Select Publications
Journal articles
2014, 'Identification of differentiation-stage specific markers that define the ex vivo osteoblastic phenotype', Bone, 67, pp. 23 - 32, http://dx.doi.org/10.1016/j.bone.2014.06.027
,2014, 'RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium', Marine Genomics, 16, pp. 45 - 53, http://dx.doi.org/10.1016/j.margen.2013.12.004
,2014, 'Sphingosine kinase 1 Isoform-Specific interactions in breast cancer', Molecular Endocrinology, 28, pp. 1899 - 1915, http://dx.doi.org/10.1210/me.2013-1423
,2014, '454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: Transcriptome assembly and toxicant induced changes', Aquatic Toxicology, http://dx.doi.org/10.1016/j.aquatox.2013.11.022
,2014, '454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: Transcriptome assembly and toxicant induced changes', Aquatic Toxicology, 153, pp. 73 - 88, http://dx.doi.org/10.1016/j.aquatox.2013.11.022
,2014, 'RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium', Marine Genomics, http://dx.doi.org/10.1016/j.margen.2013.12.004
,2013, 'Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations', Proteomics, 13, pp. 3393 - 3405, http://dx.doi.org/10.1002/pmic.201200570
,2013, 'VAN: An R package for identifying biologically perturbed networks via differential variability analysis', BMC Research Notes, 6, http://dx.doi.org/10.1186/1756-0500-6-430
,2013, 'Analysis of the proteome of Saccharomyces cerevisiae for methylarginine', Journal of Proteome Research, 12, pp. 3884 - 3899, http://dx.doi.org/10.1021/pr400556c
,2013, 'Genome Sequence of Dehalobacter UNSWDHB, a Chloroform-Dechlorinating Bacterium', GENOME ANNOUNCEMENTS, 1, http://dx.doi.org/10.1128/genomeA.00720-13
,2013, 'Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association', BMC Genomics, 14, http://dx.doi.org/10.1186/1471-2164-14-585
,2013, 'Interactions affected by arginine methylation in the yeast protein-protein interaction network', Molecular & Cellular Proteomics, http://dx.doi.org/10.1074/mcp.M113.031500
,2013, 'Generation of Mice Deficient in both KLF3/BKLF and KLF8 Reveals a Genetic Interaction and a Role for These Factors in Embryonic Globin Gene Silencing', Molecular and Cellular Biology, 33, pp. 2976 - 2987, http://dx.doi.org/10.1128/MCB.00074-13
,2013, 'Draft Genome Sequences of Two Clinical Isolates of Lactobacillus rhamnosus from Initial Stages of Dental Pulp Infection', Genome Announcements, 1, http://dx.doi.org/10.1128/genomeA.00073-12
,2013, 'Genome sequence of Campylobacter showae UNSWCD, isolated from a patient with Crohn's disease', Genome Announcements, 1, http://dx.doi.org/10.1128/genomeA.00193-12
,2013, 'Genome sequence of Dehalobacter UNSWDHB, a chloroform-dechlorinating bacterium', Genome Announcements, 1, http://dx.doi.org/10.1128/genomeA.e00720-13
,2013, 'A conditional two-hybrid (C2H) system for the detection of protein-protein interactions that are mediated by post-translational modification', Proteomics, 13, pp. 1059 - 1064, http://dx.doi.org/10.1002/pmic.201200477
,2013, 'Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden', Pigment Cell & Melanoma Research, 26, pp. 708 - 722, http://onlinelibrary.wiley.com/doi/10.1111/pcmr.12126/abstract
,2013, 'Sequencing of hippocampal and cerebellar transcriptomes provides new insights into the complexity of gene regulation in the human brain.', Neuroscience Letters, 541, pp. 263 - 268, http://dx.doi.org/10.1016/j.neulet.2013.02.034
,2012, 'A multidimensional matrix for systems biology research and its application to interaction networks.', Journal of Proteome Research, 11, pp. 5204 - 5220, http://dx.doi.org/10.1021/pr300405y
,2012, 'Children with islet autoimmunity and enterovirus infection demonstrate a distinct cytokine profile', Diabetes, 61, pp. 1500 - 1508, http://dx.doi.org/10.2337/db11-0264
,2012, 'Cytomegalovirus infection during pregnancy with maternofetal transmission induces a proinflammatory cytokine bias in placenta and amniotic fluid', Journal of Infectious Diseases, 205, pp. 1305 - 1310, http://dx.doi.org/10.1093/infdis/jis186
,2012, 'Dynamic hubs show competitive and static hubs non-competitive regulation of their interaction partners.', PLoS One, 7, pp. e48209, http://dx.doi.org/10.1371/journal.pone.0048209
,2012, 'Enhanced methylarginine characterization by post-translational modification-specific targeted data acquisition and electron-transfer dissociation mass spectrometry', Journal of the American Society for Mass Spectrometry, 23, pp. 1376 - 1389, http://dx.doi.org/10.1007/s13361-012-0417-8
,2012, 'Methylation of translation-associated proteins in Saccharomyces cerevisiae: Identification of methylated lysines and their methyltransferases', Proteomics, 12, pp. 960 - 972, http://dx.doi.org/10.1002/pmic.201100570
,2012, 'Protein arginine methylation in Saccharomyces cerevisiae', FEBS Journal, 279, pp. 4423 - 4443, http://dx.doi.org/10.1111/febs.12039
,2012, 'The CACCC-binding protein KLF3/BKLF represses a subset of KLF1/EKLF target genes and is required for proper erythroid maturation in vivo', Molecular and Cellular Biology, 32, pp. 3281 - 3292
,2012, 'The methylproteome and the intracellular methylation network.', Proteomics, 12, pp. 564 - 586, http://dx.doi.org/10.1002/pmic.201100397
,2012, 'The role of mesenchymal stem cells in veterinary therapeutics - A Review', New Zealand Veterinary Journal, 60, pp. 265 - 272, http://dx.doi.org/10.1080/00480169.2012.683377
,2012, 'Time-course proteome analysis reveals the dynamic response of cryptococcus gattii cells to fluconazole', PLoS One, 7, pp. August - Article numbere42835, http://dx.doi.org/10.1371/journal.pone.0042835
,2012, 'Visualization of the interactome: what are we looking at?', Proteomics, 12, pp. 1669 - 1686, http://dx.doi.org/10.1002/pmic.201100454
,2011, 'Comparative analyses of Campylobacter concisusstrains reveal the genome of the reference strain BAA-1457 is not representative of the species.', Gut Pathogens, 3, pp. 15, http://dx.doi.org/10.1186/1757-4749-3-15
,2011, 'Four-dimensional visualisation and analysis of protein-protein interaction networks', Proteomics, 11, pp. 2672 - 2682
,2011, 'Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome', Electrophoresis, 32, pp. 1819 - 1823, http://dx.doi.org/10.1002/elps.201100122
,2011, 'Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity', PLoS ONE, 6, pp. e22170, http://dx.doi.org/10.1371/journal.pone/0022170
,2011, 'The pathogenic potential of campylobacter concisus strains associated with chronic intestinal diseases', PLoS One, 6, pp. e29045, http://dx.doi.org/10.1371
,2011, 'UniCarbKB: putting the pieces together for glycomics research.', Proteomics, 11, pp. 4117 - 4121, http://dx.doi.org/10.1002
,2011, 'Visualization and analysis of the complexome network of Saccharomyces cerevisiae', Journal of Proteome Research, 10, pp. 4744 - 4756, http://dx.doi.org/10.1021/pr200548c
,2011, 'Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease', PLoS One, 6, pp. e16266, http://dx.doi.org/10.1371/journal.pone.0016266
,2010, 'Analysis of the RNA degradosome complex in Vibrio angustum S14', FEBS Journal, 277, pp. 5161 - 5173, http://dx.doi.org/10.1111/j.1742-4658.2010.07934.x
,2010, 'GlycoViewer: a tool for visual summary and comparative analysis of the glycome.', Nucleic Acids Research, 38, pp. 667 - 670
,2010, 'Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications', BMC Genomics, 11, pp. 92
,2010, 'Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance.', Journal of Proteome Research, 9, pp. 1218 - 1225
,2010, 'Response of Helicobacter hepaticus to bovine bile', Journal of Proteome Research, 9, pp. 1374 - 1384
,2010, 'The secretome of Campylobacter concisus.', FEBS Journal, 277, pp. 1606 - 1617
,2010, 'Using the clustered circular layout as an informative method for visualizing protein-protein interaction networks.', Proteomics, 10, pp. 2327 - 2723, http://dx.doi.org/10.1002/pmic.201000046
,2009, 'A celebration of protein-protein interactions', Proteomics, 9, pp. 5207 - 5208, http://dx.doi.org/10.1002/pmic.200990092
,2009, 'Hares and tortoises: The high- versus low-throughput proteomic race', Electrophoresis, 30, pp. S150 - S155, http://dx.doi.org/10.1002/elps.200900175
,2009, 'Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1794, pp. 1107 - 1114
,2009, 'Inter-individual variation in expression: a missing link in biomarker biology?', Trends in Biotechnology, 27, pp. 5 - 10
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