By Professor Marc Wilkins

Journal articles

Hargett S; Lahiri S; Kowalski GM; Corley S; Nelson ME; Lackner C; Olzomer EM; Aleksovska I; Hearn BA; Shrestha R; Janitz M; Gorrell MD; Bruce CR; Wilkins M; Hoehn KL; Byrne FL, 2024, 'Bile acids mediate fructose-associated liver tumour growth in mice', Biochimica et Biophysica Acta - Molecular Basis of Disease, 1870, http://dx.doi.org/10.1016/j.bbadis.2024.167029

Karakatsanis NM; Hamey JJ; Wilkins MR, 2024, 'Taking Me away: the function of phosphorylation on histone lysine demethylases', Trends in Biochemical Sciences, 49, pp. 257 - 276, http://dx.doi.org/10.1016/j.tibs.2023.12.004

Manandhar B; Pandzic E; Deshpande N; Chen SY; Wasinger VC; Kockx M; Glaros EN; Ong KL; Thomas SR; Wilkins MR; Whan RM; Cochran BJ; Rye KA, 2024, 'ApoA-I Protects Pancreatic β-Cells from Cholesterol-Induced Mitochondrial Damage and Restores Their Ability to Secrete Insulin', Arteriosclerosis, Thrombosis, and Vascular Biology, 44, pp. E20 - E38, http://dx.doi.org/10.1161/ATVBAHA.123.319378

Kopecky C; Haug M; Reischl B; Deshpande N; Manandhar B; King TW; Lee V; Wilkins MR; Morris M; Polly P; Friedrich O; Rye KA; Cochran BJ, 2024, 'Effect of insulin insufficiency on ultrastructure and function in skeletal muscle', Journal of Cachexia, Sarcopenia and Muscle, 15, pp. 112 - 123, http://dx.doi.org/10.1002/jcsm.13380

Hamey JJ; Nguyen A; Haddad M; Vázquez-Campos X; Pfeiffer PG; Wilkins MR, 2024, 'Methylation of elongation factor 1A by yeast Efm4 or human eEF1A-KMT2 involves a beta-hairpin recognition motif and crosstalks with phosphorylation', Journal of Biological Chemistry, 300, http://dx.doi.org/10.1016/j.jbc.2024.105639

Separovich RJ; Karakatsanis NM; Gao K; Fuh D; Hamey JJ; Wilkins MR, 2024, 'Proline-directed yeast and human MAP kinases phosphorylate the Dot1p/DOT1L histone H3K79 methyltransferase', FEBS Journal, http://dx.doi.org/10.1111/febs.17062

Li Y; Wu B; Hossain MJ; Quagliata L; O’Meara C; Wilkins MR; Corley S; Khachigian LM, 2023, 'Flubendazole inhibits PD-1 and suppresses melanoma growth in immunocompetent mice', Journal of Translational Medicine, 21, http://dx.doi.org/10.1186/s12967-023-04289-y

Mu A; Klare WP; Baines SL; Ignatius Pang CN; Guérillot R; Harbison-Price N; Keller N; Wilksch J; Nhu NTK; Phan MD; Keller B; Nijagal B; Tull D; Dayalan S; Chua HHC; Skoneczny D; Koval J; Hachani A; Shah AD; Neha N; Jadhav S; Partridge SR; Cork AJ; Peters K; Bertolla O; Brouwer S; Hancock SJ; Álvarez-Fraga L; De Oliveira DMP; Forde B; Dale A; Mujchariyakul W; Walsh CJ; Monk I; Fitzgerald A; Lum M; Correa-Ospina C; Roy Chowdhury P; Parton RG; De Voss J; Beckett J; Monty F; McKinnon J; Song X; Stephen JR; Everest M; Bellgard MI; Tinning M; Leeming M; Hocking D; Jebeli L; Wang N; Ben Zakour N; Yasar SA; Vecchiarelli S; Russell T; Zaw T; Chen T; Teng D; Kassir Z; Lithgow T; Jenney A; Cole JN; Nizet V; Sorrell TC; Peleg AY; Paterson DL; Beatson SA; Wu J; Molloy MP; Syme AE; Goode RJA; Hunter AA; Bowland G; West NP; Wilkins MR; Djordjevic SP; Davies MR; Seemann T; Howden BP; Pascovici D; Tyagi S; Schittenhelm RB; De Souza DP; McConville MJ; Iredell JR; Cordwell SJ; Strugnell RA; Stinear TP; Schembri MA; Walker MJ; Pang I, 2023, 'Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria', Nature Communications, 14, pp. 1530, http://dx.doi.org/10.1038/s41467-023-37200-w

Hamey JJ; Wilkins MR, 2023, 'The protein methylation network in yeast: A landmark in completeness for a eukaryotic post-translational modification', Proceedings of the National Academy of Sciences of the United States of America, 120, http://dx.doi.org/10.1073/pnas.2215431120

Bartolec TK; Vázquez-Campos X; Norman A; Luong C; Johnson M; Payne RJ; Wilkins MR; Mackay JP; Low JKK; Vazquez Campos X, 2023, 'Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell', Proceedings of the National Academy of Sciences of the United States of America, 120, http://dx.doi.org/10.1073/pnas.2219418120

Kronen M; Vázquez-Campos X; Wilkins MR; Lee M; Manefield MJ; Vazquez Campos X, 2023, 'Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae', mSystems, 8, pp. e00119 - e00123, http://dx.doi.org/10.1128/msystems.00119-23

Kinsela AS; Payne TE; Bligh MW; Vázquez-Campos X; Wilkins MR; Comarmond MJ; Rowling B; Waite TD, 2022, 'Contaminant release, mixing and microbial fluctuations initiated by infiltrating water within a replica field-scale legacy radioactive waste trench', Science of the Total Environment, 851, http://dx.doi.org/10.1016/j.scitotenv.2022.158241

Bell KJ; Saad S; Tillett BJ; McGuire HM; Bordbar S; Yap YA; Nguyen LT; Wilkins MR; Corley S; Brodie S; Duong S; Wright CJ; Twigg S; de St Groth BF; Harrison LC; Mackay CR; Gurzov EN; Hamilton-Williams EE; Mariño E, 2022, 'Metabolite-based dietary supplementation in human type 1 diabetes is associated with microbiota and immune modulation', Microbiome, 10, http://dx.doi.org/10.1186/s40168-021-01193-9

Mediati DG; Wong JL; Gao W; McKellar S; Pang CNI; Wu S; Wu W; Sy B; Monk IR; Biazik JM; Wilkins MR; Howden BP; Stinear TP; Granneman S; Tree JJ, 2022, 'Publisher Correction: RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance (Nature Communications, (2022), 13, 1, (3558), 10.1038/s41467-022-31177-8)', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-33167-2

Mediati DG; Wong JL; Gao W; McKellar S; Pang CNI; Wu S; Wu W; Sy B; Monk IR; Biazik JM; Wilkins MR; Howden BP; Stinear TP; Granneman S; Tree JJ, 2022, 'RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3′UTR required for intermediate vancomycin resistance', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-31177-8

Bartolec TK; Hamey JJ; Keller A; Chavez JD; Bruce JE; Wilkins MR, 2022, 'Differential Proteome and Interactome Analysis Reveal the Basis of Pleiotropy Associated With the Histidine Methyltransferase Hpm1p', Molecular and Cellular Proteomics, 21, http://dx.doi.org/10.1016/j.mcpro.2022.100249

Tay AP; Hamey JJ; Martyn GE; Wilson LOW; Wilkins MR, 2022, 'Identification of Protein Isoforms Using Reference Databases Built from Long and Short Read RNA-Sequencing', Journal of Proteome Research, 21, pp. 1628 - 1639, http://dx.doi.org/10.1021/acs.jproteome.1c00968

Separovich RJ; Wong MWM; Bartolec TK; Hamey JJ; Wilkins MR, 2022, 'Site-specific Phosphorylation of Histone H3K36 Methyltransferase Set2p and Demethylase Jhd1p is Required for Stress Responses in Saccharomyces cerevisiae', Journal of Molecular Biology, 434, pp. 167500, http://dx.doi.org/10.1016/j.jmb.2022.167500

Deshpande N; Wilkins MR; Khachigian LM, 2022, 'RNA sequencing identifies genes reliant upon Ser26 in the zinc finger transcription factor, early growth response-1', Vascular Pharmacology, 143, http://dx.doi.org/10.1016/j.vph.2022.106952

You J; Corley SM; Wen L; Hodge C; Höllhumer R; Madigan MC; Wilkins MR; Sutton G, 2021, 'Author Correction: RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients (Scientific Reports, (2018), 8, 1, (389), 10.1038/s41598-017-18480-x)', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-021-98363-4

Deshpande NP; Riordan SM; Gorman CJ; Nielsen S; Russell TL; Correa-Ospina C; Fernando BSM; Waters SA; Castaño-Rodríguez N; Man SM; Tedla N; Wilkins MR; Kaakoush NO, 2021, 'Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus', Genome Medicine, 13, pp. 133, http://dx.doi.org/10.1186/s13073-021-00951-6

Khan MAM; Deshpande NP; Shuttleworth LA; Osborne T; Collins D; Wilkins MR; Gurr GM; Reynolds OL, 2021, 'Raspberry ketone diet supplement reduces attraction of sterile male Queensland fruit fly to cuelure by altering expression of chemoreceptor genes', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-021-96778-7

Kim KW; Deveson IW; Pang CNI; Yeang M; Naing Z; Adikari T; Hammond JM; Stevanovski I; Beukers AG; Verich A; Yin S; McFarlane D; Wilkins MR; Stelzer-Braid S; Bull RA; Craig ME; van Hal SJ; Rawlinson WD, 2021, 'Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing', Scientific Reports, 11, pp. 3934, http://dx.doi.org/10.1038/s41598-021-83642-x

Bӧhm JW; Sia KCS; Jones C; Evans K; Mariana A; Pang I; Failes T; Zhong L; Mayoh C; Landman R; Collins R; Erickson SW; Arndt G; Raftery MJ; Wilkins MR; Norris MD; Haber M; Marshall GM; Lock RB, 2021, 'Combination efficacy of ruxolitinib with standard-of-care drugs in CRLF2-rearranged Ph-like acute lymphoblastic leukemia', Leukemia, 35, pp. 3101 - 3112, http://dx.doi.org/10.1038/s41375-021-01248-8

Lorenzi L; Chiu HS; Avila Cobos F; Gross S; Volders PJ; Cannoodt R; Nuytens J; Vanderheyden K; Anckaert J; Lefever S; Tay AP; de Bony EJ; Trypsteen W; Gysens F; Vromman M; Goovaerts T; Hansen TB; Kuersten S; Nijs N; Taghon T; Vermaelen K; Bracke KR; Saeys Y; De Meyer T; Deshpande NP; Anande G; Chen TW; Wilkins MR; Unnikrishnan A; De Preter K; Kjems J; Koster J; Schroth GP; Vandesompele J; Sumazin P; Mestdagh P, 2021, 'Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs (Nature Biotechnology, (2021), 39, 11, (1453-1465), 10.1038/s41587-021-00936-1)', Nature Biotechnology, 39, pp. 1467, http://dx.doi.org/10.1038/s41587-021-00996-3

Lorenzi L; Chiu HS; Avila Cobos F; Gross S; Volders PJ; Cannoodt R; Nuytens J; Vanderheyden K; Anckaert J; Lefever S; Tay AP; de Bony EJ; Trypsteen W; Gysens F; Vromman M; Goovaerts T; Hansen TB; Kuersten S; Nijs N; Taghon T; Vermaelen K; Bracke KR; Saeys Y; De Meyer T; Deshpande NP; Anande G; Chen TW; Wilkins MR; Unnikrishnan A; De Preter K; Kjems J; Koster J; Schroth GP; Vandesompele J; Sumazin P; Mestdagh P, 2021, 'The RNA Atlas expands the catalog of human non-coding RNAs', Nature Biotechnology, 39, pp. 1453 - 1465, http://dx.doi.org/10.1038/s41587-021-00936-1

Vazquez Campos X; Kinsela A; Bligh M; Payne TE; Wilkins M; Waite D, 2021, 'Genomic Insights Into the Archaea Inhabiting an Australian Radioactive Legacy Site', Frontiers in Microbiology, 12, pp. 732575 - 732575, http://dx.doi.org/10.3389/fmicb.2021.732575

Hamey JJ; Rakow S; Bouchard C; Senst JM; Kolb P; Bauer UM; Wilkins MR; Hart-Smith G, 2021, 'Systematic investigation of PRMT6 substrate recognition reveals broad specificity with a preference for an RG motif or basic and bulky residues', FEBS Journal, 288, pp. 5668 - 5691, http://dx.doi.org/10.1111/febs.15837

Manandhar B; Pandzic E; Deshpande N; Chen S-Y; Wasinger VC; Kockx M; Glaros E; Ong KL; Thomas S; Wilkins M; Whan R; Cochran BJ; Rye KA, 2021, 'The Anti-Oxidant Function Of Apolipoprotein A-I Rescues Pancreatic beta-Cells From Cholesterol-Induced Mitochondrial Dysfunction', ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 41, http://dx.doi.org/10.1161/atvb.41.suppl_1.122

Separovich RJ; Wilkins MR, 2021, 'Ready, SET, Go: Post-translational regulation of the histone lysine methylation network in budding yeast', Journal of Biological Chemistry, 297, http://dx.doi.org/10.1016/j.jbc.2021.100939

Kinsela AS; Bligh MW; Vázquez-Campos X; Sun Y; Wilkins MR; Comarmond MJ; Rowling B; Payne TE; Waite TD, 2021, 'Biogeochemical Mobility of Contaminants from a Replica Radioactive Waste Trench in Response to Rainfall-Induced Redox Oscillations', Environmental Science and Technology, 55, pp. 8793 - 8805, http://dx.doi.org/10.1021/acs.est.1c01604

Pang TCY; Xu Z; Mekapogu AR; Pothula S; Becker T; Corley S; Wilkins MR; Goldstein D; Pirola R; Wilson J; Apte M, 2021, 'Hgf/c-met inhibition as adjuvant therapy improves outcomes in an orthotopic mouse model of pancreatic cancer', Cancers, 13, pp. 2763, http://dx.doi.org/10.3390/cancers13112763

Zaman MS; Barman SK; Corley SM; Wilkins MR; Malladi CS; Wu MJ, 2021, 'Transcriptomic insights into the zinc homeostasis of MCF-7 breast cancer cells via next-generation RNA sequencing', Metallomics, 13, http://dx.doi.org/10.1093/mtomcs/mfab026

Hamey JJ; Nguyen A; Wilkins MR, 2021, 'Discovery of Arginine Methylation, Phosphorylation, and Their Co-occurrence in Condensate-Associated Proteins in Saccharomyces cerevisiae', Journal of Proteome Research, 20, pp. 2420 - 2434, http://dx.doi.org/10.1021/acs.jproteome.0c00927

Separovich RJ; Wong MWM; Chapman TR; Slavich E; Hamey JJ; Wilkins MR, 2021, 'Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential', Journal of Biological Chemistry, 296, http://dx.doi.org/10.1074/JBC.RA120.015995

Separovich RJ; Wong MWM; Chapman TR; Slavich E; Hamey JJ; Wilkins MR, 2020, 'Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential.', J Biol Chem, pp. 100192, http://dx.doi.org/10.1074/jbc.RA120.015995

Adhikari S; Nice EC; Deutsch EW; Lane L; Omenn GS; Pennington SR; Paik YK; Overall CM; Corrales FJ; Cristea IM; Van Eyk JE; Uhlén M; Lindskog C; Chan DW; Bairoch A; Waddington JC; Justice JL; LaBaer J; Rodriguez H; He F; Kostrzewa M; Ping P; Gundry RL; Stewart P; Srivastava S; Srivastava S; Nogueira FCS; Domont GB; Vandenbrouck Y; Lam MPY; Wennersten S; Vizcaino JA; Wilkins M; Schwenk JM; Lundberg E; Bandeira N; Marko-Varga G; Weintraub ST; Pineau C; Kusebauch U; Moritz RL; Ahn SB; Palmblad M; Snyder MP; Aebersold R; Baker MS, 2020, 'A high-stringency blueprint of the human proteome', Nature Communications, 11, http://dx.doi.org/10.1038/s41467-020-19045-9

Separovich RJ; Pang CNI; Wilkins MR, 2020, 'Controlling the Controllers: Regulation of Histone Methylation by Phosphosignalling', Trends in Biochemical Sciences, 45, pp. 1035 - 1048, http://dx.doi.org/10.1016/j.tibs.2020.08.004

Emery-Corbin SJ; Hamey JJ; Ansell BRE; Balan B; Tichkule S; Stroehlein AJ; Cooper C; McInerney BV; Hediyeh-Zadeh S; Vuong D; Crombie A; Lacey E; Davis MJ; Wilkins MR; Bahlo M; Svard SG; Gasser RB; Jex AR, 2020, 'Eukaryote-conserved methylarginine is absent in diplomonads and functionally compensated in Giardia', Molecular Biology and Evolution, 37, pp. 3525 - 3549, http://dx.doi.org/10.1093/molbev/msaa186

Yang L; Chen Z; Stout ES; Delerue F; Ittner LM; Wilkins MR; Quinlan KGR; Crossley M, 2020, 'Methylation of a CGATA element inhibits binding and regulation by GATA-1', Nature Communications, 11, http://dx.doi.org/10.1038/s41467-020-16388-1

Leitner A; Bonvin AMJJ; Borchers CH; Chalkley RJ; Chamot-Rooke J; Combe CW; Cox J; Dong MQ; Fischer L; Götze M; Gozzo FC; Heck AJR; Hoopmann MR; Huang L; Ishihama Y; Jones AR; Kalisman N; Kohlbacher O; Mechtler K; Moritz RL; Netz E; Novak P; Petrotchenko E; Sali A; Scheltema RA; Schmidt C; Schriemer D; Sinz A; Sobott F; Stengel F; Thalassinos K; Urlaub H; Viner R; Vizcaíno JA; Wilkins MR; Rappsilber J, 2020, 'Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry', Structure, 28, pp. 1259 - 1268, http://dx.doi.org/10.1016/j.str.2020.09.011

Pang CNI; Ballouz S; Weissberger D; Thibaut LM; Hamey JJ; Gillis J; Wilkins MR; Hart-Smith G, 2020, 'Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiae Protein Complexes', Molecular and Cellular Proteomics, 19, pp. 1876 - 1895, http://dx.doi.org/10.1074/mcp.RA120.002154

Nadkarni MA; Deshpande NP; Wilkins MR; Hunter N, 2020, 'Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: lessons from the oral cavity', BMC genomics, 21, pp. 661, http://dx.doi.org/10.1186/s12864-020-07062-3

Anande G; Deshpande NP; Mareschal S; Batcha AMN; Hampton HR; Herold T; Lehmann S; Wilkins MR; Wong JWH; Unnikrishnan A; Pimanda JE, 2020, 'RNA Splicing Alterations Induce a Cellular Stress Response Associated with Poor Prognosis in Acute Myeloid Leukemia', Clinical Cancer Research, 26, pp. 3597 - 3607, http://dx.doi.org/10.1158/1078-0432.CCR-20-0184

Kim KW; Allen DW; Briese T; Couper JJ; Barry SC; Colman PG; Cotterill AM; Davis EA; Giles LC; Harrison LC; Harris M; Haynes A; Horton JL; Isaacs SR; Jain K; Lipkin WI; McGorm K; Morahan G; Morbey C; Pang ICN; Papenfuss AT; Penno MAS; Sinnott RO; Soldatos G; Thomson RL; Vuillermin P; Wentworth JM; Wilkins MR; Rawlinson WD; Craig ME, 2020, 'Higher frequency of vertebrate-infecting viruses in the gut of infants born to mothers with type 1 diabetes', Pediatric Diabetes, 21, pp. 271 - 279, http://dx.doi.org/10.1111/pedi.12952

Bartolec TK; Smith DL; Pang CNI; Xu YD; Hamey JJ; Wilkins MR, 2020, 'Cross-linking Mass Spectrometry Analysis of the Yeast Nucleus Reveals Extensive Protein-Protein Interactions Not Detected by Systematic Two-Hybrid or Affinity Purification-Mass Spectrometry', Analytical Chemistry, 92, pp. 1874 - 1882, http://dx.doi.org/10.1021/acs.analchem.9b03975

Smith DL; Erce MA; Lai YW; Tomasetig F; Hart-Smith G; Hamey JJ; Wilkins MR, 2020, 'Crosstalk of Phosphorylation and Arginine Methylation in Disordered SRGG Repeats of Saccharomyces cerevisiae Fibrillarin and Its Association with Nucleolar Localization', Journal of Molecular Biology, 432, pp. 448 - 466, http://dx.doi.org/10.1016/j.jmb.2019.11.006

Bayat A; Deshpande NP; Wilkins MR; Parameswaran S, 2020, 'Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach', IEEE/ACM Transactions on Computational Biology and Bioinformatics, 17, pp. 334 - 338, http://dx.doi.org/10.1109/TCBB.2018.2875479

Kim KW; Deveson I; Pang CN; Yeang M; Naing Z; Adikari T; Hammond J; Stevanovski I; Beukers A; Verich A; Yin S; McFarlane D; Wilkins M; Stelzer-Braid S; Bull R; Craig M; Hal SV; Rawlinson W, 2020, 'Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing', , http://dx.doi.org/10.21203/rs.3.rs-105996/v1

Anande G; Deshpande N; Mareschal S; Batcha A; Hampton H; Herold T; Lehmann S; Wilkins M; Wong JWH; Unnikrishnan A; Pimanda J, 2020, 'RNA splicing alterations induce a cellular stress response associated with poor prognosis in AML', , http://dx.doi.org/10.1101/2020.01.10.895714

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