Select Publications

Journal articles

Murray JM; Murray DD; Schvoerer E; Akand EH, 2024, 'SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing', Journal of Infection, 88, pp. 173 - 179, http://dx.doi.org/10.1016/j.jinf.2024.01.004

Hoyle JS; Mann C; Akand EH; Downard KM, 2023, 'Charting and tracking the evolution of the SARS CoV-2 coronavirus variants of concern with protein mass spectrometry', Analyst, 148, pp. 2834 - 2843, http://dx.doi.org/10.1039/d3an00614j

Akand EH; Murray JM, 2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, 22, http://dx.doi.org/10.1186/s12859-020-03901-y

Hartard C; Fenaux H; Gentilhomme A; Murray JM; Akand E; Laugel E; Berger S; Maul A; de Rougemont A; Jeulin H; Remen T; Bensenane M; Bronowicki JP; Gantzer C; Bertrand I; Schvoerer E, 2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513

Akand EH; Downard KM, 2021, 'Evolution of Type B Influenza Virus Using a Mass Spectrometry Based Phylonumerics Approach', Evolutionary Biology, 48, pp. 259 - 268, http://dx.doi.org/10.1007/s11692-021-09535-z

Akand EH; Maher SJ; Murray JM, 2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0243391

Akand E; Downard K, 2020, 'Reimaging the Tree of Life using a Mass Based Phylonumerics Approach', Evolutionary Biology, 47, pp. 76 - 84, http://dx.doi.org/10.1007/s11692-020-09490-1

Akand E; Downard K, 2019, 'Mechanisms of Antiviral Resistance in Influenza Neuraminidase Revealed by a Mass Spectrometry Based Phylonumerics Approach', Molecular Phylogenetics and Evolution, 135, pp. 286 - 296, http://dx.doi.org/10.1016/j.ympev.2019.03.009

Akand EH; Downard KM, 2018, 'Ancestral and Compensatory Mutations that Promote Antiviral Resistance in N1 Neuraminidase Revealed by a Phylonumerics Approach', Journal of Molecular Evolution, 86, pp. 546 - 546, http://dx.doi.org/10.1007/s00239-018-9866-4

Akand EH; Downard KM, 2018, 'Identification of Epistatic Mutations and Insights into the Evolution of the Influenza Virus Using a Mass-Based Protein Phylogenetic Approach', Molecular Phylogenetics and Evolution, 121, pp. 132 - 138, http://dx.doi.org/10.1016/j.ympev.2018.01.009

Akand EH; Downard KM, 2017, 'Mutational analysis employing a phylogenetic mass tree approach in a study of the evolution of the influenza virus', Molecular Phylogenetics and Evolution, 112, pp. 209 - 217, http://dx.doi.org/10.1016/j.ympev.2017.04.005

Akand E; Bain M; Temple M, 2010, 'Learning with gene ontology annotation using feature selection and construction', Applied Artificial Intelligence, 24, pp. 5 - 38, http://dx.doi.org/10.1080/08839510903448627


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