Select Publications
Journal articles
2024, 'SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing', Journal of Infection, 88, pp. 173 - 179, http://dx.doi.org/10.1016/j.jinf.2024.01.004
,2023, 'Charting and tracking the evolution of the SARS CoV-2 coronavirus variants of concern with protein mass spectrometry', Analyst, 148, pp. 2834 - 2843, http://dx.doi.org/10.1039/d3an00614j
,2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, 22, http://dx.doi.org/10.1186/s12859-020-03901-y
,2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513
,2021, 'Evolution of Type B Influenza Virus Using a Mass Spectrometry Based Phylonumerics Approach', Evolutionary Biology, 48, pp. 259 - 268, http://dx.doi.org/10.1007/s11692-021-09535-z
,2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0243391
,2020, 'Reimaging the Tree of Life using a Mass Based Phylonumerics Approach', Evolutionary Biology, 47, pp. 76 - 84, http://dx.doi.org/10.1007/s11692-020-09490-1
,2019, 'Mechanisms of Antiviral Resistance in Influenza Neuraminidase Revealed by a Mass Spectrometry Based Phylonumerics Approach', Molecular Phylogenetics and Evolution, 135, pp. 286 - 296, http://dx.doi.org/10.1016/j.ympev.2019.03.009
,2018, 'Ancestral and Compensatory Mutations that Promote Antiviral Resistance in N1 Neuraminidase Revealed by a Phylonumerics Approach', Journal of Molecular Evolution, 86, pp. 546 - 546, http://dx.doi.org/10.1007/s00239-018-9866-4
,2018, 'Identification of Epistatic Mutations and Insights into the Evolution of the Influenza Virus Using a Mass-Based Protein Phylogenetic Approach', Molecular Phylogenetics and Evolution, 121, pp. 132 - 138, http://dx.doi.org/10.1016/j.ympev.2018.01.009
,2017, 'Mutational analysis employing a phylogenetic mass tree approach in a study of the evolution of the influenza virus', Molecular Phylogenetics and Evolution, 112, pp. 209 - 217, http://dx.doi.org/10.1016/j.ympev.2017.04.005
,2010, 'Learning with gene ontology annotation using feature selection and construction', Applied Artificial Intelligence, 24, pp. 5 - 38, http://dx.doi.org/10.1080/08839510903448627
,Conference Papers
2007, 'Learning from ontological annotation: an application of formal concept analysis to feature construction in the gene ontology', in Australasian ontology workshop 2007, Australasian ontology workshop 2007, Gold Coast, Qld, presented at Australasian ontology workshop 2007, Gold Coast, Qld, 02 December 2007
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