By Professor Miles Davenport

Journal articles

Davenport MP; Zhang L; Shiver JW; Casmiro DR; Ribeiro RM; Perelson AS, 2006, 'Influence of peak viral load on the extent of CD4+ T-cell depletion in simian HIV infection', JAIDS: Journal of Acquired Immune Deficiency Syndromes, 41, pp. 259 - 265

Davenport MP; Ribeiro RM; Hazenberg MD; Perelson AS, 2006, 'Naive and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus type 1: implications for therapy', Journal of Virology, 80, pp. 802 - 809

Cromer D; Evans KJ; Schofield L; Davenport MP, 2006, 'Preferential invasion of reticulocytes during late-stage Plasmodium berghei infection accounts for reduced circulating reticulocyte levels', International Journal for Parasitology, 36, pp. 1389 - 1397

Venturi V; Kedzierska K; Price DA; Doherty PC; Douek DC; Turner SJ; Davenport MP, 2006, 'Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination', Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 18691 - 18696

Davenport MP; Venturi V; Kedzierska K; Price DA; Doherty PC; Douek DC; Turner SJ, 2006, 'Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination', Proceedings of the National Academy of Sciences of the United States of America, 103, pp. 18691 - 18696

Godkin A; Davenport M; Hill AVS, 2005, 'Molecular analysis of HLA class II associations with hepatitis B virus clearance and vaccine non responsiveness', HEPATOLOGY, 41, pp. 1383 - 1390, http://dx.doi.org/10.1002/hep.20716

La Gruta N; Kedzierska K; Pang K; Webby R; Davenport MP; Chen W; Turner SJ; Doherty P, 2005, 'A virus specific CD8(+) T cell immunodominance hierarchy determined by precursor frequencies and antigen dose', Tissue Antigens, 66, pp. 469 - 470

Crough T; Burrows JM; Fazou C; Walker S; Davenport MP; Khanna R, 2005, 'Contemporaneous fluctuations in T cell responses to persistent herpes virus infections', European Journal of Immunology, 35, pp. 139 - 149

Kedzierska K; La Gruta NL; Davenport MP; Turner SJ; Doherty PC, 2005, 'Contribution of T cell receptor affinity to overall avidity for virus-specific CD8+ T cell responses', Proceedings of the National Academy of Sciences of the United States of America, 102, pp. 11432 - 11437

Fernandez C; Stratov I; De Rose R; Batten J; Smith M; Agy M; Hu SK; Krebs K; Watkins D; O Connor D; Davenport MP; Kent S, 2005, 'Control of T cell escape mutant viruses by effector T cells at transmission: Implications for the requirements of vaccine induced immunity to HIV', Tissue Antigens, 66, pp. 414 - 415

Kedzierska K; La Gruta N; Davenport MP; Turner SJ; Doherty P, 2005, 'Dissection of the high avidity clonotypes in virus-specific CD8+T cells and their dependence on `public` versus `private` nature of the TCR repertoire', Federation of American Societies for Experimantal Biology Journal, 19, pp. A401 - A402

Wilson DP; Zhang L; Ribeiro R; Perelson AS; Davenport MP, 2005, 'Explaining mechanisms behind the virus-specific CD8+T lymphocyte response to a viral infection', Tissue Antigens, 66, pp. 590 - 591

Venturi V; Kedzierska K; Turner SJ; Doherty P; Davenport MP, 2005, 'High degree of sharing of T cell receptor chain sequences in `Private` T cell repertoire', Tissue Antigens, 66, pp. 578 - 578

Davenport MP; Zhang L; Bagchi A; Fridman A; Fu TM; Schleif W; Shiver JW; Ribeiro RM; Perelson AS, 2005, 'High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved virus control', Journal of Virology, 79, pp. 10059 - 10062

Legrand FA; Abadi J; Jordan KA; Davenport MP; Deeks SG; Fennelly GJ; Wiznia AA; Nixon DF; Rosenberg MG, 2005, 'Partial treatment interruption of protease inhibitors augments HIV-specific immune responses in vertically infected pediatric patients', AIDS, 19, pp. 1575 - 1585

Fernandez CS; Stratov I; De Rose R; Walsh K; Dale CJ; Smith MZ; Agy MB; Hu SL; Krebs K; Watkins DI; O Connor DH; Davenport MP; Kent SJ, 2005, 'Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost', Journal of Virology, 79, pp. 5721 - 5731

Kent SJ; Fernandez CS; Dale CJ; Davenport MP, 2005, 'Reversion of immune escape HIV variants upon transmission: insights into effective viral immunity', Trends in Microbiology, 13, pp. 243 - 246, http://www.sciencedirect.com/science/article/B6TD0-4FTMM26-4/2/e8afbea904702fc224acbe284638f690

Chao DL; Davenport MP; Forrest S; Perelson AS, 2005, 'The effects of thymic selection on the range of T cell cross-reactivity', European Journal of Immunology, 35, pp. 3452 - 3459

Smith MZ; Fernandez CS; Chung A; Dale CJ; De Rose R; Lin J; Brooks AG; Krebs KC; Watkins DI; O Connor DH; Davenport MP; Kent SJ, 2005, 'The pigtail macaque MHC class I allele Mane-A*10 presents an immundominant SIV Gag epitope:identification, tetramer development and implications of immune escape and reversion', Journal of Medical Primatology, 34, pp. 282 - 293

Chao DL; Davenport MP; Forrest S; Perelson AS, 2004, 'A stochastic model of cytotoxic T cell responses', Journal of Theoretical Biology, 228, pp. 227 - 240

Zhang L; Ribeiro RM; Mascola JR; Lewis MG; Stiegler G; Katinger H; Perelson AS; Davenport MP, 2004, 'Effects of antibody on viral kinetics in simian/human immunodeficiency virus infection: implications for vaccination', Journal of Virology, 78, pp. 5520 - 5522

Davenport MP; Ribeiro RM; Perelson AS, 2004, 'Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency virus infection', Journal of Virology, 78, pp. 10096 - 10103

Chao DL; Davenport MP; Forrest S; Perelson AS, 2004, 'Modelling the impact of antigen kinetics on T-cell activation andresponse', Immunology and Cell Biology, 82, pp. 55 - 61

Davenport MP; Ribeiro RM; Chao DL; Perelson AS, 2004, 'Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus', Journal of Virology, 78, pp. 11340 - 11351

Chao DL; Davenport MP; Forrest S; Perelson AS, 2003, 'Stochastic stage-structured modeling of the adaptive immune system.', Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference., 2, pp. 124 - 131

GODKIN A; DAVENPORT M; THURSZ M; HILL A, 2003, '956 Molecular interactions of hepatitis B virus nucleocapsid and envelope peptides with HLA-DR1, -DR3, -DR7 and -DR13 glycoproteins', Hepatology, 38, pp. 618 - 618, http://dx.doi.org/10.1016/s0270-9139(03)80994-1

Murray JM; Kaufmann GR; Hodgkin PD; Lewin SR; Kelleher AD; Davenport MP; Zaunders JJ, 2003, 'Naive T cells maintained by thymic output in early ages but by proliferation without phenotypic change after age twenty', Immunology and Cell Biology, 81, pp. 487 - 495

Davenport MP; Zaunders JJ; Hazenberg MD; Schuitemaker H; van Rij RP, 2002, 'Cell turnover and cell tropism in HIV-1 infection', Trends in Microbiology, 10, pp. 275 - 278

Davenport MP; Fazou C; Mcmichael AJ; Callan MF, 2002, 'Clonal selection, clonal senescence, and clonal succession: the evolution of the T cell response to infection with a persistent virus', Journal of Immunology, 168, pp. 3309 - 3317

Morrison D; FitzPatrick D; Hanson I; Williamson K; van Heyningen V; Fleck B; Jones I; Chalmers J; Campbell H, 2002, 'National study of microphthalmia, anophthalmia, and coloboma (MAC) in Scotland: investigation of genetic aetiology.', J Med Genet, 39, pp. 16 - 22, http://dx.doi.org/10.1136/jmg.39.1.16

Davenport MP; Ward RL; Hawkins NJ, 2002, 'The null oncogene hypothesis and protection from cancer', Journal of Medical Genetics, 39, pp. 12 - 14

Davenport MP; Post JJ, 2001, 'Rapid disease progression and the rate of spread of the HIV epidemic', AIDS, 15, pp. 2055 - 2057, http://dx.doi.org/10.1097/00002030-200110190-00024

Davenport MP; Post JJ, 2001, 'Rapid disease and the rate of spread of the HIV epidemic', AIDS, 15, pp. 2055 - 2059

Davenport MP, 2000, 'Benefits of memory.', Nature immunology, 1, pp. 451

Davenport MP; Grimm MC; Lloyd AR, 2000, 'A homing selection hypothesis for T-cell trafficking', Immunology Today, 21, pp. 315 - 317

Davenport MP, 2000, 'Benefits of memory', Nature Immunology, 1, pp. 451

Davenport MP, 2000, 'Reversibility of HIV drug resistance', Science, pp. 1299a

Harcourt GC; Garrard S; Davenport MP; Edwards A; Phillips RE, 1998, 'HIV-1 variation diminishes CD4 T lymphocyte recognition', Journal of Experimental Medicine, 188, pp. 1785 - 1793, http://dx.doi.org/10.1084/jem.188.10.1785

Godkin AJ; Davenport MP; Willis A; Jewell DP; Hill AVS, 1998, 'Use of complete eluted peptide sequence data from HLA-DR and -DQ molecules to predict T cell epitopes, and the influence of the nonbinding terminal regions of ligands in epitope selection', Journal of Immunology, 161, pp. 850 - 858

Gelder C; Davenport M; Barnardo M; Bourne T; Lamb J; Askonas B; Hill A; Welsh K, 1998, 'Six unrelated HLA-DR-matched adults recognize identical CD4⁺ T cell epitopes from influenza A haemagglutinin that are not simply peptides with high HLA-DR binding affinities', International Immunology, 10, pp. 211 - 222, http://dx.doi.org/10.1093/intimm/10.2.211

Godkin A; Friede T; Davenport M; Stevanovic S; Willis A; Jewell D; Hill A; Rammensee HG, 1997, 'Use of eluted peptide sequence data to identify the binding characteristics of peptides to the insulin-dependent diabetes susceptibility allele HLA-DQ8 (DQ 3.2)', International Immunology, 9, pp. 905 - 911, http://dx.doi.org/10.1093/intimm/9.6.905

Vessey SJR; Barouch DH; McAdam SN; Tussey LG; Davenport MA; O'Callaghan CA; Bell JI; McMichael AJ; Jakobsen BK, 1997, 'Engagement of a T cell receptor by major histocompatibility complex irrespective of peptide', European Journal of Immunology, 27, pp. 879 - 885, http://dx.doi.org/10.1002/eji.1830270412

Davenport MP; Smith KJ; Barouch D; Reid SW; Bodnar WM; Willis AC; Hunt DF; Hill AVS, 1997, 'HLA class I binding motifs derived from random peptide libraries differ at the COOH terminus from those of eluted peptides', Journal of Experimental Medicine, 185, pp. 367 - 371, http://dx.doi.org/10.1084/jem.185.2.367

Davenport MP; Godkin A; Friede T; Stevanović S; Willis AC; Hill AVS; Rammensee HG, 1997, 'A distinctive peptide binding motif for HLA-DRB1(*)0407, an HLA-DR4 subtype not associated with rheumatoid arthritis', Immunogenetics, 45, pp. 229 - 232, http://dx.doi.org/10.1007/s002510050196

Davenport MP; Quinn CL; Valsasnini P; Sinigaglia F; Hill AVS; Bell JI, 1996, 'Analysis of peptide-binding motifs for two disease associated HLA-DR13 alleles using an M13 phage display library', Immunology, 88, pp. 482 - 486, http://dx.doi.org/10.1046/j.1365-2567.1996.d01-693.x

Davenport MP; Smith KJ; Hill AV, 1996, 'Evolution of allorecognition?', Immunology today, 17, pp. 589 - 590, http://dx.doi.org/10.1016/S0167-5699(97)84208-9

Davenport MP; Hill AVS, 1996, 'Reverse immunogenetics: From HLA-disease associations to vaccine candidates', Molecular Medicine Today, 2, pp. 38 - 45, http://dx.doi.org/10.1016/1357-4310(96)88757-0

Barouch D; Davenport M; Mcmichael A; Reay P, 1995, 'A mAb against HLA-A2 can be influenced both positively and negatively by the associated peptide', International Immunology, 7, pp. 1599 - 1605, http://dx.doi.org/10.1093/intimm/7.10.1599

Davenport MP, 1995, 'The promiscuous B27 hypothesis', The Lancet, 346, pp. 500 - 501, http://dx.doi.org/10.1016/S0140-6736(95)91348-3

Davenport MP; Quinn CL; Chicz RM; Green BN; Willis AC; Lane WS; Bell JI; Hill AVS, 1995, 'Naturally processed peptides from two disease-resistance-associated HLA-DR13 alleles show related sequence motifs and the effects of the dimorphism at position 86 of the HLA-DRβ chain', Proceedings of the National Academy of Sciences of the United States of America, 92, pp. 6567 - 6571

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