By Professor Marc Wilkins

Journal articles

Schramm S-J; Li SS; Jayaswal V; Fung D; Campain AE; Pang CNI; Scolyer RA; Yang YH; Mann GJ; Wilkins MR, 2013, 'Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden', Pigment Cell & Melanoma Research, 26, pp. 708 - 722, http://onlinelibrary.wiley.com/doi/10.1111/pcmr.12126/abstract

Twine NA; Janitz C; Wilkins MR; Janitz M, 2013, 'Sequencing of hippocampal and cerebellar transcriptomes provides new insights into the complexity of gene regulation in the human brain.', Neuroscience Letters, 541, pp. 263 - 268, http://dx.doi.org/10.1016/j.neulet.2013.02.034

Pang CNI; Goel A; Li SS; Wilkins MR, 2012, 'A multidimensional matrix for systems biology research and its application to interaction networks.', Journal of Proteome Research, 11, pp. 5204 - 5220, http://dx.doi.org/10.1021/pr300405y

Yeung WCG; Pang CNI; Wilkins MR; Catteau J; Howard N; Rawlinson WD; Craig ME; Al-Shabeeb A, 2012, 'Children with islet autoimmunity and enterovirus infection demonstrate a distinct cytokine profile', Diabetes, 61, pp. 1500 - 1508, http://dx.doi.org/10.2337/db11-0264

Scott GM; Chow SS; Craig ME; Pang CN; Hall B; Wilkins MR; Jones C; Lloyd AR; Rawlinson WD; hall B, 2012, 'Cytomegalovirus infection during pregnancy with maternofetal transmission induces a proinflammatory cytokine bias in placenta and amniotic fluid', Journal of Infectious Diseases, 205, pp. 1305 - 1310, http://dx.doi.org/10.1093/infdis/jis186

Goel A; Wilkins MR, 2012, 'Dynamic hubs show competitive and static hubs non-competitive regulation of their interaction partners.', PLoS One, 7, pp. e48209, http://dx.doi.org/10.1371/journal.pone.0048209

Hart-Smith GO; Low JKK; Erce MA; Wilkins MR, 2012, 'Enhanced methylarginine characterization by post-translational modification-specific targeted data acquisition and electron-transfer dissociation mass spectrometry', Journal of the American Society for Mass Spectrometry, 23, pp. 1376 - 1389, http://dx.doi.org/10.1007/s13361-012-0417-8

Couttas TA; Raftery MJ; Padula M; Herbert BR; Wilkins MR, 2012, 'Methylation of translation-associated proteins in Saccharomyces cerevisiae: Identification of methylated lysines and their methyltransferases', Proteomics, 12, pp. 960 - 972, http://dx.doi.org/10.1002/pmic.201100570

Low JKK; Wilkins MR, 2012, 'Protein arginine methylation in Saccharomyces cerevisiae', FEBS Journal, 279, pp. 4423 - 4443, http://dx.doi.org/10.1111/febs.12039

Funnell AP; Norton LJ; Mak KS; Burdach J; Artuz CM; Twine NA; Wilkins MR; Power C; Hung TT; Perdomo JS; Bell-Anderson K; Orkin SH; Pearson RC; Crossley M, 2012, 'The CACCC-binding protein KLF3/BKLF represses a subset of KLF1/EKLF target genes and is required for proper erythroid maturation in vivo', Molecular and Cellular Biology, 32, pp. 3281 - 3292, http://dx.doi.org/10.1128/MCB.00173-12

Erce MA; Pang CN; Hart-Smith GO; Wilkins MR, 2012, 'The methylproteome and the intracellular methylation network.', Proteomics, 12, pp. 564 - 586, http://dx.doi.org/10.1002/pmic.201100397

Webster R; Blaber SP; Herbert BR; Wilkins MR; Vesey G, 2012, 'The role of mesenchymal stem cells in veterinary therapeutics - A Review', New Zealand Veterinary Journal, 60, pp. 265 - 272, http://dx.doi.org/10.1080/00480169.2012.683377

Chong HS; Campbell LT; Padula MP; Hill CJ; Harry EJ; Li SS; Wilkins MR; Herbert BR; Carter DA, 2012, 'Time-course proteome analysis reveals the dynamic response of cryptococcus gattii cells to fluconazole', PLoS One, 7, pp. August - Article numbere42835, http://dx.doi.org/10.1371/journal.pone.0042835

Fung DCY; Li SS; Goel A; Hong S-H; Wilkins MR, 2012, 'Visualization of the interactome: what are we looking at?', Proteomics, 12, pp. 1669 - 1686, http://dx.doi.org/10.1002/pmic.201100454

Kaakoush NO; Deshpande N; Wilkins MR; Raftery MJ; Janitz K; Mitchell HM, 2011, 'Comparative analyses of Campylobacter concisusstrains reveal the genome of the reference strain BAA-1457 is not representative of the species.', Gut Pathogens, 3, pp. 15, http://dx.doi.org/10.1186/1757-4749-3-15

Goel A; Li SS; Wilkins MR, 2011, 'Four-dimensional visualisation and analysis of protein-protein interaction networks', Proteomics, 11, pp. 2672 - 2682

Couttas TA; Raftery MJ; Erce MA; Wilkins MR, 2011, 'Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome', Electrophoresis, 32, pp. 1819 - 1823, http://dx.doi.org/10.1002/elps.201100122

Deshpande NP; Kaakoush NO; Mitchell HM; Janitz K; Raftery MJ; Li SS; Wilkins MR, 2011, 'Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity', PLoS ONE, 6, pp. e22170, http://dx.doi.org/10.1371/journal.pone/0022170

Kaakoush NO; Deshpande NP; Wilkins MR; Tan C; Burgos-Portugal J; Raftery MJ; Day AS; Lemberg DA; Mitchell HM, 2011, 'The pathogenic potential of campylobacter concisus strains associated with chronic intestinal diseases', PLoS One, 6, pp. e29045, http://dx.doi.org/10.1371

Campbell M; Hayes C; Struwe WB; Wilkins MR; Aoki-kinoshita K; Harvey D; Rudd P; Kolarich D; Karlsson N; Packer N, 2011, 'UniCarbKB: putting the pieces together for glycomics research.', Proteomics, 11, pp. 4117 - 4121, http://dx.doi.org/10.1002

Li SS; Xu K; Wilkins MR, 2011, 'Visualization and analysis of the complexome network of Saccharomyces cerevisiae', Journal of Proteome Research, 10, pp. 4744 - 4756, http://dx.doi.org/10.1021/pr200548c

Twine NA; Janitz K; Wilkins MR; Janitz M, 2011, 'Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease', PLoS One, 6, pp. e16266, http://dx.doi.org/10.1371/journal.pone.0016266

Erce MA; Low J; Wilkins MR, 2010, 'Analysis of the RNA degradosome complex in Vibrio angustum S14', FEBS Journal, 277, pp. 5161 - 5173, http://dx.doi.org/10.1111/j.1742-4658.2010.07934.x

Wilkins MR, 2010, 'GlycoViewer: a tool for visual summary and comparative analysis of the glycome.', Nucleic Acids Research, 38, pp. 667 - 670

Wilkins MR; Pang I, 2010, 'Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications', BMC Genomics, 11, pp. 92, http://dx.doi.org/10.1186/1471-2164-11-92

Wilkins MR, 2010, 'Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance.', Journal of Proteome Research, 9, pp. 1218 - 1225

Okoli AS; Wilkins MR; Raftery MJ; Mendz GL, 2010, 'Response of Helicobacter hepaticus to bovine bile', Journal of Proteome Research, 9, pp. 1374 - 1384

Kaakoush NO; Man SM; Lamb S; Raftery MJ; Wilkins MR; Kovach Z; Mitchell HM, 2010, 'The secretome of Campylobacter concisus.', FEBS Journal, 277, pp. 1606 - 1617

Fung DCY; Wilkins MR; Hart D; Hong S-H, 2010, 'Using the clustered circular layout as an informative method for visualizing protein-protein interaction networks.', Proteomics, 10, pp. 2327 - 2723, http://dx.doi.org/10.1002/pmic.201000046

Wilkins M, 2009, 'A celebration of protein-protein interactions', Proteomics, 9, pp. 5207 - 5208, http://dx.doi.org/10.1002/pmic.200990092

Wilkins MR, 2009, 'Hares and tortoises: The high- versus low-throughput proteomic race', Electrophoresis, 30, pp. S150 - S155, http://dx.doi.org/10.1002/elps.200900175

Erce MA; Low J; March P; Wilkins MR; Takayama KM, 2009, 'Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1794, pp. 1107 - 1114

Little P; Williams RA; Wilkins MR, 2009, 'Inter-individual variation in expression: a missing link in biomarker biology?', Trends in Biotechnology, 27, pp. 5 - 10

Huang K; Filarsky M; Padula M; Raftery MJ; Herbert B; Wilkins MR, 2009, 'Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis', Proteomics, 9, pp. 2494 - 2502

Wilkins MR, 2009, 'Proteomic data mining', Expert Review of Proteomics, 6, pp. 599 - 603

Widjaja YY; Pang CN; Wilkins MR; Lambert TD; Li SS, 2009, 'The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell.', Proteomics, 9, pp. 5309 - 5315

Pang CN; Krycer JR; Lek A; Wilkins MR, 2008, 'Are protein complexes made of cores, modules and attachments?', Proteomics, 8, pp. 425 - 434, http://dx.doi.org/10.1002/pmic.200700801

Krycer JR; Pang CN; Wilkins MR; Pang I, 2008, 'High throughput protein-protein interaction data: clues for the architecture of protein complexes', Proteome Science, 6, pp. 32 - 32, http://dx.doi.org/10.1186/1477-5956-6-32

Couttas TA; Raftery MJ; Bernardini G; Wilkins MR, 2008, 'Immonium ion scanning for the discovery of post-translational modifications and its application to histones', Journal of Proteome Research, 7, pp. 2632 - 2641

Wilkins MR; Arthur J; Junius F; Harrison M; Traini M; Bizannes P; Doggett P; McDonald W, 2008, 'Information management for proteomics: a perspective', Expert Review of Proteomics, 5, pp. 663 - 678

Ho E; Webber R; Wilkins MR, 2008, 'Interactive three-dimensional visualization and contextual analysis of protein interaction networks', Journal of Proteome Research, 7, pp. 104 - 112, http://dx.doi.org/10.1021/pr070274m

Deshpande N; Wilkins MR; Packer N; Nevalainen H, 2008, 'Protein glycosylation pathways in filamentous fungi', Glycobiology, 18, pp. 626 - 637

Wilkins MR; Kummerfeld SK, 2008, 'Sticking together? Falling apart? Exploring the dynamics of the interactome', Trends in Biochemical Sciences, 33, pp. 195 - 200, http://dx.doi.org/10.1016/j.tibs.2008.03.001

Okoli AS; Wilkins MR; Raftery M; Mendz GL, 2007, 'Comparative proteomics study of effects of Helicobacter bilis on Huh7, Huh7 NNeo3-5B(RG), and cured-Huh7 NNeo3-SB(RG) cell lines', Helicobacter, 12, pp. 382 - 383

Wilkins MR, 2007, 'Lower-order versus higher-order proteomics: Time to move up?', Journal of Proteome Research, 6, pp. 2403

Hsu W; Pang CN; Sheetal J; Wilkins MR, 2007, 'Protein-protein interactions and disease: Use of S-cerevisiae as a model system', Biochimica et Biophysica ACTA - Proteins and Proteomics, 1774, pp. 838 - 847

Pang CN; Hayen A; Wilkins MR, 2007, 'Surface accessibility of protein post-translational modifications', Journal of Proteome Research, 6, pp. 1833 - 1845

Taylor C; Paton N; Lilley K; Binz P; Julian R; Jones AR; Zhu W; Apweiler R; Aebersold R; Deutsch E; Dunn MJ; Heck A; Leitner A; Macht M; Mann M; Martens L; Neubert T; Patterson S; Ping P; Seymour S; Souda P; Tsugita A; Vandekerckhove J; Vondriska T; Whitelegge J; Wilkins MR; Xenarios I; Yates J; Hermjakob H, 2007, 'The minimum information about a proteomics experiment (MIAPE)', Nature Biotechnology, 25, pp. 887 - 893

Ho E; Hayen A; Wilkins MR, 2006, 'Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis', Proteomics, 6, pp. 5746 - 5757

Wilkins MR; Appel R; Van Eyk J; Chung M; Gorg A; Hecker M; Huber L; Langen H; Link A; Paik Y; Patterson S; Pennington S; Rabilloud T; Simpson RJ; Weiss WA; Dunn MJ, 2006, 'Guidelines for the next 10 years of proteomics', Proteomics, 6, pp. 4 - 8

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