By Associate Professor Nadeem Omar Kaakoush

Journal articles

Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)', Autophagy, 12, pp. 1 - 222, http://dx.doi.org/10.1080/15548627.2015.1100356

Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356', Autophagy, 12, pp. 443, http://dx.doi.org/10.1080/15548627.2016.1147886

Mendz GL; Kaakoush NO; Quinlivan JA, 2016, 'New techniques to characterise the vaginal microbiome in pregnancy', AIMS Microbiology, 2, pp. 55 - 68, http://dx.doi.org/10.3934/MICROBIOL.2016.1.55

Deshpande NP; Wilkins MR; Mitchell HM; Kaakoush NO, 2015, 'Novel genetic markers define a subgroup of pathogenic Escherichia coli strains belonging to the B2 phylogenetic group', FEMS Microbiology Letters, 362, http://dx.doi.org/10.1093/femsle/fnv193

Paramsothy S; Walsh AJ; Borody T; Samuel D; Van Den Bogaerde J; Leong RWL; Connor S; Ng W; Mitchell HM; Kaakoush NO; Kamm MA, 2015, 'Gastroenterologist perceptions of faecal microbiota transplantation', World Journal of Gastroenterology, 21, pp. 10907 - 10914, http://dx.doi.org/10.3748/wjg.v21.i38.10907

Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2015, 'Autophagy in Helicobacter pylori Infection and Related Gastric Cancer', Helicobacter, 20, pp. 353 - 369, http://dx.doi.org/10.1111/hel.12211

Kaakoush NO; Castaño-Rodríguez N; Man SM; Mitchell HM, 2015, 'Is Campylobacter to esophageal adenocarcinoma as Helicobacter is to gastric adenocarcinoma?', Trends in Microbiology, 23, pp. 455 - 462, http://dx.doi.org/10.1016/j.tim.2015.03.009

Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2015, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease, http://dx.doi.org/10.1016/j.diagmicrobio.2015.10.026

Paramsothy S; Borody TJ; Lin E; Finlayson S; Walsh AJ; Samuel D; Van Den Bogaerde J; Leong RWL; Connor S; Ng W; Mitchell HM; Kaakoush N; Kamm MA, 2015, 'Donor recruitment for fecal microbiota transplantation', Inflammatory Bowel Diseases, 21, pp. 1600 - 1606, http://dx.doi.org/10.1097/MIB.0000000000000405

Castano Rodriguez N; Kaakoush N; Goh K; Fock K; Mitchell H, 2015, 'Correction: The NOD-Like Receptor Signalling Pathway in Helicobacter pylori Infection and Related Gastric Cancer: A Case-Control Study and Gene Expression Analyses', PLOS ONE, 10, pp. e0117870 - e0117870, http://dx.doi.org/10.1371/journal.pone.0117870

Kaakoush NO; Day AS; Leach ST; Lemberg DA; Nielsen S; Mitchell HM, 2015, 'Effect of exclusive enteral nutrition on the microbiota of children with newly diagnosed Crohn's disease', Clinical and Translational Gastroenterology, 6, http://dx.doi.org/10.1038/ctg.2014.21

Kaakoush NO; Castaño-Rodríguez N; Day AS; Lemberg DA; Leac ST; Mitchell HM, 2015, 'Faecal levels of zonula occludens toxin in paediatric patients with crohn’s disease and their association with the intestinal microbiota', Journal of Medical Microbiology, 64, pp. 303 - 306, http://dx.doi.org/10.1099/jmm.0.000005

Kaakoush NO; Castaño-Rodríguez N; Mitchell HM; Man SM, 2015, 'Global epidemiology of campylobacter infection', Clinical Microbiology Reviews, 28, pp. 687 - 720, http://dx.doi.org/10.1128/CMR.00006-15

Kaakoush NO, 2015, 'Insights into the role of Erysipelotrichaceae in the human host', Frontiers in Cellular and Infection Microbiology, 5, http://dx.doi.org/10.3389/fcimb.2015.00084

Kaakoush NO; Deshpande NP; Man SM; Burgos-Portugal JA; Khattak FA; Raftery MJ; Wilkins MR; Mitchell HM, 2015, 'Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus', Infection and Immunity, 83, pp. 832 - 845, http://dx.doi.org/10.1128/IAI.03012-14

Kaakoush NO; Mitchell HM; Man SM, 2014, 'Role of emerging campylobacter species in inflammatory bowel diseases', Inflammatory Bowel Diseases, 20, pp. 2189 - 2197, http://dx.doi.org/10.1097/MIB.0000000000000074

Mendz GL; Petersen R; Quinlivan JA; Kaakoush NO, 2014, 'Potential involvement of Campylobacter curvus and Haemophilus parainfluenzae in preterm birth', BMJ Case Reports, 2014, http://dx.doi.org/10.1136/bcr-2014-205282

Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2014, 'The NOD-like receptor signalling pathway in Helicobacter pylori infection and related gastric cancer: A case-control study and gene expression analyses', PLoS ONE, 9, http://dx.doi.org/10.1371/journal.pone.0098899

Kaakoush NO; Sodhi N; Chenu JW; Cox JM; Riordan SM; Mitchell HM, 2014, 'The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens', Gut Pathogens, 6, http://dx.doi.org/10.1186/1757-4749-6-18

Quinlivan J; Kaakoush N; Mendz G, 2014, 'Acinetobacter Species Associated with Spontaneous Preterm Birth and Histological Chorioamnionitis', British Journal of Medicine and Medical Research, 4, pp. 5293 - 5297, http://dx.doi.org/10.9734/bjmmr/2014/12004

Pang CNI; Tay AP; Aya C; Twine NA; Harkness L; Hart-Smith G; Chia SZ; Chen Z; Deshpande NP; Kaakoush NO; Mitchell HM; Kassem M; Wilkins MR, 2014, 'Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: Validation of genes and Alternative mRNA splicing', Journal of Proteome Research, 13, pp. 84 - 98, http://dx.doi.org/10.1021/pr400820p

Castaño-Rodríguez N; Kaakoush NO; Pardo AL; Goh KL; Fock KM; Mitchell HM, 2014, 'Genetic polymorphisms in the Toll-like receptor signalling pathway in Helicobacter pylori infection and related gastric cancer', Human Immunology, 75, pp. 808 - 815, http://dx.doi.org/10.1016/j.humimm.2014.06.001

Castaño-Rodríguez N; Kaakoush NO; Mitchell HM, 2014, 'Pattern-recognition receptors and gastric cancer', Frontiers in Immunology, 5, pp. 336, http://dx.doi.org/10.3389/fimmu.2014.00336

Burgos-Portugal JA; Mitchell HM; Castaño-Rodríguez N; Kaakoush NO, 2014, 'The role of autophagy in the intracellular survival of Campylobacter concisus', FEBS Open Bio, 4, pp. 301 - 309, http://dx.doi.org/10.1016/j.fob.2014.03.008

Lecomte V; Kaakoush NO; Maloney CA; Raipuria M; Huinao KD; Mitchell HM; Morris MJ, 2014, 'Changes in Gut Microbiota in Rats Fed a High Fat Diet Correlate with Obesity-Associated Metabolic Parameters.', PLoS One, 10, pp. e0126931, http://dx.doi.org/10.1371/journal.pone.0126931

Kaakoush NO; Castaño-Rodríguez N; Day AS; Lemberg DA; Leach ST; Mitchell HM, 2013, 'Campylobacter concisus and exotoxin 9 levels in paediatric patients with Crohn's disease and their association with the intestinal microbiota', Journal of Medical Microbiology, 63, pp. 99 - 105, http://dx.doi.org/10.1099/jmm.0.067231-0

Mendz GL; Kaakoush NO; Quinlivan JA, 2013, 'Bacterial aetiological agents of intra-amniotic infections and preterm birth in pregnant women', Frontiers in Cellular and Infection Microbiology, 4, pp. 1, http://dx.doi.org/10.3389/fcimb.2013.00058

Kaakoush NO; Man SM; Mitchell HM, 2013, 'Functional relationship between Campylobacter concisus and the stomach ecosystem in health and disease', ISME Journal, 7, pp. 2245 - 2247, http://dx.doi.org/10.1038/ismej.2013.115

Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday JS; Huinao K; Day AS, 2013, 'The effect of nutritional and non-nutritional therapies on gut barrier function and mucosal healing in a colitis mouse model', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 28, pp. 16 - 16, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000324106900032&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday JS; Huinao K; Day AS, 2013, 'Inflammatory bowel disease therapies and gut function in a colitis mouse model', BioMed Research International, 2013, http://dx.doi.org/10.1155/2013/909613

Deshpande NP; Kaakoush NO; Wilkins MR; Mitchell HM, 2013, 'Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association', BMC Genomics, 14, http://dx.doi.org/10.1186/1471-2164-14-585

Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2013, 'The Role of TLR2, TLR4 and CD14 Genetic Polymorphisms in Gastric Carcinogenesis: A Case-Control Study and Meta-Analysis', PLoS ONE, 8, pp. e60327, http://dx.doi.org/10.1371/journal.pone.0060327

Mendz GL; Kaakoush NO; Quinlivan JA, 2013, 'Bacterial aetiological agents of intra-amniotic infections and preterm birth in pregnant women', Frontiers in Cellular and Infection Microbiology, 4, http://dx.doi.org/10.3389/fcimb.2013.00058

Tay AP; Kaakoush NO; Deshpande NP; Chen Z; Mitchell H; Wilkins MR, 2013, 'Genome sequence of Campylobacter showae UNSWCD, isolated from a patient with Crohn's disease', Genome Announcements, 1, http://dx.doi.org/10.1128/genomeA.00193-12

Rehvathy V; Tan MH; Gunaletchumy SP; Teh X; Wang S; Baybayan P; Singh S; Ashby M; Kaakoush NO; Mitchell HM; Croft LJ; Goh KL; Loke MF; Vadivelu J, 2013, 'Multiple genome sequences of Helicobacter pylori strains of diverse disease and antibiotic resistance backgrounds from Malaysia', Genome Announcements, 1, http://dx.doi.org/10.1128/genomeA.e00687-13

Kaakoush NO; Mitchell HM, 2013, 'Do type VI secretion systems translocate more than just proteins?', Helicobacter, http://dx.doi.org/10.1111/hel.12038

Rehvathy V; Tan MH; Gunaletchumya SP; Teh X; Wang X; Baybayan P; Singh S; Ashby M; Kaakoush NO; Mitchell HM; Croft LJ; Goh KL; Loke MF; Vadivelua J, 2013, 'Multiple Genome Sequences of Helicobacter pylori Strains of Diverse Disease and Antibiotic Resistance Backgrounds from Malaysia', Genome Announcements, 1, pp. e00687-13, http://dx.doi.org/10.1128/genomeA.00687-13

Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday J; Huinao K; Day AS, 2013, 'Su2016 Nutritional Therapy Modulates Inflammation and Improves Altered Barrier Function in a Mouse Model of Colitis', Gastroenterology, 144, pp. S - 532, http://dx.doi.org/10.1016/s0016-5085(13)61978-2

Sirianni A; Kaakoush NO; Raftery MJ; Mitchell HM, 2013, 'The pathogenic potential of Helicobacter pullorum: Possible role for the Type VI secretion system', Helicobacter, 18, pp. 102 - 111, http://dx.doi.org/10.1111/hel.12009

Kaakoush NO; Sirianni A; Raftery MJ; Mitchell HM, 2013, 'The Secretome of Helicobacter Trogontum', Helicobacter, 18, pp. 316 - 320, http://dx.doi.org/10.1111/hel.12045

Burgos-Portugal JA; Kaakoush NO; Raftery MJ; Mitchell HM, 2012, 'Pathogenic potential of Campylobacter ureolyticus', Infection and Immunity, 80, pp. 883 - 890, http://dx.doi.org/10.1128/IAI.06031-11

Castano-Rodriguez N; Kaakoush NO; Pardo AL; Schmidt H-MA; Ha DM; Goh K-L; Fock KM; Sutton P; Forman D; Mitchell HM, 2012, 'Genetic polymorphisms involved in the toll-like receptor signaling pathway and Helicobacter pylori-related gastric cancer: a case-control study and meta-analysis', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 27, pp. 11 - 11, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000298599600029&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Castano-Rodriguez N; Kaakoush NO; Pardo AL; Schmidt H-MA; Ha DM; Sutton P; Goh K-L; Fock KM; Forman D; Mitchell HM, 2012, 'PAR-1 polymorphisms and risk of gastric cancer in a Chinese population', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 27, pp. 11 - 11, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000298599600030&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Kaakoush NO; Mitchell HM, 2012, 'Campylobacter concisus - a new player in intestinal disease', Frontiers in Cellular and Infection Microbiology, 2, pp. 4 - 4, http://dx.doi.org/10.3389/fcimb.2012.00004

Gunaletchumy SP; Teh X; Khosravi Y; Chua EG; Kavitha T; Ramli NS; Mason JN; Lee HT; Alias H; Zaidan NZ; Tay LC; Rudd S; Mitchell HM; Kaakoush NO; Loke MF; Goh K-L; Vadivelu J, 2012, 'Draft genome sequences of Helicobacter pylori isolated from Malaysia, cultured from patients with functional dyspepsia and gastric cancer', Journal of Bacteriology, 194, pp. 5695 - 5696, http://www.ncbi.nlm.nih.gov/pubmed/23012278

Lavrencic P; Kaakoush NO; Huinao KD; Kain N; Mitchell HM, 2012, 'Investigation of motility and biofilm formation by intestinal Campylobacter concisus strains.', Gut Pathogens, 4, pp. 22

Kaakoush NO; Huinao KD; Leach ST; Lemberg DA; Dowd S; Mitchell HM; Day AS, 2012, 'Microbial dysbiosis in pediatric patients with Crohn's disease.', Journal of Clinical Microbiology, 50, pp. 3258 - 3266, http://dx.doi.org/10.1128/JCM.01396-12

Castano-Rodriguez N; Kaakoush NO; Schmidt HA; Goh K; Fock KM; Sutton P; Chionh Y; Mitchell HM, 2012, 'PAR-1 polymorphisms and risk of Helicobacter pylori-related gastric cancer in a Chinese population', Anticancer Research, 32, pp. 3715 - 3721, http://www.ncbi.nlm.nih.gov/pubmed/22993310

Burgos-Portugal J; Kaakoush NO; Raftery MJ; Mitchell HM, 2012, 'Pathogenic potential of Campylobacter ureolyticus', Infection and Immunity, 80, pp. 883 - 890, http://dx.doi.org/10.1128/?IAI.06031-11

Man SM; Kaakoush NO; Mitchell HM, 2011, 'Erratum: The role of bacteria and pattern-recognition receptors in Crohn's disease (Nature Reviews Gastroenterology and Hepatology (2011) 8 (152-168) DOI:10.1038/nrgastro.2011.3)', Nature Reviews Gastroenterology and Hepatology, 8, pp. 1, http://dx.doi.org/10.1038/nrgastro.2011.56

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