply', Environment International, 131, pp. 104998 - 104998,

Ng C; Tan B; Jiang XT; Gu X; Chen H; Schmitz BW; Haller L; Charles FR; Zhang T; Gin K, 2019, 'Metagenomic and resistome analysis of a full-scale municipal wastewater treatment plant in Singapore containing membrane bioreactors', Frontiers in Microbiology, 10, pp. 172,

Zhang G; Li B; Liu J; Luan M; Yue L; Jiang XT; Yu K; Guan Y, 2018, 'The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems', Microbiome, 6,

Jiang XT; Ye L; Ju F; Li B; Ma LP; Zhang T, 2018, 'Temporal dynamics of activated sludge bacterial communities in two diversity variant full-scale sewage treatment plants', Applied Microbiology and Biotechnology, 102, pp. 9379 - 9388,

Yin X; Jiang XT; Chai B; Li L; Yang Y; Cole JR; Tiedje JM; Zhang T, 2018, 'ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes', Bioinformatics, 34, pp. 2263 - 2270,

Feng J; Li B; Jiang X; Yang Y; Wells GF; Zhang T; Li X, 2018, 'Antibiotic resistome in a large-scale healthy human gut microbiota deciphered by metagenomic and network analyses', Environmental microbiology, 20, pp. 355 - 368,

Xiong W; Wang Y; Sun Y; Ma L; Zeng Q; Jiang X; Li A; Zeng Z; Zhang T, 2018, 'Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes', Microbiome, 6, pp. 34 - 34,

Wang Y; Jiang X-T; Liu L; Li B; Zhang T, 2018, 'High-Resolution Temporal and Spatial Patterns of Virome in Wastewater Treatment Systems', Environmental science & technology

Liu T; Zhang AN; Wang J; Liu S; Jiang X; Dang C; Ma T; Liu S; Chen Q; Xie S; others , 2018, 'Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River', Microbiome, 6, pp. 16 - 16,

Jiang X-T; Ye L; Ju F; Wang Y-L; Zhang T, 2018, 'Toward an Intensive Longitudinal Understanding of Activated Sludge Bacterial Assembly and Dynamics', Environmental Science & Technology, 52, pp. 8224 - 8232

Li AD; Ma L; Jiang XT; Zhang T, 2017, 'Cultivation-dependent and high-throughput sequencing approaches studying the co-occurrence of antibiotic resistance genes in municipal sewage system', Applied Microbiology and Biotechnology, 101, pp. 8197 - 8207,

Xia Y; Li AD; Deng Y; Jiang XT; Li LG; Zhang T, 2017, 'MinION Nanopore sequencing enables correlation between resistome phenotype and genotype of coliform bacteria in municipal sewage', Frontiers in Microbiology, 8,

Wang Y; Ma L; Mao Y; Jiang X; Xia Y; Yu K; Li B; Zhang T, 2017, 'Comammox in drinking water systems', Water Research, 116, pp. 332 - 341,

Yuan K; Xiao S; Jiang X; Yang L; Chen B; Luan T; Lin L; Tam NFY, 2017, 'Effects of endocrine disrupting chemicals (EDCs) on bacterial communities in mangrove sediments', Marine Pollution Bulletin, 122, pp. 122 - 128,

Ma L; Li B; Jiang X-T; Wang Y-L; Xia Y; Li A-D; Zhang T, 2017, 'Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey', Microbiome, 5, pp. 154 - 154,

Yang Y; Jiang X; Chai B; Ma L; Li B; Zhang A; Cole JR; Tiedje JM; Zhang T, 2016, 'ARGs-OAP: Online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database', Bioinformatics, 32, pp. 2346 - 2351,

Mao Y; Wang Z; Li L; Jiang X; Zhang X; Ren H; Zhang T, 2016, 'Exploring the shift in structure and function of microbial communities performing biological phosphorus removal', PLoS ONE, 11, pp. e0161506,

Jiang XT; Guo F; Zhang T, 2016, 'Population dynamics of bulking and foaming bacteria in a full-scale wastewater treatment plant over five years', Scientific Reports, 6,

He Y; Caporaso JG; Jiang X-T; Sheng H-F; Huse SM; Rideout JR; Edgar RC; Kopylova E; Walters WA; Knight R; Zhou H-W, 2015, 'Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity', MICROBIOME, 3,

Yang Y; Jiang XT; Zhang T, 2014, 'Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes', PLoS ONE, 9, pp. e110947,

He Y; Zhou BJ; Deng GH; Jiang XT; Zhang H; Zhou HW, 2013, 'Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons', BMC Microbiology, 13,

Jiang XT; Peng X; Deng GH; Sheng HF; Wang Y; Zhou HW; Tam NFY, 2013, 'Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland', Microbial Ecology, 66, pp. 96 - 104,

Jiang XT; Zhang H; Sheng HF; Wang Y; He Y; Zou F; Zhou HW, 2012, 'Two-stage clustering (TSC): A pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons', PLoS ONE, 7, pp. e30230,

Zhou HW; Li DF; Tam NFY; Jiang XT; Zhang H; Sheng HF; Qin J; Liu X; Zou F, 2011, 'BIPES, a cost-effective high-throughput method for assessing microbial diversity', ISME Journal, 5, pp. 741 - 749,

Wu JY; Jiang XT; Jiang YX; Lu SY; Zou F; Zhou HW, 2010, 'Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method', BMC Microbiology, 10,

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