By Professor Marc Wilkins

Journal articles

Huang K; Filarsky M; Padula M; Raftery MJ; Herbert B; Wilkins MR, 2009, 'Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis', Proteomics, 9, pp. 2494 - 2502

Wilkins MR, 2009, 'Proteomic data mining', Expert Review of Proteomics, 6, pp. 599 - 603

Widjaja YY; Pang CN; Wilkins MR; Lambert TD; Li SS, 2009, 'The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell.', Proteomics, 9, pp. 5309 - 5315

Pang CN; Krycer JR; Lek A; Wilkins MR, 2008, 'Are protein complexes made of cores, modules and attachments?', Proteomics, 8, pp. 425 - 434, http://dx.doi.org/10.1002/pmic.200700801

Krycer JR; Pang CN; Wilkins MR; Pang I, 2008, 'High throughput protein-protein interaction data: clues for the architecture of protein complexes', Proteome Science, 6, pp. 32 - 32, http://dx.doi.org/10.1186/1477-5956-6-32

Couttas TA; Raftery MJ; Bernardini G; Wilkins MR, 2008, 'Immonium ion scanning for the discovery of post-translational modifications and its application to histones', Journal of Proteome Research, 7, pp. 2632 - 2641

Wilkins MR; Arthur J; Junius F; Harrison M; Traini M; Bizannes P; Doggett P; McDonald W, 2008, 'Information management for proteomics: a perspective', Expert Review of Proteomics, 5, pp. 663 - 678

Ho E; Webber R; Wilkins MR, 2008, 'Interactive three-dimensional visualization and contextual analysis of protein interaction networks', Journal of Proteome Research, 7, pp. 104 - 112, http://dx.doi.org/10.1021/pr070274m

Deshpande N; Wilkins MR; Packer N; Nevalainen H, 2008, 'Protein glycosylation pathways in filamentous fungi', Glycobiology, 18, pp. 626 - 637

Wilkins MR; Kummerfeld SK, 2008, 'Sticking together? Falling apart? Exploring the dynamics of the interactome', Trends in Biochemical Sciences, 33, pp. 195 - 200, http://dx.doi.org/10.1016/j.tibs.2008.03.001

Okoli AS; Wilkins MR; Raftery M; Mendz GL, 2007, 'Comparative proteomics study of effects of Helicobacter bilis on Huh7, Huh7 NNeo3-5B(RG), and cured-Huh7 NNeo3-SB(RG) cell lines', Helicobacter, 12, pp. 382 - 383

Wilkins MR, 2007, 'Lower-order versus higher-order proteomics: Time to move up?', Journal of Proteome Research, 6, pp. 2403

Hsu W; Pang CN; Sheetal J; Wilkins MR, 2007, 'Protein-protein interactions and disease: Use of S-cerevisiae as a model system', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1774, pp. 838 - 847

Pang CN; Hayen A; Wilkins MR, 2007, 'Surface accessibility of protein post-translational modifications', Journal of Proteome Research, 6, pp. 1833 - 1845

Taylor C; Paton N; Lilley K; Binz P; Julian R; Jones AR; Zhu W; Apweiler R; Aebersold R; Deutsch E; Dunn MJ; Heck A; Leitner A; Macht M; Mann M; Martens L; Neubert T; Patterson S; Ping P; Seymour S; Souda P; Tsugita A; Vandekerckhove J; Vondriska T; Whitelegge J; Wilkins MR; Xenarios I; Yates J; Hermjakob H, 2007, 'The minimum information about a proteomics experiment (MIAPE)', Nature Biotechnology, 25, pp. 887 - 893

Ho E; Hayen A; Wilkins MR, 2006, 'Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis', Proteomics, 6, pp. 5746 - 5757

Wilkins MR; Appel R; Van Eyk J; Chung M; Gorg A; Hecker M; Huber L; Langen H; Link A; Paik Y; Patterson S; Pennington S; Rabilloud T; Simpson RJ; Weiss WA; Dunn MJ, 2006, 'Guidelines for the next 10 years of proteomics', Proteomics, 6, pp. 4 - 8

Wilkins MR, 2006, 'How proteomics can assist in the detection and avoidance of adverse drug reactions', Transfusion Medicine and Hemotherapy, 33, pp. 97 - 105

Hunt S; Thomas MR; Sebastian LT; Pedersen SK; Harcourt RL; Sloane AJ; Wilkins MR, 2005, 'Optimal replication and the importance of experimental design for gel-based quantitative proteomics', Journal of Proteome Research, 4, pp. 663

Arthur J; Wilkins MR, 2004, 'Using proteomics to mine genome sequences', Journal of Proteome Research, 3, pp. 393 - 402

Breen EJ; Holstein WL; Hopwood FG; Smith PE; Thomas ML; Wilkins MR, 2003, 'Automated peak harvesting of MALDI-MS spectra for high throughput proteomics', Spectroscopy-An International Journal, 17, pp. 579 - 596

Cooper CA; Joshi HJ; Harrison M; Wilkins MR; Packer N, 2003, 'GlycosuiteDB : a curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 31, pp. 511 - 513

Van Dyk DD; Misztal DD; Wilkins MR; Poljak A; Mackintosh JA; Varnai JC; Teber E; Walsh B; Gray PP, 2003, 'Identification of cellular changes associated with increased production of human growth hormone in a recombinant Chinese hamster ovary cell line.', Proteomics, 3, pp. 147 - 156

Pedersen SK; Harry JL; Sebastian LT; Baker J; Traini M; McCarthy JT; Manoharan A; Wilkins MR; Gooley AA; Righetti PG; Packer N; Williams KL; Herbert B, 2003, 'Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins', Journal of Proteome Research, 2, pp. 303 - 311, http://dx.doi.org/10.1021/pr025588i

Cooper CA; Harrison MJ; Webster JM; Wilkins MR; Packer NH, 2002, 'Data standardisation in GlycoSuiteDB.', Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 297 - 309

Cooper CA; Harrison MJ; Wilkins MR; Packer NH, 2001, 'GlycoSuiteDB: A new curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 29, pp. 332 - 335, http://dx.doi.org/10.1093/nar/29.1.332

Lisacek FC; Traini MD; Sexton D; Harry JL; Wilkins MR, 2001, 'Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting', Proteomics, 1, pp. 186 - 193, http://dx.doi.org/10.1002/1615-9861(200102)1:2<186::AID-PROT186>3.0.CO;2-G

Emslie KR; Molloy MP; Barardi CRM; Jardine D; Wilkins MR; Bellamy AR; Williams KL, 2000, 'Serotype classification and characterisation of the rotavirus SA11 VP6 protein using mass spectrometry and two-dimensional gel electrophoresis', Functional and Integrative Genomics, 1, pp. 12 - 24, http://dx.doi.org/10.1007/s101420000002

Breen EJ; Hopwood FG; Williams KL; Wilkins MR, 2000, 'Automatic Poisson peak harvesting for high throughput protein identification', Electrophoresis, 21, pp. 2243 - 2251, http://dx.doi.org/10.1002/1522-2683(20000601)21:11<2243::AID-ELPS2243>3.0.CO;2-K

Kojima T; Andersen E; Sanchez JC; Wilkins MR; Hochstrasser DF; Pralong WF; Cimasoni G, 2000, 'Human gingival crevicular fluid contains mrp8 (s100a8) and mrp 14 (s100a9), two calcium-binding proteins of the s100 family', Journal of Dental Research, 79, pp. 740 - 747, http://dx.doi.org/10.1177/00220345000790020701

Wilkins M, 2000, 'Proteomic paradigms for perceiving purpose', Trends in Biotechnology, 18, pp. 91 - 92, http://dx.doi.org/10.1016/S0167-7799(99)01403-1

Harry JL; Wilkins MR; Herbert BR; Packer NH; Gooley AA; Williams KL, 2000, 'Proteomics: Capacity versus utility', Electrophoresis, 21, pp. 1071 - 1081, http://dx.doi.org/10.1002/(SICI)1522-2683(20000401)21:6<1071::AID-ELPS1071>3.0.CO;2-M

Ou K; Wilkins MR; Gooley AA; Tonella L; Sanchez JC; Tyler M; Walsh BJ; Pasquali C; Hochstrasser DF; Williams KL, 1999, 'Rapid identification and quantitation of Escherichia coli proteins separated by 2-D electrophoresis', American Biotechnology Laboratory, 17, pp. 16 - 20

Binz PA; Muller M; Walther D; Bienvenut WV; Gras R; Hoogland C; Bouchet G; Gasteiger E; Fabbretti R; Gay S; Palagi P; Wilkins MR; Rouge V; Tonella L; Paesano S; Rossellat G; Karmime A; Bairoch A; Sanchez JC; Appel RD; Hochstrasser DF, 1999, 'A molecular scanner to automate proteomic research and to display proteome images', Analytical Chemistry, 71, pp. 4981 - 4988, http://dx.doi.org/10.1021/ac990449e

Wilkins MR; Gasteiger E; Gooley AA; Herbert BR; Molloy MP; Binz PA; Ou K; Sanchez JC; Bairoch A; Williams KL; Hochstrasser DF, 1999, 'High-throughput mass spectrometric discovery of protein post-translational modifications', Journal of Molecular Biology, 289, pp. 645 - 657, http://dx.doi.org/10.1006/jmbi.1999.2794

Wilkins MR; Yan JX; Gooley AA, 1999, '2-DE spot amino acid analysis with 9-fluorenylmethyl chloroformate.', Methods in molecular biology (Clifton, N.J.), 112, pp. 445 - 460

Cooper CA; Wilkins MR; Williams KL; Packer NH, 1999, 'BOLD - A biological O-linked glycan database', Electrophoresis, 20, pp. 3589 - 3598, http://dx.doi.org/10.1002/(SICI)1522-2683(19991201)20:18<3589::AID-ELPS3589>3.0.CO;2-M

Wilkins MR; Gasteiger E; Bairoch A; Sanchez JC; Williams KL; Appel RD; Hochstrasser DF, 1999, 'Protein identification and analysis tools in the ExPASy server.', Methods in molecular biology (Clifton, N.J.), 112, pp. 531 - 552

Wilkins MR; Gasteiger E; Tonella L; Ou K; Tyler M; Sanchez JC; Gooley AA; Walsh BJ; Bairoch A; Appel RD; Williams KL; Hochstrasser DF, 1998, 'Protein identification with N and C-terminal sequence tags in proteome projects', Journal of Molecular Biology, 278, pp. 599 - 608, http://dx.doi.org/10.1006/jmbi.1998.1726

Tonella L; Walsh BJ; Sanchez JC; Ou K; Wilkins MR; Tyler M; Frutiger S; Gooley AA; Pescaru I; Appel RD; Yan JX; Bairoch A; Hoogland C; Morch FS; Hughes GJ; Williams KL; Hochstrasser DF, 1998, ''98 Escherichia coli SWISS-2DPAGE database update', Electrophoresis, 19, pp. 1960 - 1971, http://dx.doi.org/10.1002/elps.1150191114

Wilkins MR; Gasteiger E; Wheeler CH; Lindskog I; Sanchez JC; Bairoch A; Appel RD; Dunn MJ; Hochstrasser DF, 1998, 'Multiple parameter cross-species protein identification using MultiIdent - A world-wide web accessible tool', Electrophoresis, 19, pp. 3199 - 3206, http://dx.doi.org/10.1002/elps.1150191824

Traini M; Gooley AA; Ou K; Wilkins MR; Tonella L; Sanchez JC; Hochstrasser DF; Williams KL, 1998, 'Towards an automated approach for protein identification in proteome projects', Electrophoresis, 19, pp. 1941 - 1949, http://dx.doi.org/10.1002/elps.1150191112

Wilkins MR; Gasteiger E; Sanchez JC; Bairoch A; Hochstrasser DF, 1998, 'Two-dimensional gel electrophoresis for proteome projects: The effects of protein hydrophobicity and copy number', Electrophoresis, 19, pp. 1501 - 1505, http://dx.doi.org/10.1002/elps.1150190847

Hochstrasser DF; Frutiger S; Wilkins MR; Hughes G; Sanchez JC, 1997, 'Elevation of apolipoprotein E in the CSF of cattle affected by BSE', FEBS Letters, 416, pp. 161 - 163, http://dx.doi.org/10.1016/S0014-5793(97)01191-5

Wilkins MR; Williams KL, 1997, 'Cross-species protein identification using amino acid composition, peptide mass fingerprinting, isoelectric point and molecular mass: A theoretical evaluation', Journal of Theoretical Biology, 186, pp. 7 - 15, http://dx.doi.org/10.1006/jtbi.1996.0346

Yan JX; Packer NH; Tonella L; Ou K; Wilkins MR; Sanchez JC; Gooley AA; Hochstrasser DF; Williams KL, 1997, 'High sample throughput phosphoamino acid analysis of proteins separated by one- and two-dimensional gel electrophoresis', Journal of Chromatography A, 764, pp. 201 - 210, http://dx.doi.org/10.1016/S0021-9673(96)00931-4

Gooley AA; Ou K; Russell J; Wilkins MR; Sanchez JC; Hochstrasser DF; Williams KL, 1997, 'A role for Edman degradation in proteome studies', Electrophoresis, 18, pp. 1068 - 1072, http://dx.doi.org/10.1002/elps.1150180707

Liberatori S; Bini L; De Felice C; Magi B; Marzocchi B; Raggiaschi R; Frutiger S; Sanchez JC; Wilkins MR; Hughes G; Hochstrasser DF; Bracci R; Pallini V, 1997, 'A two-dimensional protein map of human amniotic fluid at 17 weeks' gestation', Electrophoresis, 18, pp. 2816 - 2822, http://dx.doi.org/10.1002/elps.1150181517

Wilkins MR; Lindskog I; Gasteiger E; Bairoch A; Sanchez JC; Hochstrasser DF; Appel RD, 1997, 'Detailed peptide characterization using PEPTIDEMASS - A World-Wide-Web-accessible tool', Electrophoresis, 18, pp. 403 - 408, http://dx.doi.org/10.1002/elps.1150180314

Sanchez JC; Rouge V; Pisteur M; Ravier F; Tonella L; Moosmayer M; Wilkins MR; Hochstrasser DF, 1997, 'Improved and simplified in-gel sample application using reswelling of dry immobilized pH gradients', Electrophoresis, 18, pp. 324 - 327, http://dx.doi.org/10.1002/elps.1150180305

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