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Conference Abstracts
, 2022, '19th Annual Scientific Meeting, College of Pathologists, Academy of Medicine of Malaysia: Pathology and Laboratory Medicine: Current, Advancement and Emerging Trends, co-organised by Department of Pathology, Hospital Melaka, Department of Clinical Diagnostic Laboratories, Hospital Universiti Teknologi MARA (HUiTM) and the College of Pathologists, Academy of Medicine of Malaysia and held virtually on 22nd-24th June 2022. Abstracts of K. Prathap memorial lecture, plenary, symposium and paper (oral and poster) presented are as follows', in MALAYSIAN JOURNAL OF PATHOLOGY, MALAYSIAN JOURNAL PATHOLOGY, Vol. 44, pp. 303 - 364, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000862955200018&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2020, 'NOTIFIABLE INFECTIONS AMONG KIDNEY TRANSPLANT RECIPIENTS: A DATA-LINKAGE COHORT STUDY, NEW SOUTH WALES, 2000-2015', in NEPHROLOGY, WILEY, Vol. 25, pp. 38 - 38, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000592647200107&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2020, 'NEW BLOOD BORNE VIRUS INFECTIONS AMONG ORGAN TRANSPLANT RECIPIENTS: A DATA-LINKED COHORT STUDY EXAMINING TRANSMITTED AND DE NOVO HEPATITIS B, C AND HIV INFECTIONS', in TRANSPLANTATION, LIPPINCOTT WILLIAMS & WILKINS, ELECTR NETWORK, Vol. 104, pp. S318 - S318, presented at 28th International Congress of The-Transplantation-Society (TTS), ELECTR NETWORK, 13 September 2020 - 16 September 2020
, 2020, 'VACCINE-PREVENTABLE INFECTIONS AMONG SOLID ORGAN TRANSPLANT RECIPIENTS: A DATA-LINKED COHORT STUDY, AUSTRALIA, 2000-2015', in TRANSPLANTATION, LIPPINCOTT WILLIAMS & WILKINS, ELECTR NETWORK, Vol. 104, pp. S313 - S314, presented at 28th International Congress of The-Transplantation-Society (TTS), ELECTR NETWORK, 13 September 2020 - 16 September 2020
, 2020, 'The intestinal virome in children with cystic fibrosis differs from healthy controls', in Plos One, Vol. 15, http://dx.doi.org/10.1371/journal.pone.0233557
, 2019, 'Knowledge of congenital cytomegalovirus (CMV) in pregnant women in Australia is low, and improved with education', in Australian and New Zealand Journal of Obstetrics and Gynaecology, Vol. 59, pp. 843 - 849, http://dx.doi.org/10.1111/ajo.12978
, 2019, 'THE INTESTINAL VIROME IN CHILDREN WITH CYSTIC FIBROSIS: A PILOT STUDY', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, Vol. 156, pp. S241 - S241, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000467106000635&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2019, 'RESIDUAL RISK OF BLOOD BORNE VIRUS INFECTION WHEN AUSTRALIAN ORGAN DONOR REFERRALS TEST NEGATIVE: A SYSTEMATIC REVIEW AND META‐ANALYSIS', in Internal Medicine Journal, Wiley, Vol. 49, pp. 7 - 7, http://dx.doi.org/10.1111/imj.5_14295
, 2018, 'Incidence, Prevalence and Residual Infection Risk of HIV in Increased Risk Groups Presenting as Potential Organ Donors in Australia; A Systematic Review and Meta-Analysis', in TRANSPLANTATION, LIPPINCOTT WILLIAMS & WILKINS, SPAIN, Madrid, Vol. 102, pp. S356 - S356, presented at 27th International Congress of the Transplantation-Society (TTS), SPAIN, Madrid, 30 June 2018 - 05 July 2018, http://dx.doi.org/10.1097/01.tp.0000543099.22815.1d
, 2016, 'Successful treatment of recurrent ocular surface squamous neoplasia (OSSN) with topical cidofovir', in INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, ASSOC RESEARCH VISION OPHTHALMOLOGY INC, WA, Seattle, Vol. 57, presented at Annual Meeting of the Association-for-Research-in-Vision-and-Ophthalmology (ARVO), WA, Seattle, 01 May 2016 - 05 May 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000394210603367&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2015, 'HUMAN RHINOVIRUS INFECTIONS IN THE CLINICAL EXACERBATIONS OF CHILDREN WITH CYSTIC FIBROSIS', in RESPIROLOGY, WILEY-BLACKWELL, AUSTRALIA, Queensland, Vol. 20, pp. 47 - 47, presented at Thoracic Society Australia New Zealand Australian New Zealand Society Respiratory Science Annual Scientific Meeting 2015, AUSTRALIA, Queensland, 27 March 2015 - 01 April 2015, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000351464400124&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2015, 'Absence of seasonal peaks in human rhinovirus and asthma exacerbations in a cohort of children with asthma contrasts to community incidence of disease exacerbations', in Respirology, Wiley, Vol. 20, pp. 54 - 54, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000351464400143&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2014, 'SNEEZING LEADS TO WHEEZING: RHINOVIRUS INFECTION IN THE STUDY OF ASTHMA, VIRUSES AND ENVIRONMENT (SAVE) COHORT', in RESPIROLOGY, WILEY-BLACKWELL, Vol. 19, pp. 38 - 38, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000333238100092&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2014, 'Asthma Symptoms and Rhinovirus In A Longitudinal Children's Cohort', in The Journal of Allergy and Clinical Immunology, Elsevier, Vol. 133, pp. ab285, http://dx.doi.org/10.1016/j.jaci.2013.12.1010
, 2014, 'Differentially expressed circulating and cell associated microRNAs in the investigation of the role of viral infection in type 1 diabetes', in Qatar Foundation Annual Research Conference Proceedings, Hamad bin Khalifa University Press (HBKU Press), Vol. 2014, presented at Qatar Foundation Annual Research Conference, http://dx.doi.org/10.5339/qfarc.2014.HBPP0482
, 2014, 'Under-ascertainment of Illness due to Influenza in Administrative Databases, a Population-based Record Linkage Study', in Online J Public Health Inform, University of Illinois at Chicago Library, Vol. 6, pp. e169, http://dx.doi.org/10.5210/ojphi.v6i1.5189
, 2003, 'Hepatitis C virus reinfection within a cohort of injecting drug users.', in HEPATOLOGY, W B SAUNDERS CO, MASSACHUSETTS, BOSTON, Vol. 38, pp. 266A - 266A, presented at 54th Annual Meeting of the American-Association-for-the-Study-of-Liver-Disease, MASSACHUSETTS, BOSTON, 24 October 2003 - 28 October 2003, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000185816700230&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
, 2000, 'Hepatitis C Virus prevalence and genotype among Australian injecting drug users in the 1970s.', in HEPATOLOGY, W B SAUNDERS CO, Vol. 32, pp. 279A - 279A, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000089622400468&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
Working Papers
, Ageing impairs the airway epithelium defence response to SARS-CoV-2, Cold Spring Harbor Laboratory, http://dx.doi.org10.1101/2021.04.05.437453
Preprints
, 2026, Identifying Research Priorities for the Prevention and Early Management of Congenital Cytomegalovirus (CMV) in Australia and New Zealand: A Modified Delphi Consensus Informed by Lived Experience, http://dx.doi.org/10.21203/rs.3.rs-9709413/v1
, 2025, Replication of SARS-CoV-2 Omicron lineages is defined by TMPRSS2 use in environments where ACE2 is complexed with solute carriers SLC6A19 and SLC6A20, http://dx.doi.org/10.1101/2025.07.07.663433
, 2022, Enterovirus Infection and Risk of Islet Autoimmunity and Type 1 Diabetes: Systematic Review and Meta-Analysis of Molecular Studies, http://dx.doi.org/10.2139/ssrn.4308770
, 2022, SARS-CoV-2 Omicron: evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern, http://dx.doi.org/10.21203/rs.3.rs-1207364/v1
, 2020, Changes in the composition and function of the gut microbiome accompany type 1 diabetes in pregnancy, http://dx.doi.org/10.21203/rs.3.rs-18520/v1
, Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis, http://dx.doi.org/10.1101/2020.08.04.236893
, Antiviral efficacy versus host recovery: contrasting transcriptional footprints of four antivirals in human cytomegalovirus-infected brain organoids, http://dx.doi.org/10.64898/2026.05.01.722178
, Assessment of inter-laboratory differences in SARS-CoV-2 consensus genome assemblies between public health laboratories in Australia, http://dx.doi.org/10.1101/2021.08.19.21262296
, Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance, http://dx.doi.org/10.1101/2023.02.01.526694
, Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients, http://dx.doi.org/10.1101/2022.10.19.512954
, Chimeric synthetic reference standards enable cross-validation of positive and negative controls in SARS-CoV-2 molecular tests, http://dx.doi.org/10.1101/2020.06.09.143412
, Cross-sectional and longitudinal genotype to phenotype surveillance of SARS-CoV-2 variants over the first four years of the COVID-19 pandemic, http://dx.doi.org/10.1101/2024.04.18.24305862
, Differences in Antibiotic and Antiviral Use in People With Confirmed Influenza: a Retrospective Comparison of Rapid Influenza PCR and Multiplex Respiratory Virus PCR Tests., http://dx.doi.org/10.21203/rs.3.rs-109807/v1
, Emergence and antibody evasion of BQ, BA.2.75 and SARS-CoV-2 recombinant sublineages in the face of maturing antibody breadth at the population level, http://dx.doi.org/10.1101/2022.12.06.22283000
, Epidemiological and Genomic analysis of a Sydney Hospital COVID-19 Outbreak, http://dx.doi.org/10.1101/2021.02.17.21251943
, Highly conserved interaction profiles between clinically relevant mutants of the cytomegalovirus CDK-like kinase pUL97 and human cyclins: functional significance of cyclin H, http://dx.doi.org/10.21203/rs.3.rs-1676959/v1
, Long-term serial passaging of SARS-CoV-2 reveals signatures of convergent evolution, http://dx.doi.org/10.1101/2023.11.02.565396
, Longitudinal characterisation of phagocytic and neutralisation functions of anti-Spike antibodies in plasma of patients after SARS-CoV-2 infection, http://dx.doi.org/10.1101/2021.12.21.473774
, Persistence of a SARS-CoV-2 variant with a frameshifting deletion for the duration of a major outbreak, http://dx.doi.org/10.1101/2022.09.06.22279658
, Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies, http://dx.doi.org/10.1101/2020.12.14.422791
, Probiotics and the EARly Life effects on intestinal bacteria and inflammation in children with Cystic Fibrosis (The “PEARL-CF” Study), http://dx.doi.org/10.64898/2025.12.04.25341620
, Proficiency Testing for bacterial whole genome sequencing in assuring the quality of microbiology diagnostics in clinical and public health laboratories, http://dx.doi.org/10.1101/2020.09.18.304519
, Rapid isolation and resolution immune evasion and viral fitness across contemporary SARS-CoV-2 variants, http://dx.doi.org/10.21203/rs.3.rs-1210846/v1
, Rapid spread of a SARS-CoV-2 Delta variant with a frameshift deletion in ORF7a, http://dx.doi.org/10.1101/2021.08.18.21262089
, Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing, http://dx.doi.org/10.21203/rs.3.rs-105996/v1
, SARS Coronavirus-2 microneutralisation and commercial serological assays correlated closely for some but not all enzyme immunoassays, http://dx.doi.org/10.1101/2020.12.07.20245696
, SARS-CoV-2 in human milk is inactivated by Holder pasteurization but not cold storage, http://dx.doi.org/10.1101/2020.06.18.20134395
, SARS-CoV-2 neutralizing antibodies; longevity, breadth, and evasion by emerging viral variants, http://dx.doi.org/10.1101/2020.12.19.20248567
, SARS-CoV-2 Omicron BA.5: Evolving tropism and evasion of potent humoral responses and resistance to clinical immunotherapeutics relative to viral variants of concern, http://dx.doi.org/10.1101/2022.07.07.22277128
, Serological detection of SARS-CoV-2 IgG using commercially available immunoassays on dried blood spots collected from patients, http://dx.doi.org/10.1101/2021.08.11.21261877
, The seroprevalence of SARS-CoV-2-specific antibodies in Australian children: a cross sectional study, http://dx.doi.org/10.1101/2024.03.03.24303672