By Professor Rick Cavicchioli

Journal articles

Siddiqui KS; Ertan H; Charlton T; Poljakc A; Khaled AK; Yang X; Marshall G; Cavicchioli R; Poljak A, 2014, 'Versatile peroxidase degradation of humic substances: Use of isothermal titration calorimetry to assess kinetics, and applications to industrial wastes', Journal of Biotechnology, 178, pp. 1 - 11, http://dx.doi.org/10.1016/j.jbiotec.2014.03.002

Demaere MZ; Williams TJ; Allen MA; Brown MV; Gibson JAE; Rich J; Lauro FM; Dyall-Smith M; Davenport KW; Woyke T; Kyrpides NC; Tringe SG; Cavicchioli R, 2013, 'High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake', Proceedings of the National Academy of Sciences of the United States of America, 110, pp. 16939 - 16944, http://dx.doi.org/10.1073/pnas.1307090110

Wilkins D; Van sebille E; Rintoul S; Lauro FM; Cavicchioli R, 2013, 'Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects', Nature communications, 4, pp. 2457, http://dx.doi.org/10.1038/ncomms3457

Wilkins D; Lauro FM; Williams TJ; De Maere M; Brown MV; Hoffman JM; Andrews-Pfannkoch C; McQuaid J; Riddle M; Rintoul S; Cavicchioli R; DeMaere M, 2013, 'Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics', Environmental Microbiology, 15, pp. 1318 - 1333, http://dx.doi.org/10.1111/1462-2920.12035

Lagkouvardos I; Weinmaier T; Lauro FM; Cavicchioli R; Rattei T; Horn M, 2013, 'Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae', ISME Journal, 8, pp. 115 - 125, http://dx.doi.org/10.1038/ismej.2013.142

Wilkins D; Yau S; Williams TJ; Allen MA; Brown MV; Demaere MZ; Lauro FM; Cavicchioli R, 2013, 'Key microbial drivers in Antarctic aquatic environments', FEMS Microbiology Reviews, 37, pp. 303 - 335, http://dx.doi.org/10.1111/1574-6976.12007

Yau S; Lauro FM; Williams TJ; Brown MV; Demaere MZ; Rich J; Gibson J; Cavicchioli R, 2013, 'Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake', ISME Journal, 7, pp. 1944 - 1961, http://dx.doi.org/10.1038/ismej.2013.69

Swan B; Tupper B; Sczyrba A; Lauro FM; Martinez-Garcia M; González J; Luo H; Wright J; Landry Z; Hanson N; Thompson B; Poulton N; Schwientek P; Acinas S; Giovannoni S; Moran MA; Hallam S; Cavicchioli R; Woyke T; Stepanauskas R, 2013, 'Prevalent genome streamlining and latitudinal divergence of marine bacteria in the surface ocean', Proceedings of the National Academy of Sciences of the United States of America, 110, pp. 11463 - 11468, http://dx.doi.org/10.1073/pnas.1304246110

Siddiqui KS; Williams TJ; Wilkins D; Yau S; Allen MA; Brown MV; Lauro FM; Cavicchioli R, 2013, 'Psychrophiles', Annual Review of Earth and Planetary Sciences, 41, pp. 87 - 115, http://dx.doi.org/10.1146/annurev-earth-040610-133514

Matallana Surget S; Cavicchioli R; Fauconnier C; Wattiez R; Joux F; Leroy B; Raftery MJ; Lebaron P, 2013, 'Shotgun redox proteomics: Identification and Quantitation of Carbonylated Proteins in the UVB-Resistant Marine Bacterium, Photobacterium angustum S14', PLoS ONE, 8, pp. 1 - 15, http://dx.doi.org/10.1371/journal.pone.0068112

Williams TJ; Wilkins D; Long E; Evans FF; De Maere MZ; Raftery MJ; Cavicchioli R, 2013, 'The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics', Environmental Microbiology, 15, pp. 1302 - 1317, http://dx.doi.org/10.1111/1462-2920.12017

Grzymski J; Riesenfeld C; Williams TJ; Dussaq A; Ducklow H; Erickson M; Cavicchioli R; Murray A, 2012, 'A metagenomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters', ISME Journal, 6, pp. 1901 - 1915, http://dx.doi.org/10.1038/ismej.2012.31

Williams TJ; Long E; Evans F; DeMaere M; Lauro FM; Raftery MJ; Ducklow H; Grzymski J; Murray A; Cavicchioli R; De Maere M, 2012, 'A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters', ISME Journal, 6, pp. 1883 - 1900, http://dx.doi.org/10.1038/ismej.2012.28

Brown MV; Lauro FM; Demaere MZ; Muir L; Wilkins D; Thomas T; Riddle M; Fuhrman J; Andrews-Pfannkoch C; Hoffman JM; McQuaid J; Allen A; Rintoul S; Cavicchioli R, 2012, 'Global biogeography of SAR11 marine bacteria', Molecular Systems Biology, 8, pp. 595, http://dx.doi.org/10.1038/msb.2012.28

Ertan H; Siddiqui KS; Muenchhoff J; Charlton TS; Cavicchioli R, 2012, 'Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: insight into manganese peroxidase activation and lignin peroxidase inhibition', Biochimie, 94, pp. 1221 - 1231, http://dx.doi.org/10.1016/j.biochi.2012.02.012

Lauro FM; Demaere MZ; Yau S; Brown MV; Wilkins D; Ng SC; Raftery MJ; Gibson JA; Andrews-Pfannkoch C; Lewis M; Hoffman JM; Thomas T; Cavicchioli R, 2011, 'An integrative study of a meromictic lake ecosystem in Antarctica', ISME Journal, 5, pp. 879 - 895

Cavicchioli R, 2011, 'Archaea – timeline of the third domain', Nature Reviews Microbiology, 9, pp. 51 - 61

Cavicchioli R; Charlton T; Ertan H; Mohd Omar S; Siddiqui KS; Williams TJ, 2011, 'Biotechnological uses of enzymes from psychrophiles', Microbial Biotechnology, 4, pp. 449 - 460, http://dx.doi.org/10.1111/j.1751-7915.2011.00258.x

Pilak O; Harrop SJ; Siddiqui KS; Chong K; De Francisci D; Burg DW; Williams TJ; Cavicchioli R; Curmi PM, 2011, 'Chaperonins from an Antarctic archaeon are predominantly monomeric: open state crystal structure.', Environmental Microbiology, 13, pp. 2232 - 2249, http://dx.doi.org/10.1111/j.1462-2920.2011.02477.x

Williams TJ; Lauro FM; Ertan H; Burg DW; Poljak A; Raftery MJ; Cavicchioli R, 2011, 'Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics', Environmental Microbiology, 13, pp. 2186 - 2203, http://dx.doi.org/10.1111/j.1462-2920.2011.02467.x

Cavicchioli R; Amils R; Wagner D; McGenity T, 2011, 'Life and applications of extremophiles', Environmental Microbiology, 13, pp. 1903 - 1907

Yau S; Cavicchioli R, 2011, 'Microbial communities in Antarctic lakes: entirely new perspectives from metagenomics and metaproteomics.', Microbiology Australia, 32, pp. 157 - 159, http://dx.doi.org/10.1071/MA11157

Burg DW; Ng SC; Ting LL; Cavicchioli R, 2011, 'Proteomics of extremophiles', Environmental Microbiology, 13, pp. 1934 - 1955

Demaere MZ; Lauro FM; Thomas T; Yau S; Cavicchioli R, 2011, 'Simple high-throughput annotation pipeline (SHAP)', Bioinformatics, 27, pp. 2431 - 2432

Campanaro S; Williams TJ; Burg DW; De Francisci D; Treu L; Lauro FM; Cavicchioli R, 2011, 'Temperature-dependent global gene expression in the Antarctic archaeon, Methanococcoides burtonii.', Environmental Microbiology, 13, pp. 2018 - 2038

De Francisci D; Campanaro S; Kornfeld GD; Siddiqui KS; Williams TJ; Ertan H; Treu L; Pilak O; Lauro FM; Harrop SJ; Curmi PM; Cavicchioli R, 2011, 'The RNA polymerase subunits E/F from the Antarctic archaeon, Methanococcoides burtonii bind to specific classes of mRNA.', Environmental Microbiology, 13, pp. 2039 - 2055, http://dx.doi.org/10.1111/j.1462-2920.2010.02385.x

Yau S; Lauro FM; Demaere MZ; Brown MV; Thomas T; Raftery MJ; Lewis M; Hoffman JM; Gibson J; Cavicchioli R; Andrews-Pfannkoch C, 2011, 'Virophage control of Antarctic algal host–virus dynamics', Proceedings of the National Academy of Sciences of the United States of America, 108, pp. 6163 - 6168, http://www.ncbi.nlm.nih.gov/pubmed/21444812

Siddiqui KS; Poljak A; De Francisci D; Guerriero G; Pilak O; Burg DW; Raftery MJ; Parkin DM; Trewhella J; Cavicchioli R, 2010, 'A chemically modified alpha-amylase with a moltenglobule state has entropically driven enhanced thermal stability', Protein Engineering Design and Selection, 23, pp. 769 - 780

Burg DW; Lauro FM; Williams TJ; Raftery MJ; Guilhaus M; Cavicchioli R, 2010, 'Analyzing the hydrophobic proteome of the Antarctic archaeon Methanococcoides burtonii using differential solubility fractionation', Journal of Proteome Research, 9, pp. 664 - 676

Ting LL; Williams TJ; Cowley MJ; Lauro FM; Guilhaus M; Raftery MJ; Cavicchioli R, 2010, 'Cold adaptation in the marine bacterium, Sphingopyxis alaskensis assessed using quantitative proteomics.', Environmental Microbiology, 12, pp. 2658 - 2676

Williams TJ; Burg DW; Raftery MJ; Poljak A; Guilhaus M; Pilak O; Cavicchioli R, 2010, 'Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part I: The effect of growth temperature', Journal of Proteome Research, 9, pp. 640 - 652

Williams TJ; Burg DW; Ertan H; Raftery MJ; Poljak A; Guilhaus M; Cavicchioli R, 2010, 'Global proteomic analysis of the insoluble, soluble, and supernatant fractions of the psychrophilic archaeon Methanococcoides burtonii. Part II: The effect of different methylated growth substrates', Journal of Proteome Research, 9, pp. 653 - 663

Matallana Surget S; Douki T; Meador J; Cavicchioli R; Joux F, 2010, 'Influence of growth temperature and starvation state on survival and DNA damage induction in the marine bacterium Sphingopyxis alaskensis exposed to UV radiation.', Journal of Photochemistry and Photobiology B - Biology, 100, pp. 51 - 56

Ng SC; De Maere M; Williams TJ; Lauro FM; Raftery MJ; Gibson J; Andrews-Pfannkoch C; Lewis M; Hoffman J; Thomas T; Cavicchioli R, 2010, 'Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica.', ISME Journal, 4, pp. 1002 - 1019

Siddiqui KS; Parkin DM; Curmi PM; De Francisci D; Poljak A; Barrow KD; Noble M; Trewhella J; Cavicchioli R, 2009, 'A novel approach for enhancing the catalytic efficiency of a protease at low temperature: Reduction in substrate inhibition by chemical modification', Biotechnology and Bioengineering, 103, pp. 676 - 686

Williams TJ; Ertan H; Ting LL; Cavicchioli R, 2009, 'Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256', ISME Journal, 3, pp. 1036 - 1052

Cavicchioli R; Lauro FM, 2009, 'Effects of climate change on polar microbes', Microbiology Australia, 30, pp. 72 - 74, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000216282900006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Ting LL; Cowley MJ; Hoon S; Guilhaus M; Raftery MJ; Cavicchioli R, 2009, 'Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling', Molecular and Cellular Proteomics, 8, pp. 2227 - 2242

Matallana-Surget S; Douki T; Cavicchioli R; Joux F, 2009, 'Remarkable resistance to UVB of the marine bacterium Photobacterium angustum explained by an unexpected role of photolyase', Photochemical and Photobiological Sciences, 8, pp. 1313 - 1320

Allen MA; Lauro FM; Williams TJ; Burg DW; Siddiqui KS; De Francisci D; Chong K; Pilak O; Chew H; De Maere M; Ting LL; Katrib M; Ng SC; Sowers KR; Galperin M; Anderson I; Ivanova N; Dalin E; Martinez MP; Lapidus A; Hauser L; Land MH; Thomas T; Cavicchioli R, 2009, 'The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: The role of genome evolution in cold adaptation', ISME Journal, 3, pp. 1012 - 1035

Lauro FM; McDougald D; Thomas T; Williams TJ; Egan SG; Rice SA; Demaere MZ; Ting LL; Ertan H; Johnson J; Ferriera S; Lapidus A; Anderson IM; Kyrpides N; Munkf A; Detter C; Hang C; Brown M; Robb F; Kjelleberg S; Cavicchioli R, 2009, 'The genomic basis of trophic strategy in marine bacteria', Proceedings of the National Academy of Sciences of the United States of America, 106, pp. 15527 - 15533

Matallana-Surget S; Joux F; Raftery MJ; Cavicchioli R, 2009, 'The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics', Environmental Microbiology, 11, pp. 2660 - 2675

Cavicchioli R, 2007, 'Antarctic metagenomics', Microbiology Australia, 28, pp. 98 - 103

Thomas T; Egan SG; Burg DW; Ng SC; Ting LL; Cavicchioli R, 2007, 'Integration of genomics and proteomics into marine microbial ecology', Marine Ecology Progress Series, 332, pp. 291 - 299

Matallana Surget S; Joux F; Lebaron P; Cavicchioli R, 2007, 'Isolation and characterisation of marine oligotropic bacteria', Journal de la Societe de Biologie, 201, pp. 41 - 50

Cavicchioli R; Demaere MZ; Thomas T, 2007, 'Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated archaea: the role of ammonia oxidizers', BioEssays, 29, pp. 11 - 14

Giaquinto L; Curmi PM; Siddiqui KS; Poljak A; DeLong E; DasSarma S; Cavicchioli R, 2007, 'Structure and function of cold shock proteins in archaea', Journal of Bacteriology, 189, pp. 5738 - 5748

Cavicchioli R, 2006, 'Cold-adapted Archaea', Nature Reviews Microbiology, 4, pp. 331 - 343

Siddiqui KS; Cavicchioli R, 2006, 'Cold-adapted enzymes', Annual Review of Biochemistry, 75, pp. 403 - 433

Saunders NF; Ng SC; Raftery MJ; Guilhaus M; Goodchild A; Cavicchioli R, 2006, 'Proteomic and computational analysis of secreted proteins with type 1 signal peptides from the antarctic archaeon Methanococcoides burtonii', Journal of Proteome Research, 5, pp. 2457 - 2464

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