Select Publications

Journal articles

Murray JM; Murray DD; Schvoerer E; Akand EH, 2024, 'SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing', Journal of Infection, 88, pp. 173 - 179, http://dx.doi.org/10.1016/j.jinf.2024.01.004

Hoyle JS; Mann C; Akand EH; Downard KM, 2023, 'Charting and tracking the evolution of the SARS CoV-2 coronavirus variants of concern with protein mass spectrometry', Analyst, 148, pp. 2834 - 2843, http://dx.doi.org/10.1039/d3an00614j

Akand EH; Murray JM, 2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, 22, http://dx.doi.org/10.1186/s12859-020-03901-y

Hartard C; Fenaux H; Gentilhomme A; Murray JM; Akand E; Laugel E; Berger S; Maul A; de Rougemont A; Jeulin H; Remen T; Bensenane M; Bronowicki JP; Gantzer C; Bertrand I; Schvoerer E, 2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513

Akand EH; Downard KM, 2021, 'Evolution of Type B Influenza Virus Using a Mass Spectrometry Based Phylonumerics Approach', Evolutionary Biology, 48, pp. 259 - 268, http://dx.doi.org/10.1007/s11692-021-09535-z

Akand EH; Maher SJ; Murray JM, 2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0243391

Akand E; Downard K, 2020, 'Reimaging the Tree of Life using a Mass Based Phylonumerics Approach', Evolutionary Biology, 47, pp. 76 - 84, http://dx.doi.org/10.1007/s11692-020-09490-1

Akand E; Downard K, 2019, 'Mechanisms of Antiviral Resistance in Influenza Neuraminidase Revealed by a Mass Spectrometry Based Phylonumerics Approach', Molecular Phylogenetics and Evolution, 135, pp. 286 - 296, http://dx.doi.org/10.1016/j.ympev.2019.03.009

Akand EH; Downard KM, 2018, 'Ancestral and Compensatory Mutations that Promote Antiviral Resistance in N1 Neuraminidase Revealed by a Phylonumerics Approach', Journal of Molecular Evolution, 86, pp. 546 - 546, http://dx.doi.org/10.1007/s00239-018-9866-4

Akand EH; Downard KM, 2018, 'Identification of Epistatic Mutations and Insights into the Evolution of the Influenza Virus Using a Mass-Based Protein Phylogenetic Approach', Molecular Phylogenetics and Evolution, 121, pp. 132 - 138, http://dx.doi.org/10.1016/j.ympev.2018.01.009

Akand EH; Downard KM, 2017, 'Mutational analysis employing a phylogenetic mass tree approach in a study of the evolution of the influenza virus', Molecular Phylogenetics and Evolution, 112, pp. 209 - 217, http://dx.doi.org/10.1016/j.ympev.2017.04.005

Akand E; Bain M; Temple M, 2010, 'Learning with gene ontology annotation using feature selection and construction', Applied Artificial Intelligence, 24, pp. 5 - 38, http://dx.doi.org/10.1080/08839510903448627

Conference Papers

Akand EH; Bain ME, 2007, 'Learning from ontological annotation: an application of formal concept analysis to feature construction in the gene ontology', in Australasian ontology workshop 2007, Australasian ontology workshop 2007, Gold Coast, Qld, presented at Australasian ontology workshop 2007, Gold Coast, Qld, 02 December 2007


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