By Professor Miles Davenport

Journal articles

Miles JJ; Bulek AM; Cole DK; Gostick E; Schauenburg AJ; Dolton G; Venturi V; Davenport MP; Tan MP; Burrows SR; Wooldridge L; Price DA; Rizkallah PJ; Sewell AK, 2010, 'Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus infection', PLoS Pathogens, 6, pp. e1001198, http://dx.doi.org/10.1371/journal.ppat.1001198

Schlub TE; Badovinac VP; Sabel JT; Harty JT; Davenport MP, 2010, 'Predicting CD62L expression during the CD8+ T-cell response in vivo', Immunology and Cell Biology, 88, pp. 157 - 164

Smyth RP; Schlub TE; Grimm A; Venturi V; Chopra A; Mallal S; Davenport MP; Mak J, 2010, 'Reducing chimera formation during PCR amplification to ensure accurate genotyping', Gene, 469, pp. 45 - 51

Reece JC; Loh L; Alcantara S; Fernandez CS; Stambas J; Sexton A; De Rose R; Petravic J; Davenport MP; Kent SJ, 2010, 'Timing of immune escape linked to success or failure of vaccination', PLoS One, 5, pp. 1 - 7, http://dx.doi.org/10.1371/journal.pone.0012774

Venturi V; Chin HY; Asher TE; Ladell K; Scheinberg P; Bornstein E; Van Bockel D; Kelleher AD; Douek DC; Price DA; Davenport MP, 2009, 'TCR β-chain sharing in human CD8⁺ T cell responses to cytomegalovirus and EBV', Journal of Immunology, 181, pp. 7853 - 7862, http://dx.doi.org/10.4049/jimmunol.181.11.7853

Loh L; Reece J; Petravic J; Center R; Davenport M; Kent SJ, 2009, 'P09-08. The complexity of the infecting inoculum determines the outcome of infection', Retrovirology, 6, http://dx.doi.org/10.1186/1742-4690-6-S3-P121

Davenport MP; Schlub T; Sabel JL; Harty JT; Badovinac VP, 2009, 'Cell division predicts CD62L expression in vivo (83.6)', The Journal of Immunology, 182, pp. 83.6 - 83.6, http://dx.doi.org/10.4049/jimmunol.182.supp.83.6

Rudd BD; Venturi V; Davenport MP; Smithey M; Alzhanova D; Way SS; Nikolich-Zugich J, 2009, 'Characterization of the diversity of the CD8+ T cell repertoire against the same epitope induced by bacterial or viral immunization (132.9)', The Journal of Immunology, 182, pp. 132.9 - 132.9, http://dx.doi.org/10.4049/jimmunol.182.supp.132.9

Loh L; Reece JC; Fernandez CS; Alcantara S; Center R; Purcell DF; Balamurali M; Petravic J; Davenport MP; Kent SJ; Howard J, 2009, 'Complexity of the inoculum determines the rate of reversion of SIV Gag CD8 T cell mutant virus and outcome of infection', PLoS Pathogens, 5, pp. e1000378, http://dx.doi.org/10.1371/journal.ppat.1000378

Kedzierska K; Valkenburg SA; Guillonneau C; Hubert FX; Cukalac T; Curtis JM; Stambas J; Scott HS; Kedzierski L; Venturi V; Davenport MP, 2009, 'Diversity and clonotypic composition of influenza-specific CD8+ TCR repertoires remain unaltered in the absence of Aire', European Journal of Immunology, 40, pp. 849 - 858

Schlub TE; Venturi V; Kedzierska K; Wellard C; Doherty PC; Turner SJ; Ribeiro RM; Hodgkin PD; Davenport MP, 2009, 'Division-linked differentiation can account for CD8+ T-cell phenotype in vivo', European Journal of Immunology, 39, pp. 67 - 77

Greenaway HY; Kurniawan M; Price DA; Douek DC; Davenport MP; Venturi V, 2009, 'Extraction and characterization of the rhesus macaque T-cell receptor beta-chain genes', Immunology and Cell Biology, 87, pp. 546 - 553

Yang H; Guimaraes-walker A; Hibbs S; Dong T; Stacey A; Borrow P; Hanke T; Davenport MP; Mcmichael A; Dorrell L, 2009, 'Interleukin-10 responses to therapeutic vaccination during highly active antiretroviral therapy and after analytical therapy interruption', AIDS, 23, pp. 2226 - 2230

Lay MD; Petravic J; Gordon SN; Engram J; Silvestri G; Davenport MP, 2009, 'Is the gut the major source of virus in early simian immunodeficiency virus infection?', Journal of Virology, 83, pp. 7517 - 7523, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2708631/pdf/0552-09.pdf

Lay MD; Zhang L; Ribeiro RM; Mueller SN; Belz GT; Davenport MP, 2009, 'Kinetics of major histocompatibility class I antigen presentation in acute infection', Journal of Immunology, 182, pp. 902 - 911

Cromer D; Stark J; Davenport MP, 2009, 'Low red cell production may protect against severe anemia during a malaria infection--insights from modeling', Journal of Theoretical Biology, 257, pp. 533 - 542

Cukalac T; Moffat JM; Venturi V; Davenport MP; Doherty PC; Turner SJ; Stambas J, 2009, 'Narrowed TCR diversity for immunised mice challenged with recombinant influenza A-HIV Env(311-320) virus.', Vaccine, 27, pp. 6755 - 6761

Price DA; Asher TE; Wilson NA; Nason MC; Brenchley JM; Metzler IS; Venturi V; Gostick E; Chattopadhyay PK; Roederer M; Davenport MP; Watkins DI; Douek DC, 2009, 'Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection', Journal of Experimental Medicine, 206, pp. 923 - 936, http://dx.doi.org/10.1084/jem.20081127

Davenport MP; Belz GT; Ribeiro RM, 2009, 'The race between infection and immunity: how do pathogens set the pace?', Trends in Immunology, 30, pp. 61 - 66

Petravic J; Loh L; Kent SJ; Davenport MP, 2008, 'CD4+ target cell availability determines the dynamics of immune escape and reversion in vivo', Journal of Virology, 82, pp. 4091 - 4101

Melenhorst JJ; Lay MD; Price DA; Adams SD; Barrett AJ; Zeilah J; Sosa E; Hensel NF; Follmann D; Douek DC; Davenport MP, 2008, 'Contribution of TCR-β Locus and HLA to the Shape of the Mature Human Vβ Repertoire', Journal of Immunology, 180, pp. 6484 - 6489

Rudd BD; Brien JD; Davenport MP; Nikolich-Zugich J, 2008, 'Cutting edge: TLR ligands increase TCR triggering by slowing peptide-MHC class I decay rates', Journal of Immunology, 181, pp. 5199 - 5203

Petravic J; Ribeiro RM; Casimiro DR; Mattapallil J; Roederer M; Shiver JW; Davenport MP, 2008, 'Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections', Journal of Virology, 82, pp. 11589 - 11598

Kedzierska K; Venturi V; Valkenburg SA; Davenport MP; Turner SJ; Doherty PC, 2008, 'Homogenization of TCR repertoires within secondary CD62Lhigh and CD62Llow virus-specific CD8+ T cell populations', Journal of Immunology, 180, pp. 7938 - 7947

Triccas JA; Davenport MP, 2008, 'Infectious diseases:too little, too late for tuberculosis', Immunology and Cell Biology, 86, pp. 293 - 294

Smith MZ; Asher TE; Venturi V; Davenport MP; Douek DC; Price DA; Kent SJ, 2008, 'Limited maintenance of vaccine-induced simian immunodeficiency virus-specific CD8 T-cell receptor clonotypes after virus challenge', Journal of Virology, 82, pp. 7357 - 7368

Venturi V; Kedzierska K; Tanaka MM; Turner SJ; Doherty PC; Davenport MP, 2008, 'Method for assessing the similarity between subsets of the T cell receptor repertoire', Journal of Immunological Methods, 329, pp. 67 - 80, http://dx.doi.org/10.1016/j.jim.2007.09.016

Davenport MP; Loh L; Petravic J; Kent SJ, 2008, 'Rates of HIV immune escape and reversion: implications for vaccination', Trends in Microbiology, 16, pp. 561 - 566

Venturi V; Chin HY; Asher TE; Ladell K; Scheinberg P; Bornstein E; van Bockel D; Kelleher AD; Douek DC; Price DA; Davenport MP, 2008, 'TCR beta-chain sharing in human CD8+ T cell responses to cytomegalovirus and EBV', Journal of Immunology, 181, pp. 7853 - 7862

Kedzierska K; Thomas PG; Venturi V; Davenport MP; Doherty PC; Turner SJ; La Gruta NL, 2008, 'Terminal deoxynucleotidyltransferase is required for the establishment of private virus-specific CD8+ TCR repertoires and facilitates optimal CTL responses', Journal of Immunology, 181, pp. 2556 - 2562

Chavez L; Davenport MP; Shiver JW; Tussey LG; Cox KS; Bachinsky M; Wang F; Huang L; Schleif WA; Davies ME; Tang A; Casimiro DR; Perelson AS; Ribeiro RM, 2008, 'The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection', Virology, 381, pp. 75 - 80

Venturi V; Price DA; Douek DC; Davenport MP, 2008, 'The molecular basis for public T-cell responses?', Nature Reviews Immunology, 8, pp. 231 - 238

Venturi V; Chin HY; Price DA; Douek DC; Davenport MP, 2008, 'The Role of Production Frequency in the Sharing of Simian Immunodeficiency Virus-Specific CD8+ TCRs between Macaques', Journal of Immunology, 181, pp. 2597 - 2609

Loh L; Petravic J; Batten CJ; Davenport MP; Kent SJ, 2008, 'Vaccination and timing influence SIV immune escape viral dynamics in vivo', PLoS Pathogens, 4, pp. e12, http://dx.doi.org/10.1371/journal.ppat.0040012

Karlsson AC; Iversen AKN; Chapman JM; de Oliveira T; Spotts G; McMichael AJ; Davenport MP; Hecht FM; Nixon DF, 2007, 'Sequential broadening of CTL responses in early HIV-1 infection is associated with viral escape', PLoS ONE, 2, pp. e225, http://dx.doi.org/10.1371/journal.pone.0000225

Orr Y; Wilson DP; Taylor JM; Bannon PG; Geczy C; Davenport MP; Kritharides L, 2007, 'A kinetic model of bone marrow neutrophil production that characterizes late phenotypic maturation', American Journal of Physiology - Regulatory Integrative and Comparative Physiology, 292, pp. R1707 - R1716

De Rose R; Batten CJ; Smith MZ; Fernandez CS; Peut V; Thomson S; Ramshaw IA; Coupar BE; Boyle DB; Venturi V; Davenport MP; Kent SJ, 2007, 'Comparative efficacy of subtype AE simian-human immunodeficiency virus priming and boosting vaccines in pigtail macaques', Journal of Virology, 81, pp. 292 - 300

Wilson DP; Mattapallil JJ; Lay MD; Zhang L; Roederer M; Davenport MP, 2007, 'Estimating the infectivity of CCR5-tropic simian immunodeficiency virus SIV(mac251) in the gut', Journal of Virology, 81, pp. 8025 - 8029

Loh L; Batten CJ; Petravic J; Davenport MP; Kent SJ, 2007, 'In vivo fitness costs of different Gag CD8 T-cell escape mutant simian-human immunodeficiency viruses for macaques', Journal of Virology, 81, pp. 5418 - 5422

Belz GT; Zhang L; Lay M; Kupresanin F; Davenport MP, 2007, 'Killer T cells regulate antigen presentation for early expansion of memory, but not naive, CD8+ T cell', Proceedings of the National Academy of Sciences of the United States of America, 104, pp. 6341 - 6346

Venturi V; Kedzierska K; Turner SJ; Doherty PC; Davenport MP, 2007, 'Methods for comparing the diversity of samples of the T cell receptor repertoire', Journal of Immunological Methods, 321, pp. 182 - 195

Crough T; Fazou C; Weiss J; Campbell S; Davenport MP; Bell SC; Galbraith A; McNeil K; Khanna R, 2007, 'Symptomatic and asymptomatic viral recrudescence in solid-organ transplant recipients and its relationship with the antigen-specific CD8(+) T-cell response', Journal of Virology, 81, pp. 11538 - 11542

Venturi V; Chin H; Asher T; Ladell K; Scheinberg P; Bornstein E; Van Bockel DJ; Kelleher AD; Douek DC; Price DA; Davenport MP, 2007, 'T cell receptor b-chain sharing in human CD8+ T cell responses to cytomegalovirus and Epstein-Barr virus', Journal of Immunology, 181, pp. 7853 - 7862

Davenport MP; Price DA; Mcmichael AJ, 2007, 'The T cell repertoire in infection and vaccination: implications for control of persistent viruses', Current Opinion in Immunology, 19, pp. 294 - 300

Davenport MP; Ribeiro RM; Zhang L; Wilson DP; Perelson AS, 2007, 'Understanding the mechanisms and limitations of immune control of HIV', Immunological Reviews, 216, pp. 164 - 175

Fernandez CS; Smith MZ; Batten CJ; De Rose R; Reece JC; Rollman E; Venturi V; Davenport MP; Kent SJ, 2007, 'Vaccine-induced T cells control reversion of AIDS virus immune escape mutants', Journal of Virology, 81, pp. 4137 - 4144

van Bockel D; Price DA; Asher TE; Venturi V; Suzuki K; Warton K; Davenport MP; Cooper DA; Douek DC; Kelleher AD, 2007, 'Validation of RNA-based molecular clonotype analysis for virus-specific CD8+ T-cells in formaldehyde-fixed specimens isolated from peripheral blood', Journal of Immunological Methods, 326, pp. 127 - 138, http://dx.doi.org/10.1016/j.jim.2007.07.016

Ribeiro RM; Hazenberg MD; Perelson AS; Davenport MP, 2006, 'Naïve and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: Implications for therapy', Journal of Virology, 80, pp. 802 - 809, http://dx.doi.org/10.1128/JVI.80.2.802-809.2006

La Gruta NL; Kedzierska K; Pang K; Davenport MP; Chen W; Turner SJ; Doherty PC; Webby R, 2006, 'A virus-specific CD8+ T cell immunodominance hierarchy determined by antigen dose and precursor frequencies', Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 994 - 999

Davenport MP; Venturi V; Kedzierska K; Field K; Turner SJ; Doherty PC, 2006, 'Early establishment of diverse T cell receptor profiles for influenza-specific CD8(+)CD62L(hi) memory T cells', Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 9184 - 9189

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