By Professor Miles Davenport

Book Chapters

Hill AVS; Yates SNR; Allsopp CEM; Gupta S; Gilbert SC; Lalvani A; Aidoo M; Davenport M; Plebanski M, 1997, 'Human leukocyte antigens and natural selection by malaria', in Infection, Polymorphism and Evolution, Springer Netherlands, pp. 109 - 115, http://dx.doi.org/10.1007/978-94-009-0077-6_12

Davenport MP; Hill AVS, 1996, 'The MHC in Host-Pathogen Evolution', in MHC Molecules: Expression, Assembly and Function, Springer US, pp. 243 - 260, http://dx.doi.org/10.1007/978-1-4684-6462-7_15

Journal articles

Skinner MJ; Kedzierski L; Purcell RA; Mayo M; Middleton BF; Allen LF; Hagen RR; Hinchcliff A; Clark M; Kent C; Aban M; Peck H; McQuilten HA; Reynaldi A; Holloway AI; Tan A; Rigas V; Gargen E; Davenport MP; Kent SJ; Barr I; Tan HX; Wheatley AK; Chung AW; Nelson J; Miller A; Nguyen THO; Davies J; Rowntree LC; Kedzierska K, 2026, 'Atypical B cells and inflammatory profiles delineate immunity to influenza vaccination in First Nations and non-Indigenous people with chronic multimorbidity', Nature Communications, 17, http://dx.doi.org/10.1038/s41467-026-73988-z

Brasel T; Brangel P; Adetifa I; Baize S; Benkeser D; Bertoletti A; Bukreyev A; Charlton S; Cramer J; Cross RW; Davenport MP; Emperador D; Formenty P; Follmann D; Garry RF; Gilbert PB; Gilbert SC; Gollihar JD; Grassly NC; Gruber M; Gupta SB; Günther S; Hacker A; Hoath C; Holbrook MR; Killip M; King D; Mandi H; Munster VJ; Mukandavire C; Oestereich L; Okogbenin S; Oloo P; Paessler S; Plotkin S; Richert L; Safronetz D; Saphire EO; Sette A; Shurtleff A; Granerod J; Wohl D; Zaric M; Ramsauer K; Dahlke C, 2026, 'Searching for immune correlates in Lassa vaccine development – workshop report', Npj Vaccines, 11, http://dx.doi.org/10.1038/s41541-026-01452-6

Whaley P; Vist GE; Ames HM; Bearth A; Di Consiglio E; Husøy T; Spyropoulou A; Svendsen C; Tcheremenskaia O; Davenport MP; Hartung T; Hoffmann S; Hooijmans CR; McCann S; Prieto P; Rooney AA; Spilioti E; Mathisen GH, 2026, 'External validity for in vitro toxicity studies: an important but challenging concept', Regulatory Toxicology and Pharmacology, 171, http://dx.doi.org/10.1016/j.yrtph.2026.106185

Csolle MP; Bailey BA; Chung Y; Zazryn TR; Turner T; Khoury DS; Davenport MP, 2026, 'Accelerating the research response to the Bundibugyo virus emergency', Nature Immunology, 27, pp. 1765 - 1766, http://dx.doi.org/10.1038/s41590-026-02623-2

Gubser C; Rajdev L; Chiu CY; Li S; Brochut M; King H; Tumpach C; Pascoe RD; Durand CM; Chang JJ; Solomon A; Cao R; Martelotto L; Bethony JM; Utzschneider DT; Kallies A; Davenport MP; Anderson JL; Rasmussen TA; Schroeder J; Lewin SR, 2026, 'In vivo effect of anti-PD-1 on HIV-specific CD8+T-cells in men with HIV', Nature Communications, 17, pp. 10024, http://dx.doi.org/10.1038/s41467-026-77373-8

Elias KM; Mitchell A; Stadler E; Schlub TE; Khan SR; Xue C; Kent SJ; Cromer D; Davenport MP; Khoury DS, 2026, 'Neutralising antibodies and protection from progression to severe COVID-19: A meta-analysis', Plos Medicine, 23, pp. e1005230, http://dx.doi.org/10.1371/journal.pmed.1005230

Stadler E; Mordant F; Gartner M; Docken SS; Davenport MP; Khoury DS; Subbarao K, 2026, 'Reconciliation of titer differences between SARS-CoV-2 neutralizing antibody assays.', Journal of Virology, pp. e0082326, http://dx.doi.org/10.1128/jvi.00823-26

de Moerlooze L; Allen A; Bartalesi I; Cavaleri M; Davenport MP; Gessner BD; Gomes B; Hayford K; Izu A; Izurieta HS; Jenkins VA; Kastner R; Krause P; Nealon J; Oostvogels L; Palmu AA; Read RC; Saenz C; Smith DK; Tuboi S; Vandendriessche F; Baay M; Craig D; Neels P; Bollaert K, 2026, 'Alternative approaches to phase III clinical trials for vaccine efficacy and licensure: the role of real-world evidence – a meeting report', Biologicals, 95, http://dx.doi.org/10.1016/j.biologicals.2026.101886

Pinkevych M; Docken SS; Wu Y; Schlub T; Harper JL; Viox EG; Samer S; Kulpa D; Betts MR; Keele BF; Paiardini M; Bar KJ; Cromer D; Davenport MP, 2026, 'The rebound-initiating viral reservoir (RIVR) in SIV/SHIV infection is dominated by plasma virus sequences present at the time of ART initiation', Journal of Virology, 100, http://dx.doi.org/10.1128/jvi.00366-26

Papargyris L; Xu J; Broderick C; Huang A; Gore T; Reynaldi A; Dayananda P; Collins AM; Ascough S; Wong N; Guy J; Song J; Kar S; Bergstrom E; Slater L; Gardener Z; Paterson S; Marjaneh MM; Nichols SJ; Wright VJ; Park MK; McKendry R; Nicholson B; McClain M; Burke TW; Wagstaffe H; Klein J; Levin M; Grifoni A; Woods CW; Davenport MP; Tsang JS; Chain B; Kaforou M; Chiu C, 2026, 'Innate immune responsiveness predicts enhanced cellular immunity and symptomatic disease after controlled human influenza infection', Nature Medicine, 32, pp. 2556 - 2569, http://dx.doi.org/10.1038/s41591-026-04483-7

Tabilas C; Venturi V; Kean C; Minervina A; Thomas PG; Grimson A; Grenier JK; Davenport MP; Smith NL; Rudd BD, 2026, 'Single-cell gene expression and TCR profiling reveal age-related differences in recent thymic emigrants', Iscience, 29, pp. 115582, http://dx.doi.org/10.1016/j.isci.2026.115582

Reynaldi A; Lee WS; Selva KJ; Audsley J; Trieu MC; Chung AW; Cromer D; Tan HX; Wheatley AK; Juno JA; Khoury DS; Davenport MP; Kent SJ, 2026, 'Immune responses associated with protection from SARS-CoV-2 infection', Vaccine, 81, http://dx.doi.org/10.1016/j.vaccine.2026.128579

Carey DL; Ahlenstiel G; Brilot F; Brown DA; Bull R; Crowther H; Cunningham A; Davenport MP; Diamond P; Hamad N; Johnston A; Kelleher AD; Lee FJ; Matthews GV; Petoumenos K; Quichua GC; Swaminathan S; Trotman J; Turville S; Vukic S; Wong P; Sasson SC, 2026, 'Comparison of immunity-boosting regimens for COVID-19 upon initiation of immunosuppressive therapy (CIRCUIT): study protocol for a randomised, controlled clinical trial', BMJ Open, 16, pp. e115259, http://dx.doi.org/10.1136/bmjopen-2025-115259

Docken SS; Macairan A; Schlub TE; Fennessey CM; Varco-Merth B; Picker LJ; Okoye AA; Immonen TT; Cromer D; Keele BF; Davenport MP, 2026, 'Dissecting the steps in early simian immunodeficiency virus dissemination following mucosal and intravenous infection of rhesus macaques', Journal of Virology, 100, http://dx.doi.org/10.1128/jvi.01485-25

Stadler E; Khan SR; Elias KM; Egilmezer E; Phetsouphanh C; Hastak P; Hewavisenti RV; Joshi RV; Turner T; Cromer D; Sasson SC; Davenport MP; Khoury DS, 2026, 'COVID-19 vaccine effectiveness in people on immunosuppressive therapies: a systematic review and meta-analysis', Lancet Microbe, http://dx.doi.org/10.1016/j.lanmic.2026.101424

Mathisen GH; Svendsen C; Vist GE; Husøy T; Ames HM; Bearth A; Audebert M; Bernhard A; Beronius A; Bruzell EM; Di Consiglio E; Davenport M; Druwe I; Geci R; Gundert-Remy U; Hartung T; Hoffmann S; Hogberg HT; Hooijmans CR; Lizarraga LE; Olker JH; Prieto P; Robinson JF; Rooney AA; Sebollela A; Smith NM; Spilioti E; Spyropoulou A; Tcheremenskaia O; Testai E; Wang A; Yost E; Zilliacus J; Whaley P, 2025, 'Identification of concepts of importance for the assessment of internal validity of in vitro toxicology studies using a modified Delphi technique', Evidence-Based Toxicology, 3, http://dx.doi.org/10.1080/2833373x.2025.2551013

Venkatesh K; Schlub TE; Barreto SG; Andersen CR; Davenport MP; Delaney A; Kaambwa B; Bihari S; Pilcher D; Sasson SC, 2025, 'A prediction model for ‘ICU mortality or prolonged ICU stay’ in critically unwell patients with acute pancreatitis: insights from a 2003–2020 cohort analysis using the ANZICS-CORE database', Critical Care, 29, http://dx.doi.org/10.1186/s13054-025-05590-6

Trieu MC; Reynaldi A; Lee WS; Tan HX; Kelly A; Esterbauer R; Cox RJ; Audsley J; Sasadeusz J; Khoury DS; Davenport MP; Cromer D; Wheatley AK; Kent SJ; Juno JA, 2025, 'Bivalent mRNA booster vaccination recalls cellular and antibody immunity against antigenically divergent SARS-CoV-2 spike antigens', Npj Vaccines, 10, pp. 74, http://dx.doi.org/10.1038/s41541-025-01129-6

Bearth A; Kopainsky B; Jones LB; Vist GE; Husøy T; Svendsen C; Whaley P; Hoffmann S; Ames HM; Solstad G; Bloch D; Čavoški A; Chiu WA; Davenport M; Davies HG; Giusti A; Hartung T; Kwon S; Osborne OJ; Rooney AA; Rousselle C; Sass JB; Wright FA; Mathisen GH, 2025, 'Exploring experiences of the regulatory toxicology system: system-level promoters and inhibitors of new approach methodologies', Archives of Toxicology, 99, pp. 4909 - 4930, http://dx.doi.org/10.1007/s00204-025-04168-z

Claiborne DT; Detwiler Z; Docken SS; Borland TD; Cromer D; Simkhovich A; Ophinni Y; Okawa K; Bateson T; Chen T; Hudson W; Trifonova R; Davenport MP; Ho TW; Boutwell CL; Allen TM, 2025, 'High frequency CCR5 editing in human hematopoietic stem progenitor cells protects xenograft mice from HIV infection', Nature Communications, 16, pp. 446, http://dx.doi.org/10.1038/s41467-025-55873-3

Berry MT; MacIntyre CR; Cromer D; Hacker A; Davenport MP; Khoury DS, 2025, 'Optimal deployment of limited vaccine supplies to control mpox outbreaks', Npj Vaccines, 10, http://dx.doi.org/10.1038/s41541-025-01289-5

Pampena MB; Samer S; Viox EG; Nguyen K; Deleage C; Kuri-Cervantes L; Regan J; Wu VH; Docken S; Safrit JT; Bar KJ; Keele BF; Davenport MP; Paiardini M; Betts MR, 2025, 'Therapeutic CD8+ T cell tissue retention and immunomodulation during ART interruption fail to prevent SIV rebound', Proceedings of the National Academy of Sciences of the United States of America, 122, http://dx.doi.org/10.1073/pnas.2501037122

Hilt ZT; Reynaldi A; Steinhilber M; Zhang S; Wesnak SP; Smith NL; Davenport MP; Rudd BD, 2025, 'Recent thymic emigrants preferentially undergo memory inflation after persistent infection', Plos Pathogens, 21, http://dx.doi.org/10.1371/journal.ppat.1013382

Khoury DS; Cromer D; Bailey B; Khan SR; Burnett DL; Kent SJ; Rudd BD; Marchant A; Turner T; Davenport MP, 2025, 'Towards evidence-based immunology', Nature Immunology, 26, pp. 980 - 982, http://dx.doi.org/10.1038/s41590-025-02180-0

Dhenni R; Hoppé AC; Reynaldi A; Kyaw W; Handoko NT; Grootveld AK; Keith YH; Bhattacharyya ND; Ahel HI; Telfser AJ; McCorkindale AN; Yazar S; Bui CHT; Smith JT; Khoo WH; Boyd M; Obeid S; Milner B; Starr M; Brilot F; Milogiannakis V; Akerman A; Aggarwal A; Davenport MP; Deenick EK; Chaffer CL; Croucher PI; Brink R; Goldstein LD; Cromer D; Turville SG; Kelleher AD; Venturi V; Munier CML; Phan TG, 2025, 'Macrophages direct location-dependent recall of B cell memory to vaccination', Cell, 188, pp. 3477 - 3496.e22, http://dx.doi.org/10.1016/j.cell.2025.04.005

Koutsakos M; Reynaldi A; Aban M; Barr IG; Khoury DS; Davenport MP; Ellebedy AH; Mudd PA, 2025, 'Binding antibody titers against the hemagglutinin and neuraminidase correlate with protection against medically attended influenza A and B disease', Journal of Virology, 99, pp. e00391 - e00325, http://dx.doi.org/10.1128/jvi.00391-25

Lee WS; Selva KJ; Audsley J; Kent HE; Reynaldi A; Schlub TE; Cromer D; Khoury DS; Peck H; Aban M; Vu MN; Zheng MZM; Chung AW; Koutsakos M; Tan HX; Wheatley AK; Juno JA; Rockman S; Davenport MP; Barr I; Kent SJ, 2025, 'Randomized trial of same- versus opposite-arm coadministration of inactivated influenza and SARS-CoV-2 mRNA vaccines', Jci Insight, 10, pp. e187075, http://dx.doi.org/10.1172/jci.insight.187075

Ashley CL; Bloul M; Alca S; Smith L; Jin W; Khoury D; Counoupas C; Davenport M; Triccas JA; Steain M, 2025, 'Optimisation of a multiplexed, high throughput assay to measure neutralising antibodies against SARS-CoV-2 variants', Journal of Virological Methods, 332, pp. 115073, http://dx.doi.org/10.1016/j.jviromet.2024.115073

Hastak P; Cromer D; Malycha J; Andersen CR; Raith E; Davenport MP; Plummer M; Sasson SC, 2024, 'Defining the correlates of lymphopenia and independent predictors of poor clinical outcome in adults hospitalized with COVID-19 in Australia', Scientific Reports, 14, pp. 11102, http://dx.doi.org/10.1038/s41598-024-61729-5

Cromer D; Reynaldi A; Mitchell A; Schlub TE; Juno JA; Wheatley AK; Kent SJ; Khoury DS; Davenport MP, 2024, 'Predicting COVID-19 booster immunogenicity against future SARS-CoV-2 variants and the benefits of vaccine updates', Nature Communications, 15, pp. 8395, http://dx.doi.org/10.1038/s41467-024-52194-9

Berry MT; Khan SR; Schlub TE; Notaras A; Kunasekaran M; Grulich AE; MacIntyre CR; Davenport MP; Khoury DS, 2024, 'Predicting vaccine effectiveness for mpox', Nature Communications, 15, pp. 3856, http://dx.doi.org/10.1038/s41467-024-48180-w

Kent SJ; Li S; Amarasena TH; Reynaldi A; Lee WS; Leeming MG; O’Connor DH; Nguyen J; Kent HE; Caruso F; Juno JA; Wheatley AK; Davenport MP; Ju Y, 2024, 'Blood Distribution of SARS-CoV-2 Lipid Nanoparticle mRNA Vaccine in Humans', ACS Nano, 18, pp. 27077 - 27089, http://dx.doi.org/10.1021/acsnano.4c11652

Lee WS; Audsley J; Trieu MC; Reynaldi A; Aurelia LC; Mehta PH; Patterson J; Kent HE; Nguyen J; Amarasena T; Esterbauer R; Haycroft ER; Ramanathan P; Davenport MP; Schlub TE; Sasadeusz J; Wheatley AK; Chung AW; Juno JA; Selva KJ; Kent SJ, 2024, 'Randomized controlled trial reveals no benefit to a 3-month delay in COVID-19 mRNA booster vaccine', Journal of Clinical Investigation, 134, pp. e181244, http://dx.doi.org/10.1172/JCI181244

Underwood AP; Gupta M; Wu BR; Eltahla AA; Boo I; Wang JJ; Agapiou D; Abayasingam A; Reynaldi A; Keoshkerian E; Zhao Y; Brasher N; Walker MR; Bukh J; Maher L; Gordon T; Davenport MP; Luciani F; Drummer HE; Lloyd AR; Bull RA, 2024, 'B-cell characteristics define HCV reinfection outcome', Journal of Hepatology, 81, pp. 415 - 428, http://dx.doi.org/10.1016/j.jhep.2024.04.004

Varco-Merth B; Chaunzwa M; Duell DM; Marenco A; Goodwin W; Dannay R; Nekorchuk M; Shao D; Busman-Sahay K; Fennessey CM; Silipino L; Hull M; Bosche WJ; Fast R; Oswald K; Shoemaker R; Bochart R; MacAllister R; Labriola CS; Smedley JV; Axthelm MK; Davenport MP; Edlefsen PT; Estes JD; Keele BF; Lifson JD; Lewin SR; Picker LJ; Okoye AA, 2024, 'Impact of alemtuzumab-mediated lymphocyte depletion on SIV reservoir establishment and persistence', Plos Pathogens, 20, pp. e1012496, http://dx.doi.org/10.1371/journal.ppat.1012496

Elias KM; Khan SR; Stadler E; Schlub TE; Cromer D; Polizzotto MN; Kent SJ; Turner T; Davenport MP; Khoury DS, 2024, 'Viral clearance as a surrogate of clinical efficacy for COVID-19 therapies in outpatients: a systematic review and meta-analysis', Lancet Microbe, 5, pp. e459 - e467, http://dx.doi.org/10.1016/S2666-5247(23)00398-1

Keele BF; Okoye AA; Fennessey CM; Varco-Merth B; Immonen TT; Kose E; Conchas A; Pinkevych M; Lipkey L; Newman L; MacAiran A; Bosche M; Bosche WJ; Berkemeier B; Fast R; Hull M; Oswald K; Shoemaker R; Silipino L; Gorelick RJ; Duell D; Marenco A; Brantley W; Smedley J; Axthelm M; Davenport MP; Lifson JD; Picker LJ, 2024, 'Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir', Plos Pathogens, 20, pp. e1012135, http://dx.doi.org/10.1371/journal.ppat.1012135

Watson NB; Patel RK; Kean C; Veazey J; Oyesola OO; Laniewski N; Grenier JK; Wang J; Tabilas C; Yee Mon KJ; McNairn AJ; Peng SA; Wesnak SP; Nzingha K; Davenport MP; Tait Wojno ED; Scheible KM; Smith NL; Grimson A; Rudd BD, 2024, 'The gene regulatory basis of bystander activation in CD8+ T cells', Science Immunology, 9, pp. eadf8776 - eadf8776, http://dx.doi.org/10.1126/sciimmunol.adf8776

Wagstaffe HR; Thwaites RS; Reynaldi A; Sidhu JK; McKendry R; Ascough S; Papargyris L; Collins AM; Xu J; Lemm NM; Siggins MK; Chain BM; Killingley B; Kalinova M; Mann A; Catchpole A; Davenport MP; Openshaw PJM; Chiu C, 2024, 'Mucosal and systemic immune correlates of viral control after SARS-CoV-2 infection challenge in seronegative adults', Science Immunology, 9, pp. eadj9285 - eadj9285, http://dx.doi.org/10.1126/sciimmunol.adj9285

Purcell RA; Aurelia LC; Esterbauer R; Allen LF; Bond KA; Williamson DA; Trevillyan JM; Trubiano JA; Juno JJ; Wheatley AK; Davenport MP; Nguyen THO; Kedzierska K; Kent SJ; Selva KJ; Chung AW, 2024, 'Immunoglobulin G genetic variation can confound assessment of antibody levels via altered binding to detection reagents', Clinical and Translational Immunology, 13, pp. e1494, http://dx.doi.org/10.1002/cti2.1494

Stadler E; Cromer D; Ogunlade S; Ongoiba A; Doumbo S; Kayentao K; Traore B; Crompton PD; Portugal S; Davenport MP; Khoury DS, 2023, 'Evidence for exposure dependent carriage of malaria parasites across the dry season: modelling analysis of longitudinal data', Malaria Journal, 22, http://dx.doi.org/10.1186/s12936-023-04461-1

Stadler E; Burgess MT; Schlub TE; Khan SR; Chai KL; McQuilten ZK; Wood EM; Polizzotto MN; Kent SJ; Cromer D; Davenport MP; Khoury DS, 2023, 'Monoclonal antibody levels and protection from COVID-19', Nature Communications, 14, pp. 4545, http://dx.doi.org/10.1038/s41467-023-40204-1

Cromer D; Steain M; Reynaldi A; Schlub TE; Khan SR; Sasson SC; Kent SJ; Khoury DS; Davenport MP, 2023, 'Predicting vaccine effectiveness against severe COVID-19 over time and against variants: a meta-analysis', Nature Communications, 14, pp. 1633, http://dx.doi.org/10.1038/s41467-023-37176-7

Stadler E; Chai KL; Schlub TE; Cromer D; Khan SR; Polizzotto MN; Kent SJ; Beecher C; White H; Turner T; Skoetz N; Estcourt L; McQuilten ZK; Wood EM; Khoury DS; Davenport MP, 2023, 'Determinants of passive antibody efficacy in SARS-CoV-2 infection: a systematic review and meta-analysis', Lancet Microbe, 4, pp. e883 - e892, http://dx.doi.org/10.1016/S2666-5247(23)00194-5

Selva KJ; Ramanathan P; Haycroft ER; Tan CW; Wang LF; Downie LE; Davis SK; Purcell RA; Kent HE; Juno JA; Wheatley AK; Davenport MP; Kent SJ; Chung AW, 2023, 'Mucosal antibody responses following Vaxzevria vaccination', Immunology and Cell Biology, 101, pp. 975 - 983, http://dx.doi.org/10.1111/imcb.12685

Docken SS; McCormick K; Pampena MB; Samer S; Lindemuth E; Pinkevych M; Viox EG; Wu Y; Schlub TE; Cromer D; Keele BF; Paiardini M; Betts MR; Bar KJ; Davenport MP, 2023, 'Preferential selection of viral escape mutants by CD8+ T cell 'sieving' of SIV reactivation from latency', Plos Pathogens, 19, pp. e1011755, http://dx.doi.org/10.1371/journal.ppat.1011755

Pinkevych M; Docken SS; Okoye AA; Fennessey CM; Del Prete GQ; Pino M; Harper JL; Betts MR; Paiardini M; Keele BF; Davenport MP, 2023, 'Timing of initiation of anti-retroviral therapy predicts post-treatment control of SIV replication', Plos Pathogens, 19, pp. e1011660, http://dx.doi.org/10.1371/journal.ppat.1011660

Lansink LIM; Skinner OP; Engel JA; Lee HJ; Soon MSF; Williams CG; SheelaNair A; Pernold CPS; Laohamonthonkul P; Akter J; Stoll T; Hill MM; Talman AM; Russell A; Lawniczak M; Jia X; Chua B; Anderson D; Creek DJ; Davenport MP; Khoury DS; Haque A, 2023, 'Systemic host inflammation induces stage-specific transcriptomic modification and slower maturation in malaria parasites', Mbio, 14, pp. e0112923, http://dx.doi.org/10.1128/mbio.01129-23

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