By Professor Miles Davenport

Journal articles

Ebrahimi D; Alinejad-Rokny H; Davenport MP; Ebrahimi Mohammadi D, 2014, 'Insights into the motif preference of APOBEC3 enzymes', PLoS ONE, 9, pp. e87679, http://dx.doi.org/10.1371/journal.pone.0087679

Fergusson JR; Smith KE; Fleming VM; Rajoriya N; Newell EW; Simmons R; Marchi E; Björkander S; Kang YH; Swadling L; Kurioka A; Sahgal N; Lockstone H; Baban D; Freeman GJ; Sverremark-Ekström E; Davis MM; Davenport MP; Venturi V; Ussher JE; Willberg CB; Klenerman P, 2014, 'CD161 defines a transcriptional and functional phenotype across distinct human T cell lineages', Cell Reports, 9, pp. 1075 - 1088, http://dx.doi.org/10.1016/j.celrep.2014.09.045

Jiang W; Souheil-Antoine Y; Funderburg NT; Mudd JC; Espinosa E; Davenport MP; Babineau DC; Sieg SF; Lederman MM, 2014, 'Cycling memory CD4⁺ T cells in HIV disease have a diverse T cell receptor repertoire and a phenotype consistent with bystander activation', Journal of Virology, 88, pp. 5369 - 5380, http://dx.doi.org/10.1128/JVI.00017-14

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2014, 'Decreased growth rate of P. falciparum blood stage parasitemia with age in a holoendemic population', Journal of Infectious Diseases, 209, pp. 1136 - 1143, http://dx.doi.org/10.1093/infdis/jit613

McGary CS; Cervasi B; Chahroudi A; Micci L; Taaffe J; Meeker T; Silvestri G; Davenport MP; Paiardini M, 2014, 'Increased stability and limited proliferation of CD4⁺ central memory T cells differentiate nonprogressive simian immunodeficiency virus (SIV) infection of sooty mangabeys from progressive SIV infection of rhesus macaques', Journal of Virology, 88, pp. 4533 - 4542, http://dx.doi.org/10.1128/JVI.03515-13

Petravic J; Ellenberg P; Chan ML; Paukovics G; Smyth RP; Mak J; Davenport MP, 2014, 'Intracellular dynamics of HIV infection', Journal of Virology, 88, pp. 1113 - 1124, http://dx.doi.org/10.1128/JVI.02038-13

Gooneratne SL; Alinejad-Rokny H; Ebrahimi D; Bohn PS; Wiseman RW; O'Connor DH; Davenport MP; Kent SJ, 2014, 'Linking pig-tailed macaque major histocompatibility complex class I haplotypes and cytotoxic T lymphocyte escape mutations in simian immunodeficiency virus infection', Journal of Virology, 88, pp. 14310 - 14325, http://dx.doi.org/10.1128/JVI.02428-14

Petravic J; Martyushev A; Reece JC; Kent SJ; Davenport MP, 2014, 'Modeling the timing of antilatency drug administration during HIV treatment', Journal of Virology, 88, pp. 14050 - 14056, http://dx.doi.org/10.1128/JVI.01701-14

Kent SJ; Davenport MP, 2014, 'Tentative first steps to eradicate latent HIV', The Lancet HIV, 1, pp. e2 - e3, http://dx.doi.org/10.1016/S2352-3018(14)70015-3

Pastori C; Diomede L; Venuti A; Fisher G; Jarvik J; Bomsel M; Sanvito F; Lopalco L, 2014, 'Induction of HIV-blocking anti-CCR5 IgA in Peyers's patches without histopathological alterations.', J Virol, 88, pp. 3623 - 3635, http://dx.doi.org/10.1128/JVI.03663-13

Jegaskanda S; Amarasena TH; Laurie KL; Tan HX; Butler J; Parsons MS; Alcantara S; Petravic J; Davenport MP; Hurt AC; Reading PC; Kent SJ, 2013, 'Standard trivalent influenza virus protein vaccination does not prime antibody-dependent cellular cytotoxicity in macaques', Journal of Virology, 87, pp. 13706 - 13718, http://dx.doi.org/10.1128/JVI.01666-13

Pinkevych M; Petravic J; Chelimo K; Vulule J; Kazura JW; Moormann AM; Davenport MP, 2013, 'Density-dependent blood stage Plasmodium falciparum suppresses malaria super-infection in a malaria holoendemic population', American Journal of Tropical Medicine and Hygiene, 89, pp. 850 - 856, http://dx.doi.org/10.4269/ajtmh.13-0049

Khoury DS; Cromer D; Best SE; James KR; Kim PS; Engwerda CR; Haque A; Davenport MP, 2013, 'Effect of mature, blood-stage Plasmodium parasite sequestration on pathogen biomass in mathematical and in vivo models of malaria.', Infection and Immunity, 82, pp. 212 - 220, http://dx.doi.org/10.1128/IAI.00705-13

Petravic J; Vanderford TH; Silvestri G; Davenport M, 2013, 'Estimating the contribution of the gut to plasma viral load in early SIV infection', Retrovirology, 10, pp. 105, http://dx.doi.org/10.1186/1742-4690-10-105

Tey SK; Kennedy GA; Cromer D; Davenport MP; Walker S; Jones LI; Crough T; Durrant ST; Morton JA; Butler JP; Misra AK; Hill GR; Khanna R, 2013, 'Clinical Assessment of Anti-Viral CD8+ T Cell Immune Monitoring Using QuantiFERON-CMV® Assay to Identify High Risk Allogeneic Hematopoietic Stem Cell Transplant Patients with CMV Infection Complications', PLoS ONE, 8, pp. e74744, http://dx.doi.org/10.1371/journal.pone.0074744

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, 25, pp. 606 - 607, http://dx.doi.org/10.1016/j.coi.2013.09.001

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, 25, pp. 639 - 645, http://dx.doi.org/10.1016/j.coi.2013.07.001

Davenport MP; Dunn-Walters DK, 2013, 'Immunogenetics and transplantation', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.09.001

Reece J; Petravic J; Balamurali M; Loh L; Gooneratne S; De Rose R; Kent SJ; Davenport MP, 2013, 'Correction: An “Escape Clock” for Estimating the Turnover of SIV DNA in Resting CD4+ T Cells', PLoS Pathogens, 9, http://dx.doi.org/10.1371/annotation/7556ed6f-2d66-48a9-be38-4aefe4400393

Rudd BD; Venturi V; Smith NL; Nzingha K; Goldberg EL; Li G; Nikolich-Zugich J; Davenport MP, 2013, 'Acute Neonatal Infections 'Lock-In' a Suboptimal CD8+ T Cell Repertoire with Impaired Recall Responses', PLoS Pathogens, 9, pp. e1003572, http://dx.doi.org/10.1371/journal.ppat.1003572

Venturi V; Rudd BD; Davenport MP, 2013, 'Specificity, promiscuity, and precursor frequency in immunoreceptors', Current Opinion in Immunology, http://dx.doi.org/10.1016/j.coi.2013.07.001

Kent SJ; Reece JC; Petravic J; Martyushev A; Kramski M; De Rose R; Cooper DA; Kelleher AD; Emery S; Cameron PU; Lewin SR; Davenport MP, 2013, 'The search for an HIV cure: Tackling latent infection', The Lancet Infectious Diseases, 13, pp. 614 - 621, http://dx.doi.org/10.1016/S1473-3099(13)70043-4

Reece JC; Alcantara S; Gooneratne S; Jegaskanda S; Amaresena T; Fernandez CS; Laurie K; Hurt A; O'Connor SL; Harris M; Petravic J; Martyushev A; Grimm A; Davenport MP; Stambas J; De Rose R; Kent SJ, 2013, 'Trivalent live attenuated influenza-simian immunodeficiency virus vaccines: Efficacy and evolution of cytotoxic T lymphocyte escape in macaques', Journal of Virology, 87, pp. 4146 - 4160, http://dx.doi.org/10.1128/JVI.02645-12

Anwar F; Davenport MP; Ebrahimi Mohammadi D, 2013, 'Footprint of APOBEC3 on the genome of human retroelements', Journal of Virology, 87, pp. 8195 - 8204

Greenaway HY; Ng B; Price D; Douek DC; Davenport MP; Venturi V, 2013, 'NKT and MAIT invariant TCRalpha sequences can be produced efficiently by VJ gene recombination', Immunobiology, 218, pp. 213 - 224, http://dx.doi.org/10.1016/j.imbio.2012.04.003

Plotkin SA; Robinson HL; Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine.', Nature medicine, 18, pp. 1020 - 1021

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Correction: Early Priming Minimizes the Age-Related Immune Compromise of CD8⁺T Cell Diversity and Function', PLoS Pathogens, 8, http://dx.doi.org/10.1371/annotation/e142f9de-7f30-4759-bda1-a651e86d5ba6

Reece J; Petravic J; Balamurali M; Loh L; De Rose R; Kent SJ; Davenport MP, 2012, 'An “Escape clock” for estimating the turnover of SIV DNA in resting CD4+ T cells', PLoS Pathogens, 8, pp. e1002615, http://dx.doi.org/10.1371/journal.ppat.1002615

Ebrahimi Mohammadi D; Anwar F; Davenport MP, 2012, 'APOBEC3G and APOBEC3F rarely co-mutate the same HIV genome', Retrovirology, 9, pp. 113, http://dx.doi.org/10.1186/1742-4690-9-113

Venturi V; Davenport MP; Doherty PC; Kedzierska K, 2012, 'Consequences of suboptimal priming are apparent for low-avidity T-cell responses', Immunology and Cell Biology, 90, pp. 216 - 223, http://dx.doi.org/10.1038/icb.2011.36

Valkenburg SA; Venturi V; Dang THY; Bird NL; Doherty PC; Turner SJ; Davenport MP; Kedzierska K, 2012, 'Early priming minimizes the age-related immune compromise of CD8 + T cell diversity and function', PLoS Pathogens, 8, pp. Article number e1002544, http://dx.doi.org/10.1371/journal.ppat.1002544

Smithey MJ; Li G; Venturi V; Davenport MP; Nikolich-Zugich J, 2012, 'Lifelong persistent viral infection alters the naive T cell pool, impairing CD8 T cell immunity in late life', Journal of Immunology, 189, pp. 5356 - 5366, http://dx.doi.org/10.4049/jimmunol.1201867

Davenport MP, 2012, 'Mining the mechanisms of an HIV vaccine', Nature Medicine, 18, pp. 1020 - 1021, http://dx.doi.org/10.1038/nm.2858

Pinkevych M; Petravic J; Chelimo K; Kazura J; Moormann A; Davenport MP, 2012, 'The Dynamics of Naturally Acquired Immunity to Plasmodium falciparum Infection', PLoS Computational Biology, 8, pp. Article number e1002729, http://dx.doi.org/10.1371/journal.pcbi.1002729

Smyth R; Davenport MP; Mak J, 2012, 'The origins of genetic diversity in HIV-1', Virus Research, 169, pp. 415 - 429, http://dx.doi.org/10.1016/j.virusres.2012.06.015

Kedzierska K; Valkenburg S; Doherty PC; Davenport MP; Venturi V, 2012, 'Use it or lose it: establishment and persistence of T cell memory', Frontiers in Immunology, 3, pp. 1 - 11, http://dx.doi.org/10.3389/fimmu.2012.00357

Schlub TE; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Hill AB; Brossay L; Oxenius A; Davenport MP, 2011, 'Comparing the kinetics of NK cells, CD4, and CD8 T cells in murine cytomegalovirus infection', Journal of Immunology, 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1100416

Davenport MP; Ebrahimi Mohammadi D; Anwar F, 2011, 'APOBEC3 Has Not Left an Evolutionary Footprint on the HIV-1 Genome', Journal of Virology, 85, pp. 9139 - 9146, http://jvi.asm.org/content/85/17/9139.full?sid=ca96d928-5132-4714-b693-bde43f5124ed

Davenport MP; Schlub T; Sun JC; Walton SM; Robbins SH; Pinto AK; Munks MW; Brossay L; Hill AB; Oxenius A, 2011, 'Comparing the Kinetics of NK Cells, CD4, and CD8 T Cells in Murine Cytomegalovirus Infection', Journal of Immunology, 187, pp. 1385 - 1392, http://dx.doi.org/10.4049/jimmunol.1190037

Paiardini M; Cervasi B; Reyes-Aviles E; Micci L; Ortiz AM; Chahroudi AM; Vinton C; Gordon SN; Bosinger SE; Francella N; Hallberg PL; Schlub T; Chan ML; Riddick NE; Collman RG; Apetrei C; Pandrea I; Else JG; Munch J; Kirchhoff F; Davenport MP; Brenchley JM; Silvestri G; Cramer EM, 2011, 'Low levels of SIV infection in sooty mangabey central memory CD4 + T cells are associated with limited CCR5 expression', Nature Medicine, 17, pp. 830 - 836, http://dx.doi.org/10.1038/nm.2395

Rudd BD; Venturi V; Li G; Samadder P; Ertelt JM; Way SS; Davenport MP; Nikolich-Zugich J, 2011, 'Nonrandom attrition of the naive CD8+ T-cell pool with aging governed by T-cell receptor: pMHC interactions', Proceedings of the National Academy of Sciences of the United States of America, 108, pp. 13694 - 13699, http://dx.doi.org/10.1073/pnas.1107594108

Petravic J; Davenport MP, 2011, 'Simian-human immunodeficiency infection - is the course set in the acute phase?', PLoS One, 6, pp. e17180 - e17189, http://dx.doi.org/10.1371/journal.pone.0017180

Coupland LA; Cromer D; Davenport MP; Parish CR, 2010, 'A novel fluorescent-based assay reveals that thrombopoietin signaling and Bcl-X(L) influence, respectively, platelet and erythrocyte lifespans', Experimental Hematology, 38, pp. 453 - 461

Schlub TE; Smyth RP; Grimm AJ; Mak J; Davenport MP, 2010, 'Accurately measuring recombination between closely related HIV-1 genomes', PLoS Computational Biology, 6, pp. e1000766, http://dx.doi.org/10.1371/journal.pcbi.1000766

Rajasuriar R; Booth D; Solomon A; Chua K; Spelman T; Gouillou M; Schlub TE; Davenport MP; Crowe S; Elliott J; Hoy J; Fairley C; Stewart G; Cameron P; Lewin SR, 2010, 'Biological determinants of immune reconstitution in HIV-infected patients receiving antiretroviral therapy: the role of IL 7/IL-7Ra and microbial translocation', Journal of Infectious Diseases, 202, pp. 1254 - 1264

Davenport MP; Petravic J, 2010, 'CD8+ T cell control of HIV-- a known unknown', PLoS Pathogens, 6, pp. e1000728, http://dx.doi.org/10.1371/journal.ppat.1000728

Mrass P; Petravic J; Davenport MP; Weninger W, 2010, 'Cell-autonomous and environmental contributions to the interstitial migration of T cells', Seminars In Immunopathology, 32, pp. 257 - 274

Quigley MF; Greenaway HY; Venturi V; Lindsay R; Quinn KM; Seder RA; Douek DC; Davenport MP; Price DA, 2010, 'Convergent recombination shapes the clonotypic landscape of the naïve T-cell repertoire', Proceedings of the National Academy of Sciences of the United States of America, 107, pp. 19414 - 19419, http://dx.doi.org/10.1073/pnas.1010586107

Rudd BD; Venturi V; Smithey MJ; Way SS; Davenport MP; Nikolich-Zugich J, 2010, 'Diversity of the CD8+ T Cell repertoire elicited against an immunodominant epitope does not depend on the context of infection', Journal of Immunology, 184, pp. 2958 - 2965

Liang SX; Pinkevych M; Khachigian LM; Parish CR; Davenport MP; Chong BH, 2010, 'Drug-induced thrombocytopenia (DITP): development of a novel NOD/SCID mouse model to evaluate clearance of circulating platelets by drug-dependent antibodies and the efficacy of IVIG', Blood, 116, pp. 1958 - 1960

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