By Professor Marcel Dinger

Journal articles

Smart CE; Askarian-amiri ME; Wronski A; Dinger ME; Crawford JA; Ovchinnikov DA; Vargas AC; Reid LE; Simpson PT; Song S; Wiesner C; French JD; Dave RK; da Silva L; Purdon AS; Andrew M; Mattick JS; Lakhani SR; Brown MA; Kellie S, 2012, 'Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors', PLoS One, 7, pp. e40742, http://dx.doi.org/10.1371/journal.pone.0040742

Clark M; Johnston RL; Inostroza-Ponta M; Fox AH; Fortini E; Moscato P; Dinger ME; Mattick JS, 2012, 'Genome-wide analysis of long noncoding RNA stability', Genome Research, 22, pp. 885 - 898, http://dx.doi.org/10.1101/gr.131037.111

Gascoigne DK; Cheetham SW; Cattenoz PB; Clark M; Amaral PP; Taft R; Wilhelm D; Dinger ME; Mattick JS, 2012, 'Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes', Bioinformatics, 28, pp. 3042 - 3050, http://dx.doi.org/10.1093/bioinformatics/bts582

Bateman A; Agrawal S; Birney E; Bruford EA; Bujnicki JM; Cochrane G; Cole JR; Dinger ME; Enright AJ; Gardner PP; Gautheret D; Griffiths-Jones S; Harrow J; Herrero J; Holmes IH; Huang HDA; Kelly KA; Kersey P; Kozomara ANA; Lowe TM; Marz M; Moxon S; Pruitt KD; Samuelsson T; Stadler PF; Vilella AJ; Vogel JH; Williams KP; Wright MW; Zwieb C, 2011, 'RNAcentral: A vision for an international database of RNA sequences', RNA, 17, pp. 1941 - 1946, http://dx.doi.org/10.1261/rna.2750811

Mercer TR; Neph S; Dinger ME; Crawford J; Smith MA; Shearwood AMJ; Haugen E; Bracken CP; Rackham O; Stamatoyannopoulos JA; Filipovska A; Mattick JS, 2011, 'The human mitochondrial transcriptome', Cell, 146, pp. 645 - 658, http://dx.doi.org/10.1016/j.cell.2011.06.051

Bracken CP; Szubert JM; Mercer TR; Dinger ME; Thomson DW; Mattick JS; Michael MZ; Goodall GJ, 2011, 'Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage', Nucleic Acids Research, 39, pp. 5658 - 5668, http://dx.doi.org/10.1093/nar/gkr110

Khaitan D; Dinger ME; Mazar J; Crawford J; Smith MA; Mattick JS; Perera RJ, 2011, 'The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion', Cancer Research, 71, pp. 3852 - 3862, http://dx.doi.org/10.1158/0008-5472.CAN-10-4460

Askarian-Amiri ME; Crawford J; French JD; Smart CE; Smith MA; Clark MB; Ru K; Mercer TR; Thompson ER; Lakhani SR; Vargas AC; Campbell IG; Brown MA; Dinger ME; Mattick JS, 2011, 'SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer', RNA, 17, pp. 878 - 891, http://dx.doi.org/10.1261/rna.2528811

Mercer TR; Wilhelm D; Dinger ME; Soldà G; Korbie DJ; Glazov EA; Truong V; Schwenke M; Simons C; Matthaei KI; Saint R; Koopman P; Mattick JS, 2011, 'Expression of distinct RNAs from 3′ untranslated regions', Nucleic Acids Research, 39, pp. 2393 - 2403, http://dx.doi.org/10.1093/nar/gkq1158

Amaral PP; Clark MB; Gascoigne DK; Dinger ME; Mattick JS, 2011, 'LncRNAdb: A reference database for long noncoding RNAs', Nucleic Acids Research, 39, http://dx.doi.org/10.1093/nar/gkq1138

Dinger ME, 2011, 'LncRNAs: Finding the forest among the trees?', Molecular Therapy, 19, pp. 2109 - 2111, http://dx.doi.org/10.1038/mt.2011.251

Dinger ME; Gascoigne DK; Mattick JS, 2011, 'The evolution of RNAs with multiple functions', Biochimie, 93, pp. 2013 - 2018, http://dx.doi.org/10.1016/j.biochi.2011.07.018

Clark MB; Amaral PP; Schlesinger FJ; Dinger ME; Taft R; Rinn JL; Ponting CP; Stadler PF; Morris K; Morillon A; Rozowsky JS; Gerstein MB; Wahlestedt C; Hayashizaki Y; Carninci P; Gingeras TR; Mattick JS, 2011, 'The reality of pervasive transcription', PLoS Biology, 9, pp. e1000625, http://dx.doi.org/10.1371/journal.pbio.1000625

Mercer TR; Dinger ME; Bracken CP; Kolle G; Szubert JM; Korbie DJ; Askarian-Amiri ME; Gardiner BB; Goodall GJ; Grimmond SM; Mattick JS, 2010, 'Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome', Genome Research, 20, pp. 1639 - 1650, http://dx.doi.org/10.1101/gr.112128.110

Mazar J; Sinha S; Dinger ME; Mattick JS; Perera RJ, 2010, 'Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent', Molecular Genetics and Genomics, 284, pp. 1 - 9, http://dx.doi.org/10.1007/s00438-010-0543-6

Lai J; Lehman ML; Dinger ME; Hendy SC; Mercer TR; Seim I; Lawrence MG; Mattick JS; Clements JA; Nelson CC, 2010, 'A variant of the KLK4 gene is expressed as a cis sense-antisense chimeric transcript in prostate cancer cells', RNA, 16, pp. 1156 - 1166, http://dx.doi.org/10.1261/rna.2019810

Risueño A; Fontanillo C; Dinger ME; De Las Rivas J, 2010, 'GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs', BMC Bioinformatics, 11, pp. 221, http://dx.doi.org/10.1186/1471-2105-11-221

Mercer TR; Qureshi IA; Gokhan S; Dinger ME; Li G; Mattick JS; Mehler MF, 2010, 'Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation', BMC Neuroscience, 11, http://dx.doi.org/10.1186/1471-2202-11-14

Taft RJ; Pang KC; Mercer TR; Dinger M; Mattick JS, 2010, 'Non-coding RNAs: Regulators of disease', Journal of Pathology, 220, pp. 126 - 139, http://dx.doi.org/10.1002/path.2638

Dinger ME; Arefin AS; Berretta R; Moscato P, 2010, 'P4‐086: The Hippocampal Expression of 31 Noncoding Rnas is Upregulated in Alzheimer'S Disease Patients and Three Positively Correlate With MMSE Results and Other Biomarkers of Disease Progression', Alzheimer's & Dementia, 6, http://dx.doi.org/10.1016/j.jalz.2010.08.146

Dinger ME; Amaral PP; Mercer TR; Mattick JS, 2009, 'Pervasive transcription of the eukaryotic genome: Functional indices and conceptual implications', Briefings in Functional Genomics and Proteomics, 8, pp. 407 - 423, http://dx.doi.org/10.1093/bfgp/elp038

Pang KC; Dinger ME; Mercer TR; Malquori L; Grimmond SM; Chen W; Mattick JS, 2009, 'Genome-wide identification of long noncoding RNAs in CD8⁺ T cells', Journal of Immunology, 182, pp. 7738 - 7748, http://dx.doi.org/10.4049/jimmunol.0900603

Mercer TR; Dinger ME; Mattick JS, 2009, 'Long non-coding RNAs: Insights into functions', Nature Reviews Genetics, 10, pp. 155 - 159, http://dx.doi.org/10.1038/nrg2521

Sunwoo H; Dinger ME; Wilusz JE; Amaral PP; Mattick JS; Spector DL, 2009, 'Men ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles', Genome Research, 19, pp. 347 - 359, http://dx.doi.org/10.1101/gr.087775.108

Mattick JS; Amaral PP; Dinger ME; Mercer TR; Mehler MF, 2009, 'RNA regulation of epigenetic processes', BioEssays, 31, pp. 51 - 59, http://dx.doi.org/10.1002/bies.080099

Dinger ME; Pang KC; Mercer TR; Crowe ML; Grimmond SM; Mattick JS, 2009, 'NRED: A database of long noncoding RNA expression', Nucleic Acids Research, 37, http://dx.doi.org/10.1093/nar/gkn617

Mercer TR; Dinger ME; Mariani J; Kosik KS; Mehler MF; Mattick JS, 2008, 'Noncoding RNAs in long-term memory formation', Neuroscientist, 14, pp. 434 - 445, http://dx.doi.org/10.1177/1073858408319187

Dinger ME; Amara PP; Mercer TR; Pang KC; Bruce SJ; Gardiner BB; Askarian-Amiri ME; Ru K; Soldà G; Simons C; Sunkin SM; Crowe ML; Grimmond SM; Perkins AC; Mattick JS, 2008, 'Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation', Genome Research, 18, pp. 1433 - 1445, http://dx.doi.org/10.1101/gr.078378.108

Mattick JS; Croft LJ; Pheasant M; Mercer TR; Dinger ME, 2008, 'The mammalian genome as an RNA machine', FASEB JOURNAL, 22, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000208467805697&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Amaral PP; Dinger ME; Mercer TR; Mattick JS, 2008, 'The eukaryotic genome as an RNA machine', Science, 319, pp. 1787 - 1789, http://dx.doi.org/10.1126/science.1155472

Dinger ME; Mercer TR; Mattick JS, 2008, 'RNAs as extracellular signaling molecules', Journal of Molecular Endocrinology, 40, pp. 151 - 159, http://dx.doi.org/10.1677/JME-07-0160

Mercer TR; Dinger ME; Sunkin SM; Mehler MF; Mattick JS, 2008, 'Specific expression of long noncoding RNAs in the mouse brain', Proceedings of the National Academy of Sciences of the United States of America, 105, pp. 716 - 721, http://dx.doi.org/10.1073/pnas.0706729105

Dinger ME; Pang KC; Mercer TR; Mattick JS, 2008, 'Differentiating protein-coding and noncoding RNA: Challenges and ambiguities', PLoS Computational Biology, 4, http://dx.doi.org/10.1371/journal.pcbi.1000176

Mattick JS, 2007, 'The human genome as an RNA machine', Scientist, 21, pp. 61 - 63

Pang KC; Stephen S; Dinger ME; Engström PG; Lenhard B; Mattick JS, 2007, 'RNAdb 2.0 - An expanded database of mammalian non-coding RNAs', Nucleic Acids Research, 35, http://dx.doi.org/10.1093/nar/gkl926

Perkins A; Bruce S; Dinger M; Gardiner B; Steptoe A; Burke L; Mattick J; Grimmond S, 2006, 'Transcription factors, non-coding RNAs and ES cell differentiation in vitro and in vivo', TRANSGENIC RESEARCH, 15, pp. 778 - 778, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000242336100017&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Musgrave D; Zhang X; Dinger M, 2002, 'Archaeal genome organization and stress responses: Implications for the origin and evolution of cellular life', Astrobiology, 2, pp. 241 - 253, http://dx.doi.org/10.1089/153110702762027835

Dinger ME; Musgrave DR, 2000, 'Identification of archaeal genes encoding a novel stationary phase- response protein', Biochimica et Biophysica Acta - Gene Structure and Expression, 1490, pp. 115 - 120, http://dx.doi.org/10.1016/S0167-4781(99)00216-X

Dinger ME; Baillie GJ; Musgrave DR, 2000, 'Growth phase-dependent expression and degradation of histones in the thermophilic archaeon Thermococcus zilligii', Molecular Microbiology, 36, pp. 876 - 885, http://dx.doi.org/10.1046/j.1365-2958.2000.01904.x

Remaley AT; Rust S; Rosier M; Knapper C; Naudin L; Broccardo C; Peterson KM; Koch C; Arnould I; Prades C; Duverger N; Funke H; Assman G; Dinger M; Dean M; Chimini G; Santamarina-Fojo S; Fredrickson DS; Denefle P; Brewer HB, 1999, 'Human ATP-binding cassette transporter 1 (ABC1): Genomic organization and identification of the genetic defect in the original Tangier disease kindred', PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 96, pp. 12685 - 12690, http://dx.doi.org/10.1073/pnas.96.22.12685

Conference Papers

Wu J; Liu PY; Cheung B; Marshall G; Dinger M; Liu T, 2022, 'The novel long noncoding RNA lncNeur promotes neuroblastoma by up-regulating AURKA and Myc expression', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, LA, New Orleans, presented at Annual Meeting of the American-Association-for-Cancer-Research (AACR), LA, New Orleans, 08 April 2022 - 13 April 2022, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000892509503474&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Wu J; Liu PY; Cheung B; Marshall G; Dinger M; Liu T, 2022, 'The novel long noncoding RNA lncNeur promotes neuroblastoma by up-regulating AURKA and Myc expression.', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, LA, New Orleans, presented at Annual Meeting of the American-Association-for-Cancer-Research (AACR), LA, New Orleans, 08 April 2022 - 13 April 2022, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000892509501411&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Mondal S; Wong M; Tee A; Ho N; Ziegler DS; Marshall GM; Liu PY; Dinger M; Liu T, 2020, 'The super-enhancer driven long noncoding RNA lncNB promotes neuroblastoma tumorigenesis', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, ELECTR NETWORK, presented at AACR Annual Meeting, ELECTR NETWORK, 22 June 2020 - 24 June 2020, http://dx.doi.org/10.1158/1538-7445.AM2020-5721

Tee AE; Liu PY; Milazzo G; Hannan KM; Maag J; Bartonicek N; Song R; Jiang CC; Zhang XD; Norris MD; Haber M; Marshall GM; Li J; Vandesompele J; Mattick JS; Mestdagh P; Perini G; Hannan RD; Dinger ME; Liu T, 2018, 'Eradication of neuroblastoma by suppressing the expression of a single noncoding RNA', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, IL, Chicago, presented at Annual Meeting of the American-Association-for-Cancer-Research (AACR), IL, Chicago, 14 April 2018 - 18 April 2018, http://dx.doi.org/10.1158/1538-7445.AM2018-2453

Groza T; Roscioli T; Baynam G; Dawkins H; Haendel M; Mungall C; Smedley D; Robinson P; Dinger M; Zankl A, 2017, 'Patient Archive: A platform for clinical deep phenotyping', in EUROPEAN JOURNAL OF HUMAN GENETICS, NATURE PUBLISHING GROUP, DENMARK, Copenhagen, pp. 703 - 703, presented at 50th European-Society-of-Human-Genetics (ESHG) Conference, DENMARK, Copenhagen, 27 May 2017 - 30 May 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000489312606144&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Fisher OM; Maag JL; Levert-Mignon A; Kaczorowski DC; Thomas M; Hussey DJ; Watson DI; Wettstein A; Bobryshev YV; Edwards M; Dinger ME; Lord RV, 2016, 'Whole Transcriptome Sequencing Reveals Previously Unrecognized Alterations in Barrett's Esophagus and Esophageal Adenocarcinoma', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S854 - S854, presented at 57th Annual Meeting and Residents Fellow Conference of the Society-for-Surgery-of-the-Alimentary-Tract (SSAT) / 52nd Annual Meeting on Digestive Disease Week (DDW) / Meeting of the American-Gastroenterological-Association (AGA), CA, San Diego, 21 May 2016 - 24 May 2016, http://dx.doi.org/10.1016/S0016-5085(16)32882-7

Tee AE; Liu PY; Milazzo G; Vandesompele J; Marshall GM; Perini G; Mestdagh P; Dinger M; Liu T, 2016, 'Eradication of neuroblastoma by suppressing the expression of a single long noncoding RNA', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, LA, New Orleans, presented at AACR 107th Annual Meeting on Bioinformatics and Systems Biology, LA, New Orleans, 16 April 2016 - 20 April 2016, http://dx.doi.org/10.1158/1538-7445.AM2016-2664

Kumar M; DeVaux RS; Shen JJ; Davis SP; Dinger ME; Mattick JS; Perou CM; Rosen JM; Mani SA; Herschkowitz JI, 2016, 'LncRNA AK001796 as a therapeutic target in aggressive breast cancers', in CANCER RESEARCH, AMER ASSOC CANCER RESEARCH, LA, New Orleans, presented at 107th Annual Meeting of the American-Association-of-Cancer-Research (AACR), LA, New Orleans, 16 April 2016 - 20 April 2016, http://dx.doi.org/10.1158/1538-7445.AM2016-1598

Clark MB; Mercer TR; Leonardi T; Bussotti G; Crawford J; Nielsen LK; Enright AJ; Ponting CP; Dinger ME; Mattick JS, 2014, 'Quantitative gene expression profiling with targeted RNA sequencing', in FEBS JOURNAL, WILEY-BLACKWELL, FRANCE, Paris, pp. 45 - 45, presented at FEBS EMBO 2014 Conference, FRANCE, Paris, 30 August 2014 - 04 September 2014, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000359666800141&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Zhao W; Mazar J; Lee B; Shelley J; Govindarajan SS; Dinger ME; Perera RJ, 2014, 'The molecular function of the long noncoding RNA SPRY4-IT1 in human melanocytes', in FEBS JOURNAL, WILEY-BLACKWELL, FRANCE, Paris, pp. 399 - 399, presented at FEBS EMBO 2014 Conference, FRANCE, Paris, 30 August 2014 - 04 September 2014, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000359666802401&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

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