Select Publications

Journal articles

Hold GL; Rabkin CS; Chow WH; Smith MG; Gammon MD; Risch HA; Vaughan TL; McColl KEL; Lissowska J; Zatonski W; Schoenberg JB; Blot WJ; Mowat NAG; Fraumeni JF; El-Omar EM, 2007, 'A Functional Polymorphism of Toll-Like Receptor 4 Gene Increases Risk of Gastric Carcinoma and Its Precursors', Gastroenterology, 132, pp. 905 - 912, http://dx.doi.org/10.1053/j.gastro.2006.12.026

Smith MG; Hold GL; Tahara E; El-Omar EM, 2006, 'Cellular and molecular aspects of gastric cancer', World Journal of Gastroenterology, 12, pp. 2979 - 2990, http://dx.doi.org/10.3748/wjg.v12.i19.2979

Macarthur M; Sharp L; Hold GL; Little J; El-Omar EM, 2005, 'The role of cytokine gene polymorphisms in colorectal cancer and their interaction with aspirin use in the Northeast of Scotland', Cancer Epidemiology Biomarkers and Prevention, 14, pp. 1613 - 1618, http://dx.doi.org/10.1158/1055-9965.EPI-04-0878

Garza-González E; Bosques-Padilla FJ; El-Omar E; Hold G; Tijerina-Menchaca R; Maldonado-Garza HJ; Pérez-Pérez GI, 2005, 'Role of the polymorphic IL-1B, IL-1RN and TNF-A genes in distal gastric cancer in Mexico', International Journal of Cancer, 114, pp. 237 - 241, http://dx.doi.org/10.1002/ijc.20718

Hope ME; Hold GL; Kain R; El-Omar EM, 2005, 'Sporadic colorectal cancer - Role of the commensal microbiota', FEMS Microbiology Letters, 244, pp. 1 - 7, http://dx.doi.org/10.1016/j.femsle.2005.01.029

Hird HJ; Hold GL; Chisholm J; Reece P; Russell VJ; Brown J; Goodier R; MacArthur R, 2005, 'Development of a method for the quantification of haddock (Melanogrammus aeglefinus) in commercial products using real-time PCR', European Food Research and Technology, 220, pp. 633 - 637, http://dx.doi.org/10.1007/s00217-004-1050-y

Maxwell FJ; Duncan SH; Hold G; Stewart CS, 2004, 'Isolation, growth on prebiotics and probiotic potential of novel bifidobacteria from pigs', Anaerobe, 10, pp. 33 - 39, http://dx.doi.org/10.1016/j.anaerobe.2003.11.005

Macarthur M; Hold GL; El-Omar EM, 2004, 'Inflammation and Cancer II. Role of chronic inflammation and cytokine gene polymorphisms in the pathogenesis of gastrointestinal malignancy', American Journal of Physiology - Gastrointestinal and Liver Physiology, 286, http://dx.doi.org/10.1152/ajpgi.00475.2003

Strömpl C; Hold GL; Lünsdorf H; Graham J; Gallacher S; Abraham WR; Moore ERB; Timmis KN, 2003, 'Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech', International Journal of Systematic and Evolutionary Microbiology, 53, pp. 1901 - 1906, http://dx.doi.org/10.1099/ijs.0.02635-0

Calo-Mata P; Sotelo CG; Pérez-Martín RI; Rehbein H; Hold GL; Russell VJ; Pryde S; Quinteiro J; Rey-Méndez M; Rosa C; Santos AT, 2003, 'Identification of gadoid fish species using DNA-based techniques', European Food Research and Technology, 217, pp. 259 - 264, http://dx.doi.org/10.1007/s00217-003-0735-y

Hold GL; Schwiertz A; Aminov RI; Blaut M; Flint HJ, 2003, 'Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces', Applied and Environmental Microbiology, 69, pp. 4320 - 4324, http://dx.doi.org/10.1128/AEM.69.7.4320-4324.2003

Garza-González E; Hold G; Pérez-Pérez GI; Bosques-Padilla FJ; Tijerina-Menchaca R; Maldonado-Garza HJ; el-Omar E, 2003, 'Role of polymorphism of certain cytokines in gastric cancer in Mexico. Preliminary results', Revista de gastroenterología de México, 68, pp. 107 - 112

Troost E; Hold GL; Smith MG; Chow WH; Rabkin CS; McColl KEL; El-Omar EM, 2003, 'The role of interleukin-1beta and other potential genetic markers as indicators of gastric cancer risk.', Canadian journal of gastroenterology = Journal canadien de gastroenterologie, 17 Suppl B, http://dx.doi.org/10.1155/2003/397060

Pryde SE; Duncan SH; Hold GL; Stewart CS; Flint HJ, 2002, 'The microbiology of butyrate formation in the human colon', FEMS Microbiology Letters, 217, pp. 133 - 139, http://dx.doi.org/10.1016/S0378-1097(02)01106-0

Pryde S, 2002, 'The microbiology of butyrate formation in the human colon', FEMS Microbiology Letters, 217, pp. 133 - 139, http://dx.doi.org/10.1016/s0378-1097(02)01106-0

Rehbein H; Sotelo CG; Perez-Martin RI; Chapela-Garrido MJ; Hold GL; Russell VJ; Pryde SE; Santos AT; Rosa C; Quinteiro J; Rey-Mendez M, 2002, 'Differentiation of raw or processed eel by PCR-based techniques: Restriction fragment length polymorphism analysis (RFLP) and single strand conformation polymorphism analysis (SSCP)', European Food Research and Technology, 214, pp. 171 - 177, http://dx.doi.org/10.1007/s00217-001-0457-y

Duncan SH; Hold GL; Harmsen HJM; Stewart CS; Flint HJ, 2002, 'Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov', International Journal of Systematic and Evolutionary Microbiology, 52, pp. 2141 - 2146, http://dx.doi.org/10.1099/ijs.0.02241-0

Duncan SH, 2002, 'Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov', INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 52, pp. 2141 - 2146, http://dx.doi.org/10.1099/ijs.0.02241-0

Duncan SH; Hold GL; Barcenilla A; Stewart CS; Flint HJ, 2002, 'Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces', International Journal of Systematic and Evolutionary Microbiology, 52, pp. 1615 - 1620, http://dx.doi.org/10.1099/ijs.0.02143-0

Hold GL; Pryde SE; Russell VJ; Furrie E; Flint HJ, 2002, 'Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis', FEMS Microbiology Ecology, 39, pp. 33 - 39, http://dx.doi.org/10.1016/S0168-6496(01)00190-8

Rehbein H; Sotelo CG; Perez-Martin RI; Chapela-Garrido MJ; Hold GL; Russell VJ; Pryde SE; Santos AT; Rosa C; Quinteiro J; Rey-Mendez M, 2002, 'Differentiation of raw or processed eel by PCR-based techniques: restriction fragment length polymorphism analysis (RFLP) and single strand conformation polymorphism analysis (SSCP)', EUROPEAN FOOD RESEARCH AND TECHNOLOGY, 214, pp. 171 - 177, http://dx.doi.org/10.1007/s00217-001-0457-y

Schwiertz A; Hold GL; Duncan SH; Gruhl B; Collins MD; Lawson PA; Flint HJ; Blaut M, 2002, 'Anaerostipes caccae gen. nov., sp. nov., a new saccharolytic, acetate-utilising, butyrate-producing bacterium from human faeces', Systematic and Applied Microbiology, 25, pp. 46 - 51, http://dx.doi.org/10.1078/0723-2020-00096

Chapela MJ; Sotelo CG; Calo-Mata P; Pérez-Martín RI; Rehbein H; Hold GL; Quinteiro J; Rey-Méndez M; Rosa C; Santos AT, 2002, 'Identification of Cephalopod Species (Ommastrephidae and Loliginidae) in Seafood Products by Forensically Informative Nucleotide Sequencing (FINS)', Journal of Food Science, 67, pp. 1672 - 1676, http://dx.doi.org/10.1111/j.1365-2621.2002.tb08703.x

Hold G, 2002, 'Assessment of microbial diversity in human colonic samples by 16S rDNA sequence analysis', FEMS Microbiology Ecology, 39, pp. 33 - 39, http://dx.doi.org/10.1016/s0168-6496(01)00190-8

Quinteiro J; Vidal R; Izquierdo M; Sotelo CG; Chapela MJ; Pérez-Martín RI; Rehbein H; Hold GL; Russell VJ; Pryde SE; Rosa C; Santos AT; Rey-Méndez M, 2001, 'Identification of hake species (Merluccius genus) using sequencing and PCR-RFLP analysis of mitochondrial DNA control region sequences', Journal of Agricultural and Food Chemistry, 49, pp. 5108 - 5114, http://dx.doi.org/10.1021/jf010421f

Hold GL; Smith EA; Rappé MS; Maas EW; Moore ERB; Stroempl C; Stephen JR; Prosser JI; Birkbeck TH; Gallacher S, 2001, 'Characterisation of bacterial communities associated with toxic and non-toxic dinoflagellates: Alexandrium spp. and Scrippsiella trochoidea', FEMS Microbiology Ecology, 37, pp. 161 - 173, http://dx.doi.org/10.1016/S0168-6496(01)00157-X

Hold GL; Russell VJ; Pryde SE; Rehbein H; Quinteiro J; Vidal R; Rey-Mendez M; Sotelo CG; Perez-Martin RI; Santos AT; Rosa C, 2001, 'Development of a DNA-based method aimed at identifying the fish species present in food products', Journal of Agricultural and Food Chemistry, 49, pp. 1175 - 1179, http://dx.doi.org/10.1021/jf001149x

Hold GL; Smith EA; Harry Birkbeck T; Gallacher S, 2001, 'Comparison of paralytic shellfish toxin (PST) production by the dinoflagellates Alexandrium lusitanicum NEPCC 253 and Alexandrium tamarense NEPCC 407 in the presence and absence of bacteria', FEMS Microbiology Ecology, 36, pp. 223 - 234, http://dx.doi.org/10.1016/S0168-6496(01)00136-2

Sotelo CG; Calo-Mata P; Chapela MJ; Pérez-Martín RI; Rehbein H; Hold GL; Russell VJ; Pryde S; Quinteiro J; Izquierdo M; Rey-Méndez M; Rosa C; Santos AT, 2001, 'Identification of flatfish (Pleuronectiforme) species using DNA-based techniques', Journal of Agricultural and Food Chemistry, 49, pp. 4562 - 4569, http://dx.doi.org/10.1021/jf010452a

Hold GL; Russell VJ; Pryde SE; Rehbein H; Quinteiro J; Rey-Mendez M; Sotelo CG; Pérez-Martin RI; Santos AT; Rosa C, 2001, 'Validation of a PCR-RFLP based method for the identification of salmon species in food products', European Food Research and Technology, 212, pp. 385 - 389, http://dx.doi.org/10.1007/s002170000237

Hold G, 2001, 'Characterisation of bacterial communities associated with toxic and non-toxic dinoflagellates: Alexandrium spp. and Scrippsiella trochoidea', FEMS Microbiology Ecology, 37, pp. 161 - 173, http://dx.doi.org/10.1016/s0168-6496(01)00157-x

Hold G, 2001, 'Comparison of paralytic shellfish toxin (PST) production by the dinoflagellates Alexandrium lusitanicum NEPCC 253 and Alexandrium tamarense NEPCC 407 in the presence and absence of bacteria', FEMS Microbiology Ecology, 36, pp. 223 - 234, http://dx.doi.org/10.1016/s0168-6496(01)00136-2

Russell VJ; Hold GL; Pryde SE; Rehbein H; Quinteiro J; Rey-Mendez M; Sotelo CG; Pérez-Martin RI; Santos AT; Rosa C, 2000, 'Use of restriction fragment length polymorphism to distinguish between salmon species', Journal of Agricultural and Food Chemistry, 48, pp. 2184 - 2188, http://dx.doi.org/10.1021/jf991213e

Conference Papers

Rimmer P; Scott G; Quraishi MN; Hazel K; Cooney R; Hold G; Zhang F; Gordon M; Iqbal T; Hansen R, 2024, 'P107 Is gut microbiome diversity important at IBD onset? A systematic review of the literature and meta-analysis of alpha diversity data', in Poster Presentations, BMJ Publishing Group Ltd and British Society of Gastroenterology, pp. A114 - A115, presented at BSG LIVE’24, 17-20 June 2024, ICC Birmingham, http://dx.doi.org/10.1136/gutjnl-2024-bsg.189

Reveley H; Frank L; Javadpour A; Samocha-Bonet D; Hold G; Lambert K, 2022, 'Emulsifier intake in a cohort of Australians with inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 219 - 219, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000852585700328&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Mcilroy J; Nalagatla N; Hansen R; Hart A; Hold G, 2018, 'FMT AS A TREATMENT FOR IBD: A NATIONAL SURVEY OF GASTROENTEROLOGISTS IN THE UK', in GUT, BMJ PUBLISHING GROUP, ENGLAND, Liverpool, pp. A86 - A86, presented at Annual General Meeting of the British-Society-of-Gastroenterology, ENGLAND, Liverpool, 04 June 2018 - 07 June 2018, http://dx.doi.org/10.1136/gutjnl-2018-BSGAbstracts.171

McIlroy J; Nalagatla N; Hansen R; Hart A; Hold G, 2018, 'FMT as a treatment for IBD: A national survey of gastroenterologists in the UK', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, pp. S443 - S444, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000427318902042&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Garg M; Hendy P; Shaw S; Ding JN; Hold G; Hart A, 2017, 'Vitamin D supplementation reduces fecal calprotectin and may alter microbiota composition in patients with active ulcerative colitis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 117 - 117, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000407897100212&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Gemmell MR; Berry SH; Mukhopadhya I; Nielsen HL; Nielsen H; Hold GL, 2017, 'DEFINING GENOME DIVERSITY OF CAMPYLOBACTER CONCISUS BETWEEN ORAL, FAECAL AND COLONIC BIOPSY ISOLATES', in GUT, BMJ PUBLISHING GROUP, ENGLAND, Manchester, pp. A129 - A129, presented at Annual General Meeting of the British-Society-of-Gastroenterology (BSG), ENGLAND, Manchester, 19 June 2017 - 22 June 2017, http://dx.doi.org/10.1136/gutjnl-2017-314472.252

Gemmell M; Hsu T; Berry SH; Mukhopadhya I; Hansen R; Michaud M; El-Omar EM; Nielsen HL; Nielsen H; Huttenhower C; Garrett W; Hold GL, 2017, 'ELUCIDATING THE PATHOGENIC POTENTIAL OF THE INTESTINAL PATHOGEN CAMPYLOBACTER SHOWAE', in GUT, BMJ PUBLISHING GROUP, ENGLAND, Manchester, pp. A138 - A138, presented at Annual General Meeting of the British-Society-of-Gastroenterology (BSG), ENGLAND, Manchester, 19 June 2017 - 22 June 2017, http://dx.doi.org/10.1136/gutjnl-2017-314472.271

Mukhopadhya I; Murray G; Duncan L; Yuecel R; Shattock R; Kelly C; Iannelli F; Pozzi G; El-Omar E; Hold G; Hijazi K, 2016, 'Transporters for Antiretroviral Drugs in Colorectal CD4+T Cells and Circulating alpha 4 beta 7 Integrin CD4+T Cells: Implications for HIV Microbicides', in AIDS RESEARCH AND HUMAN RETROVIRUSES, MARY ANN LIEBERT, INC, IL, Chicago, pp. 353 - 353, presented at Conference on HIV Research for Prevention (HIV R4P), IL, Chicago, 17 October 2016 - 20 October 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000386774600656&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ferrand J; Hold GL; Ferrero RL; El-Omar EM; Gantier M, 2016, 'Toll-like receptor 8 polymorphisms in Helicobacter pylori infection', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY-BLACKWELL, AUSTRALIA, Melbourne, pp. 637 - 637, presented at International Congress of Immunology (ICI), AUSTRALIA, Melbourne, 21 August 2016 - 26 August 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000383610401470&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Hay A; Christopoulou CA; Murray GI; El-Omar EM; Hold GL; McLean MH, 2016, 'CYTOPLASMIC EXPRESSION OF HMGB1 IS ASSOCIATED WITH EARLY COLORECTAL CARCINOGENESIS', in GUT, BMJ PUBLISHING GROUP, pp. A192 - A192, http://dx.doi.org/10.1136/gutjnl-2016-312388.354

Mukhopadhya I; Hsu T; Nielsen H; Nielsen H; Berry S; Huttenhower C; Hold GL, 2016, 'ELUCIDATING THE ROLE OF NON JEJUNI/COLI-CAMPYLOBACTER IN THE DEVELOPMENT OF COLORECTAL CANCER UTILISING COMPARATIVE GENOMICS TO STUDY THEIR PATHOGENIC POTENTIAL', in GUT, BMJ PUBLISHING GROUP, pp. A188 - A189, http://dx.doi.org/10.1136/gutjnl-2016-312388.347

Lalwani S; Mukhopadhya A; Fraser A; Hold GL; Bailey L; Vijayan B; English S; Mcleman L, 2016, 'NATURAL HISTORY OF CIRRHOSIS IN A COHORT OF PATIENTS UNDERGOING STRUCTURED SURVEILLANCE FOR HEPATOCELLULAR CARCINOMA: RESULTS FROM THE ABERDEEN SURVEILLANCE COHORT', in GUT, BMJ PUBLISHING GROUP, pp. A158 - A159, http://dx.doi.org/10.1136/gutjnl-2016-312388.286

Smith-Palmer A; Murdoch H; Hunt A; Mukhopadhya I; Hold G; Cameron C, 2015, 'Evaluating the impact of a national rotavirus vaccine programme on circulating strain types and identifying possible vaccine failures', in JOURNAL OF CLINICAL VIROLOGY, ELSEVIER SCIENCE BV, pp. S68 - S68, http://dx.doi.org/10.1016/j.jcv.2015.07.160

Mukhopadhya I; Berry S; Hunt A; Murdoch H; Smith-Palmer A; Hold GL, 2015, 'GENOTYPING OF ROTAVIRUS ISOLATES PRIOR TO THE INTRODUCTION OF THE ROTAVIRUS VACCINE IN SCOTLAND AND EARLY INDICATIONS OF THE IMPACT OF THE VACCINE', in GUT, BMJ PUBLISHING GROUP, ENGLAND, London, pp. A510 - A511, presented at 2nd Digestive-Disorders-Federation Conference, ENGLAND, London, 22 June 2015 - 25 June 2015, http://dx.doi.org/10.1136/gutjnl-2015-309861.1116

Kennedy NA; Walker AW; Berry SH; Lamb CA; Lewis S; Mansfield JC; Parkes M; Parkhill J; Probert C; Read D; Satsangi J; Simpkins RL; Tomlinson D; Tremelling M; Nutland SL; Hold GL; Lees CW, 2015, 'The Impact of NOD2 Variants on Gut Microbiota in Crohn's Disease and Healthy Controls', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, DC, Washington, pp. S718 - S718, presented at 46th Annual Digestive Disease Week (DDW), DC, Washington, 16 May 2015 - 19 May 2015, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000360118800417&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Mukhopadhya I; Berry S; El-Omar EM; Thomson J; Hold GL; Hijazi K, 2014, 'Characterisation of Drug Transporter Gene Expression in Colorectal Tissue and Cell Lines: Induction with Anti-retrovirals for Microbicide Optimization', in AIDS RESEARCH AND HUMAN RETROVIRUSES, MARY ANN LIEBERT, INC, SOUTH AFRICA, Cape Town, pp. A201 - A201, presented at Symposium on HIV Research for Prevention (HIV R4P), SOUTH AFRICA, Cape Town, 28 October 2014 - 31 October 2014, http://dx.doi.org/10.1089/aid.2014.5433.abstract

Smith KA; Mukhopadhya I; Berry S; Hold GL; Hijazi K, 2014, 'Expression of Drug Transporters in Cervicovaginal Cell Lines and Modulatory Effect of Candidate Antiretroviral Microbicides', in AIDS RESEARCH AND HUMAN RETROVIRUSES, MARY ANN LIEBERT, INC, SOUTH AFRICA, Cape Town, pp. A201 - A201, presented at Symposium on HIV Research for Prevention (HIV R4P), SOUTH AFRICA, Cape Town, 28 October 2014 - 31 October 2014, http://dx.doi.org/10.1089/aid.2014.5434.abstract


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